Wall clock time and date at job start Wed Apr 1 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48505 * 109.47102 * 269.99805 * 3 2 1 5 5 H 1.48505 * 109.47259 * 29.99557 * 3 2 1 6 6 H 1.48497 * 109.47542 * 149.99958 * 3 2 1 7 7 C 1.38806 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00359 * 164.46180 * 7 2 1 9 9 N 1.36935 * 120.00025 * 344.46124 * 7 2 1 10 10 C 1.47085 * 121.01907 * 155.89621 * 9 7 2 11 11 C 1.53255 * 109.23238 * 116.42424 * 10 9 7 12 12 N 1.46551 * 109.24724 * 45.96259 * 11 10 9 13 13 N 1.39746 * 127.32301 * 161.46991 * 12 11 10 14 14 C 1.31010 * 108.17799 * 179.23559 * 13 12 11 15 15 C 1.40077 * 108.25081 * 0.52898 * 14 13 12 16 16 C 1.50702 * 126.12256 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46698 * 259.68494 * 16 15 14 18 18 C 1.34778 * 119.99768 * 180.02562 * 17 16 15 19 19 O 1.21275 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99879 * 179.97438 * 18 17 16 21 21 H 1.09005 * 109.60133 * 59.67574 * 20 18 17 22 22 C 1.53338 * 109.60506 * 179.97438 * 20 18 17 23 23 C 1.53069 * 108.43009 * 187.45107 * 22 20 18 24 24 C 1.50178 * 109.89103 * 311.10257 * 23 22 20 25 25 O 1.21279 * 118.24771 * 197.58253 * 24 23 22 26 26 N 1.33359 * 123.50605 * 17.85920 * 24 23 22 27 27 C 1.45770 * 124.08871 * 357.20492 * 26 24 23 28 28 C 1.34637 * 107.75250 * 359.66863 * 15 14 13 29 29 C 1.47500 * 121.01082 * 335.87534 * 9 7 2 30 30 H 0.97003 * 119.99496 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.50825 * 356.49441 * 10 9 7 32 32 H 1.08997 * 109.55204 * 236.37931 * 10 9 7 33 33 H 1.09001 * 109.50476 * 286.03123 * 11 10 9 34 34 H 1.08998 * 109.54343 * 165.92211 * 11 10 9 35 35 H 1.08001 * 125.87266 * 180.37166 * 14 13 12 36 36 H 1.08996 * 109.47742 * 139.68842 * 16 15 14 37 37 H 1.09001 * 109.47332 * 19.67718 * 16 15 14 38 38 H 0.97002 * 120.00403 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.67238 * 67.71686 * 22 20 18 40 40 H 1.09005 * 109.67834 * 307.18408 * 22 20 18 41 41 H 1.09000 * 109.40545 * 190.97092 * 23 22 20 42 42 H 1.09007 * 109.32939 * 71.18567 * 23 22 20 43 43 H 0.96994 * 117.94529 * 177.47427 * 26 24 23 44 44 H 1.09001 * 109.51563 * 259.17175 * 27 26 24 45 45 H 1.09004 * 109.15645 * 139.75858 * 27 26 24 46 46 H 1.09002 * 109.95100 * 103.61949 * 29 9 7 47 47 H 1.09010 * 109.95051 * 342.36696 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0607 -1.2193 -0.2500 9 7 1.3632 -2.3662 0.3187 10 6 1.8639 -3.6655 -0.1549 11 6 2.2733 -4.5187 1.0506 12 7 1.2243 -4.4472 2.0715 13 7 1.0198 -5.3254 3.1392 14 6 -0.0115 -4.9004 3.8263 15 6 -0.5033 -3.7432 3.2087 16 6 -1.6836 -2.9254 3.6659 17 7 -2.8563 -3.2656 2.8564 18 6 -4.0350 -2.6541 3.0873 19 8 -4.1249 -1.8225 3.9655 20 6 -5.2411 -3.0036 2.2542 21 1 -5.4659 -4.0646 2.3633 22 6 -6.4442 -2.1731 2.7170 23 6 -7.6908 -2.6783 1.9863 24 6 -7.4128 -2.7832 0.5142 25 8 -8.3563 -2.8507 -0.2448 26 7 -6.1838 -2.8115 -0.0027 27 6 -4.9633 -2.6860 0.7844 28 6 0.2715 -3.4888 2.1374 29 6 0.1430 -2.3553 1.1474 30 1 -0.4849 0.8401 -0.0004 31 1 2.7281 -3.5092 -0.8006 32 1 1.0800 -4.1769 -0.7135 33 1 3.2089 -4.1409 1.4629 34 1 2.4057 -5.5540 0.7365 35 1 -0.4148 -5.3639 4.7144 36 1 -1.4578 -1.8653 3.5507 37 1 -1.8909 -3.1410 4.7141 38 1 -2.7846 -3.9310 2.1542 39 1 -6.2790 -1.1227 2.4775 40 1 -6.5777 -2.2881 3.7927 41 1 -8.5137 -1.9827 2.1506 42 1 -7.9634 -3.6599 2.3741 43 1 -6.0968 -2.9185 -0.9628 44 1 -4.5797 -1.6690 0.7019 45 1 -4.2169 -3.3815 0.4005 46 1 -0.7346 -2.5079 0.5192 47 1 0.0617 -1.4062 1.6773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069866159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:36 Heat of formation + Delta-G solvation = 24.339132 kcal Electronic energy + Delta-G solvation = -31093.452831 eV Core-core repulsion = 26892.121131 eV Total energy + Delta-G solvation = -4201.331699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10571 -40.67261 -39.29328 -36.44656 -36.30560 -34.94348 -33.16487 -33.07859 -31.50903 -30.38700 -30.22693 -28.66214 -26.16925 -25.15216 -24.77555 -23.64148 -23.05397 -21.84134 -20.64995 -20.24622 -19.30609 -18.49085 -17.82390 -16.80627 -16.77374 -16.45015 -15.99818 -15.75466 -15.45562 -15.21244 -15.10655 -14.66190 -14.26867 -14.03906 -13.98321 -13.82503 -13.61687 -13.55595 -13.36617 -13.21546 -12.61561 -12.56716 -12.07230 -11.97864 -11.76583 -11.68315 -11.44385 -11.37107 -11.24268 -11.04927 -10.94685 -10.79017 -10.27560 -10.26915 -10.15090 -9.92873 -9.84188 -9.27804 -8.98361 -8.88217 -8.63448 -8.01907 -7.15905 -6.09260 -3.51335 2.33403 2.47804 2.62006 2.82506 2.93304 3.12084 3.24006 3.32954 3.33832 3.57312 4.25540 4.32768 4.40256 4.46695 4.55729 4.87553 4.98927 5.03100 5.05683 5.11740 5.13278 5.26856 5.29521 5.43362 5.47750 5.52620 5.54173 5.57254 5.64941 5.76607 5.77783 5.96656 6.04428 6.15085 6.28900 6.33836 6.44728 6.55976 6.58272 6.81222 7.00038 7.05073 7.12602 7.49409 7.53116 7.62367 8.01761 8.03336 8.15390 8.28601 8.84884 9.47182 9.99311 11.01840 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.003383 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.093391 B = 8274.759413 C = 9782.026388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.010 3.990 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.129 3.871 11 C 0.113 3.887 12 N -0.357 5.357 13 N -0.317 5.317 14 C 0.056 3.944 15 C -0.290 4.290 16 C 0.209 3.791 17 N -0.716 5.716 18 C 0.522 3.478 19 O -0.537 6.537 20 C -0.125 4.125 21 H 0.105 0.895 22 C -0.104 4.104 23 C -0.135 4.135 24 C 0.519 3.481 25 O -0.563 6.563 26 N -0.716 5.716 27 C 0.117 3.883 28 C 0.119 3.881 29 C 0.231 3.769 30 H 0.259 0.741 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.403 0.597 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -8.835 4.096 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.011 4.011 12 N -0.138 5.138 13 N -0.137 5.137 14 C -0.131 4.131 15 C -0.302 4.302 16 C 0.086 3.914 17 N -0.367 5.367 18 C 0.306 3.694 19 O -0.414 6.414 20 C -0.146 4.146 21 H 0.123 0.877 22 C -0.142 4.142 23 C -0.175 4.175 24 C 0.306 3.694 25 O -0.442 6.442 26 N -0.368 5.368 27 C -0.008 4.008 28 C -0.012 4.012 29 C 0.105 3.895 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.192 0.808 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.239 0.761 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.946 -8.990 4.374 12.174 hybrid contribution 0.222 0.925 -0.579 1.114 sum -6.725 -8.064 3.795 11.165 Atomic orbital electron populations 1.69923 1.05230 1.26278 1.53263 1.25008 0.95463 0.98551 0.99914 0.86223 0.79173 0.83058 0.77886 1.21130 1.21224 1.20357 1.19149 0.92492 0.83923 1.43754 0.90901 1.44196 1.29272 1.01356 1.57044 1.21271 0.99296 0.87353 0.92005 1.22556 0.88774 1.01541 0.88180 1.48511 1.24060 1.19410 1.21852 1.77185 1.20043 1.16519 0.99988 1.23683 0.94530 0.95298 0.99539 1.19416 1.05241 1.03414 1.02136 1.19336 0.80434 0.98041 0.93599 1.46262 1.09520 1.42971 1.37932 1.20105 0.83817 0.81280 0.84205 1.90716 1.84628 1.32783 1.33249 1.21645 0.95301 1.02903 0.94795 0.87721 1.21504 0.91056 1.00171 1.01494 1.21688 1.00121 1.04656 0.91014 1.20254 0.82345 0.75153 0.91660 1.90759 1.41955 1.50896 1.60566 1.45431 1.05614 1.73950 1.11772 1.21351 0.86385 1.03641 0.89384 1.22599 0.88490 0.92811 0.97336 1.19917 0.89284 0.92283 0.88063 0.93059 0.89713 0.94622 0.90569 0.90165 0.80757 0.90690 0.91230 0.76660 0.90172 0.89331 0.87736 0.88113 0.76132 0.90074 0.89623 0.92654 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.29 11.07 55.49 0.61 -22.67 16 2 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 3 Si 0.91 20.13 29.58 -169.99 -5.03 15.10 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.26 -6.48 9.66 -15.06 -0.15 -6.62 16 8 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 9 N -0.60 -13.08 3.01 -172.96 -0.52 -13.60 16 10 C 0.13 2.26 6.49 -3.59 -0.02 2.24 16 11 C 0.11 1.81 7.44 -3.88 -0.03 1.78 16 12 N -0.36 -6.40 4.03 -56.94 -0.23 -6.63 16 13 N -0.32 -5.50 12.61 30.70 0.39 -5.11 16 14 C 0.06 0.84 11.97 -17.21 -0.21 0.64 16 15 C -0.29 -4.53 5.46 -105.21 -0.57 -5.11 16 16 C 0.21 2.96 5.95 -5.19 -0.03 2.93 16 17 N -0.72 -8.56 5.46 -61.47 -0.34 -8.89 16 18 C 0.52 6.41 7.14 -10.98 -0.08 6.33 16 19 O -0.54 -8.60 15.89 5.56 0.09 -8.51 16 20 C -0.12 -1.13 2.59 -91.64 -0.24 -1.37 16 21 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 22 C -0.10 -0.95 4.71 -26.52 -0.12 -1.08 16 23 C -0.14 -1.16 6.03 -28.10 -0.17 -1.33 16 24 C 0.52 5.96 7.71 -11.87 -0.09 5.87 16 25 O -0.56 -8.75 17.78 5.56 0.10 -8.65 16 26 N -0.72 -7.01 5.45 -61.38 -0.33 -7.35 16 27 C 0.12 1.07 6.34 -4.48 -0.03 1.04 16 28 C 0.12 2.17 6.71 -82.17 -0.55 1.62 16 29 C 0.23 4.81 5.11 -4.48 -0.02 4.78 16 30 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.17 8.15 -40.82 -0.33 3.83 16 39 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 40 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.40 3.72 8.80 -40.82 -0.36 3.36 16 44 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.11 2.59 6.46 -51.92 -0.34 2.25 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -31.81 385.43 -8.73 -40.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.88 Total: 8.07 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -2.40 Total: 11.89 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.42 Total: -64.26 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.19 Total: -17.16 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.81 -8.73 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069866159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.884 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds