Wall clock time and date at job start Wed Apr 1 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99588 * 2 1 4 4 H 1.48500 * 109.46917 * 268.37165 * 3 2 1 5 5 H 1.48492 * 109.47210 * 28.37428 * 3 2 1 6 6 H 1.48502 * 109.46862 * 148.37692 * 3 2 1 7 7 C 1.38808 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99743 * 339.86502 * 7 2 1 9 9 N 1.36933 * 120.00244 * 159.87258 * 7 2 1 10 10 C 1.47088 * 121.01260 * 155.22320 * 9 7 2 11 11 C 1.53263 * 109.26114 * 116.45947 * 10 9 7 12 12 N 1.46559 * 109.23731 * 45.97853 * 11 10 9 13 13 N 1.39739 * 127.32360 * 161.35945 * 12 11 10 14 14 C 1.31015 * 108.17885 * 179.54613 * 13 12 11 15 15 C 1.40069 * 108.25215 * 0.14411 * 14 13 12 16 16 C 1.50703 * 126.12543 * 180.09013 * 15 14 13 17 17 N 1.46499 * 109.46714 * 259.97383 * 16 15 14 18 18 C 1.34777 * 119.99956 * 179.97438 * 17 16 15 19 19 O 1.21283 * 119.99782 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00258 * 179.97438 * 18 17 16 21 21 H 1.08999 * 109.29917 * 320.41421 * 20 18 17 22 22 C 1.52924 * 109.29880 * 79.99974 * 20 18 17 23 23 C 1.53348 * 108.67120 * 171.06704 * 22 20 18 24 24 C 1.53069 * 108.42385 * 292.46546 * 23 22 20 25 25 C 1.50182 * 109.89141 * 48.90381 * 24 23 22 26 26 O 1.21283 * 118.24355 * 162.43593 * 25 24 23 27 27 N 1.33343 * 123.50488 * 342.41851 * 25 24 23 28 28 C 1.34648 * 107.75024 * 0.06461 * 15 14 13 29 29 C 1.47490 * 121.00515 * 335.15315 * 9 7 2 30 30 H 0.96992 * 119.99953 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.51310 * 356.51720 * 10 9 7 32 32 H 1.08992 * 109.51663 * 236.41146 * 10 9 7 33 33 H 1.09000 * 109.51114 * 165.90631 * 11 10 9 34 34 H 1.08998 * 109.51101 * 286.00500 * 11 10 9 35 35 H 1.08000 * 125.87433 * 180.17986 * 14 13 12 36 36 H 1.08994 * 109.46693 * 19.97092 * 16 15 14 37 37 H 1.09000 * 109.47153 * 139.97562 * 16 15 14 38 38 H 0.96997 * 120.00613 * 359.97438 * 17 16 15 39 39 H 1.09000 * 109.60334 * 290.81934 * 22 20 18 40 40 H 1.08998 * 109.60312 * 51.31443 * 22 20 18 41 41 H 1.08994 * 109.67975 * 52.20423 * 23 22 20 42 42 H 1.09006 * 109.66956 * 172.73913 * 23 22 20 43 43 H 1.09004 * 109.39818 * 169.03063 * 24 23 22 44 44 H 1.08997 * 109.40676 * 288.77530 * 24 23 22 45 45 H 0.97011 * 117.94745 * 182.22528 * 27 25 24 46 46 H 1.08999 * 109.89318 * 103.53969 * 29 9 7 47 47 H 1.09003 * 109.96554 * 342.31323 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5320 2.0266 -1.3995 5 1 1.4308 2.6623 0.6653 6 1 3.5301 1.4504 0.7341 7 6 2.0103 -1.2021 -0.0005 8 1 1.5198 -2.1090 0.3211 9 7 3.3169 -1.2381 -0.4086 10 6 4.2278 -2.2945 0.0581 11 6 4.6825 -3.1355 -1.1398 12 7 5.0699 -2.2439 -2.2366 13 7 5.8609 -2.5582 -3.3448 14 6 5.9607 -1.4871 -4.0927 15 6 5.2376 -0.4556 -3.4804 16 6 5.0822 0.9505 -4.0001 17 7 6.0107 1.8372 -3.2946 18 6 6.0490 3.1502 -3.5960 19 8 5.3151 3.5976 -4.4517 20 6 7.0037 4.0626 -2.8699 21 1 7.0380 3.7835 -1.8168 22 6 8.4000 3.9191 -3.4766 23 6 9.3061 5.0060 -2.8857 24 6 8.8207 6.3674 -3.3898 25 6 7.3361 6.4845 -3.1955 26 8 6.8379 7.5897 -3.2328 27 7 6.5366 5.4385 -2.9845 28 6 4.7056 -0.9453 -2.3445 29 6 3.8532 -0.2195 -1.3307 30 1 -0.4850 0.8400 0.0004 31 1 3.7095 -2.9318 0.7745 32 1 5.0965 -1.8415 0.5356 33 1 5.5358 -3.7492 -0.8509 34 1 3.8647 -3.7789 -1.4643 35 1 6.5062 -1.4125 -5.0218 36 1 5.3018 0.9695 -5.0675 37 1 4.0594 1.2885 -3.8334 38 1 6.5979 1.4794 -2.6105 39 1 8.8040 2.9357 -3.2362 40 1 8.3428 4.0392 -4.5585 41 1 9.2521 4.9772 -1.7974 42 1 10.3346 4.8411 -3.2071 43 1 9.3223 7.1593 -2.8336 44 1 9.0560 6.4660 -4.4495 45 1 5.5842 5.6035 -2.9022 46 1 4.4612 0.4972 -0.7786 47 1 3.0345 0.2953 -1.8335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069864357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:11 Heat of formation + Delta-G solvation = 5.213644 kcal Electronic energy + Delta-G solvation = -31130.150182 eV Core-core repulsion = 26927.989140 eV Total energy + Delta-G solvation = -4202.161043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56413 -41.76622 -40.28897 -38.24406 -37.38378 -36.26981 -34.69472 -33.97034 -33.45587 -32.09847 -31.40030 -30.20553 -27.93408 -26.90169 -25.84481 -25.11003 -23.79380 -23.30611 -21.79802 -21.57541 -20.40537 -20.11393 -19.01290 -18.69314 -18.16944 -17.73736 -17.47572 -16.97355 -16.83618 -16.47868 -16.19022 -16.11716 -15.71828 -15.33088 -15.22533 -15.11449 -15.04382 -14.69309 -14.59282 -14.53600 -14.34659 -14.02667 -13.83326 -13.32859 -13.11030 -13.04197 -12.99005 -12.62415 -12.42362 -12.33910 -12.17497 -12.01193 -11.87407 -11.81233 -11.61546 -11.37286 -10.90022 -10.82865 -10.25765 -10.19506 -10.15107 -9.51489 -9.19815 -8.25496 -5.62259 0.80841 1.23891 1.32981 1.39451 1.41964 1.46097 1.53115 1.62905 2.10960 2.32330 2.46279 2.84600 3.16210 3.51290 3.53286 3.56811 3.58473 3.67506 3.86826 4.03337 4.07064 4.09810 4.16895 4.23916 4.25334 4.37561 4.40433 4.45604 4.54137 4.71274 4.77772 4.79728 4.84260 4.88696 4.96296 4.97222 5.08083 5.11462 5.28922 5.33488 5.56925 5.67224 5.70865 5.95180 6.04074 6.22190 6.47970 6.67059 6.76694 7.06209 7.14097 7.43309 7.79794 8.93091 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003460 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.128492 B = 8089.677053 C = 9727.719769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.246 1.246 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.622 5.622 10 C 0.130 3.870 11 C 0.115 3.885 12 N -0.362 5.362 13 N -0.320 5.320 14 C 0.072 3.928 15 C -0.266 4.266 16 C 0.210 3.790 17 N -0.704 5.704 18 C 0.499 3.501 19 O -0.577 6.577 20 C 0.124 3.876 21 H 0.127 0.873 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.132 4.132 25 C 0.516 3.484 26 O -0.612 6.612 27 N -0.705 5.705 28 C 0.097 3.903 29 C 0.180 3.820 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.219 0.781 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.416 0.584 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.393 0.607 46 H 0.066 0.934 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.246 1.652 -4.794 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.223 4.223 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.170 1.170 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.346 5.346 10 C 0.004 3.996 11 C -0.007 4.007 12 N -0.144 5.144 13 N -0.139 5.139 14 C -0.114 4.114 15 C -0.278 4.278 16 C 0.085 3.915 17 N -0.356 5.356 18 C 0.284 3.716 19 O -0.456 6.456 20 C 0.016 3.984 21 H 0.145 0.855 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.172 4.172 25 C 0.305 3.695 26 O -0.494 6.494 27 N -0.354 5.354 28 C -0.034 4.034 29 C 0.054 3.946 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.253 0.747 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.227 0.773 46 H 0.083 0.917 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.870 1.142 -5.140 25.421 hybrid contribution -1.498 1.467 0.229 2.110 sum 23.372 2.609 -4.911 24.024 Atomic orbital electron populations 1.69937 1.07414 1.27397 1.54759 1.25812 0.95742 1.00806 0.99971 0.86206 0.79251 0.80519 0.77982 1.20300 1.24174 1.17019 1.18821 0.85833 0.94070 1.39516 0.91605 1.44582 1.08395 1.30364 1.51257 1.21550 0.93895 0.90483 0.93699 1.22541 1.01382 0.92212 0.84595 1.48684 1.38399 1.08259 1.19023 1.77246 1.15002 1.24399 0.97297 1.24291 0.98314 0.88731 1.00077 1.19496 1.11874 0.97955 0.98520 1.19248 0.92220 0.83443 0.96541 1.46043 1.40949 1.07169 1.41428 1.21293 0.83836 0.83284 0.83161 1.90748 1.44112 1.76173 1.34611 1.21219 0.95031 0.80141 1.02013 0.85547 1.21964 0.89834 1.03219 1.01093 1.21693 1.00830 0.90539 1.01937 1.21762 0.87992 1.01892 1.05526 1.21075 0.91808 0.82731 0.73871 1.90744 1.77496 1.27312 1.53876 1.45465 1.11411 1.06486 1.72080 1.21539 0.97351 0.86860 0.97679 1.20317 0.94615 0.91216 0.88486 0.92809 0.88092 0.91811 0.86114 0.90970 0.76489 0.89154 0.93901 0.74735 0.85781 0.90928 0.89646 0.86843 0.86958 0.87032 0.77257 0.91685 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 13.97 21.65 0.30 -57.31 16 2 C -0.03 -1.52 5.26 84.86 0.45 -1.08 16 3 Si 0.93 43.29 24.15 68.60 1.66 44.94 16 4 H -0.28 -12.45 6.47 99.48 0.64 -11.81 16 5 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 6 H -0.25 -10.28 6.61 99.48 0.66 -9.63 16 7 C -0.25 -13.18 10.10 84.03 0.85 -12.33 16 8 H 0.07 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.62 -25.90 2.81 -701.17 -1.97 -27.87 16 10 C 0.13 3.99 6.49 86.36 0.56 4.55 16 11 C 0.12 3.15 7.45 86.46 0.64 3.79 16 12 N -0.36 -11.24 4.03 -334.02 -1.35 -12.58 16 13 N -0.32 -9.17 12.61 -56.80 -0.72 -9.89 16 14 C 0.07 1.69 11.97 85.26 1.02 2.72 16 15 C -0.27 -7.08 5.46 -20.24 -0.11 -7.19 16 16 C 0.21 5.26 5.95 85.63 0.51 5.77 16 17 N -0.70 -13.92 5.55 -466.79 -2.59 -16.51 16 18 C 0.50 11.20 6.98 87.66 0.61 11.81 16 19 O -0.58 -18.74 16.40 -3.04 -0.05 -18.79 16 20 C 0.12 1.89 3.45 44.36 0.15 2.04 16 21 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 22 C -0.12 -0.99 5.29 30.69 0.16 -0.83 16 23 C -0.11 -0.62 6.03 30.73 0.19 -0.43 16 24 C -0.13 -1.60 6.03 29.71 0.18 -1.42 16 25 C 0.52 11.94 7.71 87.72 0.68 12.62 16 26 O -0.61 -20.50 17.78 -3.04 -0.05 -20.56 16 27 N -0.70 -15.53 4.79 -450.23 -2.16 -17.68 16 28 C 0.10 3.16 6.71 41.31 0.28 3.44 16 29 C 0.18 6.88 4.24 85.55 0.36 7.24 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.10 2.94 7.94 -2.39 -0.02 2.92 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.42 5.91 8.46 -92.71 -0.78 5.12 16 39 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.08 0.37 8.13 -2.39 -0.02 0.35 16 42 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.39 10.40 8.46 -92.70 -0.78 9.62 16 46 H 0.07 2.32 6.41 -2.39 -0.02 2.30 16 47 H 0.07 3.09 5.12 -2.39 -0.01 3.08 16 Total: -1.00 -81.41 379.88 -1.05 -82.47 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.66 Total: 23.08 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 6.53 Total: 30.70 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -8.48 Total: -141.85 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.10 Total: -39.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.66 Total: 44.94 kcal Total: -81.41 -1.05 -82.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069864357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.682 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds