Wall clock time and date at job start Wed Apr 1 2020 04:27:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 120.00083 * 2 1
4 4 H 1.48505 * 109.47102 * 269.99805 * 3 2 1
5 5 H 1.48505 * 109.47259 * 29.99557 * 3 2 1
6 6 H 1.48497 * 109.47542 * 149.99958 * 3 2 1
7 7 C 1.38806 * 120.00378 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00359 * 164.46180 * 7 2 1
9 9 N 1.36935 * 120.00025 * 344.46124 * 7 2 1
10 10 C 1.47085 * 121.01907 * 155.89621 * 9 7 2
11 11 C 1.53255 * 109.23238 * 116.42424 * 10 9 7
12 12 N 1.46551 * 109.24724 * 45.96259 * 11 10 9
13 13 N 1.39746 * 127.32301 * 161.46991 * 12 11 10
14 14 C 1.31010 * 108.17799 * 179.23559 * 13 12 11
15 15 C 1.40077 * 108.25081 * 0.52898 * 14 13 12
16 16 C 1.50702 * 126.12256 * 179.97438 * 15 14 13
17 17 N 1.46506 * 109.46698 * 259.68494 * 16 15 14
18 18 C 1.34778 * 119.99768 * 180.02562 * 17 16 15
19 19 O 1.21275 * 120.00134 * 359.97438 * 18 17 16
20 20 C 1.50700 * 119.99879 * 179.97438 * 18 17 16
21 21 H 1.09005 * 109.60133 * 59.67574 * 20 18 17
22 22 C 1.53338 * 109.60506 * 179.97438 * 20 18 17
23 23 C 1.53069 * 108.43009 * 187.45107 * 22 20 18
24 24 C 1.50178 * 109.89103 * 311.10257 * 23 22 20
25 25 O 1.21279 * 118.24771 * 197.58253 * 24 23 22
26 26 N 1.33359 * 123.50605 * 17.85920 * 24 23 22
27 27 C 1.45770 * 124.08871 * 357.20492 * 26 24 23
28 28 C 1.34637 * 107.75250 * 359.66863 * 15 14 13
29 29 C 1.47500 * 121.01082 * 335.87534 * 9 7 2
30 30 H 0.97003 * 119.99496 * 0.02562 * 1 2 3
31 31 H 1.09007 * 109.50825 * 356.49441 * 10 9 7
32 32 H 1.08997 * 109.55204 * 236.37931 * 10 9 7
33 33 H 1.09001 * 109.50476 * 286.03123 * 11 10 9
34 34 H 1.08998 * 109.54343 * 165.92211 * 11 10 9
35 35 H 1.08001 * 125.87266 * 180.37166 * 14 13 12
36 36 H 1.08996 * 109.47742 * 139.68842 * 16 15 14
37 37 H 1.09001 * 109.47332 * 19.67718 * 16 15 14
38 38 H 0.97002 * 120.00403 * 0.02562 * 17 16 15
39 39 H 1.09001 * 109.67238 * 67.71686 * 22 20 18
40 40 H 1.09005 * 109.67834 * 307.18408 * 22 20 18
41 41 H 1.09000 * 109.40545 * 190.97092 * 23 22 20
42 42 H 1.09007 * 109.32939 * 71.18567 * 23 22 20
43 43 H 0.96994 * 117.94529 * 177.47427 * 26 24 23
44 44 H 1.09001 * 109.51563 * 259.17175 * 27 26 24
45 45 H 1.09004 * 109.15645 * 139.75858 * 27 26 24
46 46 H 1.09002 * 109.95100 * 103.61949 * 29 9 7
47 47 H 1.09010 * 109.95051 * 342.36696 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4476 2.6528 0.7000
6 1 3.5478 1.4403 0.7000
7 6 2.0103 -1.2021 0.0005
8 1 3.0607 -1.2193 -0.2500
9 7 1.3632 -2.3662 0.3187
10 6 1.8639 -3.6655 -0.1549
11 6 2.2733 -4.5187 1.0506
12 7 1.2243 -4.4472 2.0715
13 7 1.0198 -5.3254 3.1392
14 6 -0.0115 -4.9004 3.8263
15 6 -0.5033 -3.7432 3.2087
16 6 -1.6836 -2.9254 3.6659
17 7 -2.8563 -3.2656 2.8564
18 6 -4.0350 -2.6541 3.0873
19 8 -4.1249 -1.8225 3.9655
20 6 -5.2411 -3.0036 2.2542
21 1 -5.4659 -4.0646 2.3633
22 6 -6.4442 -2.1731 2.7170
23 6 -7.6908 -2.6783 1.9863
24 6 -7.4128 -2.7832 0.5142
25 8 -8.3563 -2.8507 -0.2448
26 7 -6.1838 -2.8115 -0.0027
27 6 -4.9633 -2.6860 0.7844
28 6 0.2715 -3.4888 2.1374
29 6 0.1430 -2.3553 1.1474
30 1 -0.4849 0.8401 -0.0004
31 1 2.7281 -3.5092 -0.8006
32 1 1.0800 -4.1769 -0.7135
33 1 3.2089 -4.1409 1.4629
34 1 2.4057 -5.5540 0.7365
35 1 -0.4148 -5.3639 4.7144
36 1 -1.4578 -1.8653 3.5507
37 1 -1.8909 -3.1410 4.7141
38 1 -2.7846 -3.9310 2.1542
39 1 -6.2790 -1.1227 2.4775
40 1 -6.5777 -2.2881 3.7927
41 1 -8.5137 -1.9827 2.1506
42 1 -7.9634 -3.6599 2.3741
43 1 -6.0968 -2.9185 -0.9628
44 1 -4.5797 -1.6690 0.7019
45 1 -4.2169 -3.3815 0.4005
46 1 -0.7346 -2.5079 0.5192
47 1 0.0617 -1.4062 1.6773
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001069866159.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:36
Heat of formation + Delta-G solvation = 24.339132 kcal
Electronic energy + Delta-G solvation = -31093.452831 eV
Core-core repulsion = 26892.121131 eV
Total energy + Delta-G solvation = -4201.331699 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.10571 -40.67261 -39.29328 -36.44656 -36.30560 -34.94348 -33.16487 -33.07859
-31.50903 -30.38700 -30.22693 -28.66214 -26.16925 -25.15216 -24.77555 -23.64148
-23.05397 -21.84134 -20.64995 -20.24622 -19.30609 -18.49085 -17.82390 -16.80627
-16.77374 -16.45015 -15.99818 -15.75466 -15.45562 -15.21244 -15.10655 -14.66190
-14.26867 -14.03906 -13.98321 -13.82503 -13.61687 -13.55595 -13.36617 -13.21546
-12.61561 -12.56716 -12.07230 -11.97864 -11.76583 -11.68315 -11.44385 -11.37107
-11.24268 -11.04927 -10.94685 -10.79017 -10.27560 -10.26915 -10.15090 -9.92873
-9.84188 -9.27804 -8.98361 -8.88217 -8.63448 -8.01907 -7.15905 -6.09260
-3.51335 2.33403 2.47804 2.62006 2.82506 2.93304 3.12084 3.24006
3.32954 3.33832 3.57312 4.25540 4.32768 4.40256 4.46695 4.55729
4.87553 4.98927 5.03100 5.05683 5.11740 5.13278 5.26856 5.29521
5.43362 5.47750 5.52620 5.54173 5.57254 5.64941 5.76607 5.77783
5.96656 6.04428 6.15085 6.28900 6.33836 6.44728 6.55976 6.58272
6.81222 7.00038 7.05073 7.12602 7.49409 7.53116 7.62367 8.01761
8.03336 8.15390 8.28601 8.84884 9.47182 9.99311 11.01840
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.009318 B = 0.003383 C = 0.002862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3004.093391 B = 8274.759413 C = 9782.026388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.010 3.990
3 Si 0.908 3.092
4 H -0.285 1.285
5 H -0.286 1.286
6 H -0.278 1.278
7 C -0.265 4.265
8 H 0.073 0.927
9 N -0.596 5.596
10 C 0.129 3.871
11 C 0.113 3.887
12 N -0.357 5.357
13 N -0.317 5.317
14 C 0.056 3.944
15 C -0.290 4.290
16 C 0.209 3.791
17 N -0.716 5.716
18 C 0.522 3.478
19 O -0.537 6.537
20 C -0.125 4.125
21 H 0.105 0.895
22 C -0.104 4.104
23 C -0.135 4.135
24 C 0.519 3.481
25 O -0.563 6.563
26 N -0.716 5.716
27 C 0.117 3.883
28 C 0.119 3.881
29 C 0.231 3.769
30 H 0.259 0.741
31 H 0.085 0.915
32 H 0.036 0.964
33 H 0.076 0.924
34 H 0.080 0.920
35 H 0.175 0.825
36 H 0.075 0.925
37 H 0.069 0.931
38 H 0.399 0.601
39 H 0.080 0.920
40 H 0.088 0.912
41 H 0.104 0.896
42 H 0.101 0.899
43 H 0.403 0.597
44 H 0.081 0.919
45 H 0.085 0.915
46 H 0.056 0.944
47 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.358 -8.835 4.096 12.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.189 4.189
3 Si 0.737 3.263
4 H -0.211 1.211
5 H -0.212 1.212
6 H -0.204 1.204
7 C -0.393 4.393
8 H 0.091 0.909
9 N -0.319 5.319
10 C 0.001 3.999
11 C -0.011 4.011
12 N -0.138 5.138
13 N -0.137 5.137
14 C -0.131 4.131
15 C -0.302 4.302
16 C 0.086 3.914
17 N -0.367 5.367
18 C 0.306 3.694
19 O -0.414 6.414
20 C -0.146 4.146
21 H 0.123 0.877
22 C -0.142 4.142
23 C -0.175 4.175
24 C 0.306 3.694
25 O -0.442 6.442
26 N -0.368 5.368
27 C -0.008 4.008
28 C -0.012 4.012
29 C 0.105 3.895
30 H 0.069 0.931
31 H 0.103 0.897
32 H 0.054 0.946
33 H 0.094 0.906
34 H 0.098 0.902
35 H 0.192 0.808
36 H 0.093 0.907
37 H 0.088 0.912
38 H 0.233 0.767
39 H 0.098 0.902
40 H 0.107 0.893
41 H 0.123 0.877
42 H 0.119 0.881
43 H 0.239 0.761
44 H 0.099 0.901
45 H 0.104 0.896
46 H 0.073 0.927
47 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -6.946 -8.990 4.374 12.174
hybrid contribution 0.222 0.925 -0.579 1.114
sum -6.725 -8.064 3.795 11.165
Atomic orbital electron populations
1.69923 1.05230 1.26278 1.53263 1.25008 0.95463 0.98551 0.99914
0.86223 0.79173 0.83058 0.77886 1.21130 1.21224 1.20357 1.19149
0.92492 0.83923 1.43754 0.90901 1.44196 1.29272 1.01356 1.57044
1.21271 0.99296 0.87353 0.92005 1.22556 0.88774 1.01541 0.88180
1.48511 1.24060 1.19410 1.21852 1.77185 1.20043 1.16519 0.99988
1.23683 0.94530 0.95298 0.99539 1.19416 1.05241 1.03414 1.02136
1.19336 0.80434 0.98041 0.93599 1.46262 1.09520 1.42971 1.37932
1.20105 0.83817 0.81280 0.84205 1.90716 1.84628 1.32783 1.33249
1.21645 0.95301 1.02903 0.94795 0.87721 1.21504 0.91056 1.00171
1.01494 1.21688 1.00121 1.04656 0.91014 1.20254 0.82345 0.75153
0.91660 1.90759 1.41955 1.50896 1.60566 1.45431 1.05614 1.73950
1.11772 1.21351 0.86385 1.03641 0.89384 1.22599 0.88490 0.92811
0.97336 1.19917 0.89284 0.92283 0.88063 0.93059 0.89713 0.94622
0.90569 0.90165 0.80757 0.90690 0.91230 0.76660 0.90172 0.89331
0.87736 0.88113 0.76132 0.90074 0.89623 0.92654 0.87286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.29 11.07 55.49 0.61 -22.67 16
2 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16
3 Si 0.91 20.13 29.58 -169.99 -5.03 15.10 16
4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16
7 C -0.26 -6.48 9.66 -15.06 -0.15 -6.62 16
8 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16
9 N -0.60 -13.08 3.01 -172.96 -0.52 -13.60 16
10 C 0.13 2.26 6.49 -3.59 -0.02 2.24 16
11 C 0.11 1.81 7.44 -3.88 -0.03 1.78 16
12 N -0.36 -6.40 4.03 -56.94 -0.23 -6.63 16
13 N -0.32 -5.50 12.61 30.70 0.39 -5.11 16
14 C 0.06 0.84 11.97 -17.21 -0.21 0.64 16
15 C -0.29 -4.53 5.46 -105.21 -0.57 -5.11 16
16 C 0.21 2.96 5.95 -5.19 -0.03 2.93 16
17 N -0.72 -8.56 5.46 -61.47 -0.34 -8.89 16
18 C 0.52 6.41 7.14 -10.98 -0.08 6.33 16
19 O -0.54 -8.60 15.89 5.56 0.09 -8.51 16
20 C -0.12 -1.13 2.59 -91.64 -0.24 -1.37 16
21 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16
22 C -0.10 -0.95 4.71 -26.52 -0.12 -1.08 16
23 C -0.14 -1.16 6.03 -28.10 -0.17 -1.33 16
24 C 0.52 5.96 7.71 -11.87 -0.09 5.87 16
25 O -0.56 -8.75 17.78 5.56 0.10 -8.65 16
26 N -0.72 -7.01 5.45 -61.38 -0.33 -7.35 16
27 C 0.12 1.07 6.34 -4.48 -0.03 1.04 16
28 C 0.12 2.17 6.71 -82.17 -0.55 1.62 16
29 C 0.23 4.81 5.11 -4.48 -0.02 4.78 16
30 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16
31 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16
32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16
34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
35 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16
36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
38 H 0.40 4.17 8.15 -40.82 -0.33 3.83 16
39 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16
40 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16
41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16
42 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16
43 H 0.40 3.72 8.80 -40.82 -0.36 3.36 16
44 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16
45 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16
46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
47 H 0.11 2.59 6.46 -51.92 -0.34 2.25 16
LS Contribution 385.43 15.07 5.81 5.81
Total: -1.00 -31.81 385.43 -8.73 -40.54
By element:
Atomic # 1 Polarization: 14.95 SS G_CDS: -6.88 Total: 8.07 kcal
Atomic # 6 Polarization: 14.30 SS G_CDS: -2.40 Total: 11.89 kcal
Atomic # 7 Polarization: -63.84 SS G_CDS: -0.42 Total: -64.26 kcal
Atomic # 8 Polarization: -17.34 SS G_CDS: 0.19 Total: -17.16 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -31.81 -8.73 -40.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001069866159.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.884 kcal
(2) G-P(sol) polarization free energy of solvation -31.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds