Wall clock time and date at job start Wed Apr 1 2020 04:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48505 * 109.47102 * 269.99805 * 3 2 1 5 5 H 1.48505 * 109.47259 * 29.99557 * 3 2 1 6 6 H 1.48497 * 109.47542 * 149.99958 * 3 2 1 7 7 C 1.38806 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00359 * 164.46180 * 7 2 1 9 9 N 1.36935 * 120.00025 * 344.46124 * 7 2 1 10 10 C 1.47085 * 121.01907 * 155.89621 * 9 7 2 11 11 C 1.53255 * 109.23238 * 116.42424 * 10 9 7 12 12 N 1.46551 * 109.24724 * 45.96259 * 11 10 9 13 13 N 1.39746 * 127.32301 * 161.46991 * 12 11 10 14 14 C 1.31010 * 108.17799 * 179.23559 * 13 12 11 15 15 C 1.40077 * 108.25081 * 0.52898 * 14 13 12 16 16 C 1.50702 * 126.12256 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46698 * 259.68494 * 16 15 14 18 18 C 1.34778 * 119.99768 * 180.02562 * 17 16 15 19 19 O 1.21275 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99879 * 179.97438 * 18 17 16 21 21 H 1.09005 * 109.60133 * 59.67574 * 20 18 17 22 22 C 1.53338 * 109.60506 * 179.97438 * 20 18 17 23 23 C 1.53069 * 108.43009 * 187.45107 * 22 20 18 24 24 C 1.50178 * 109.89103 * 311.10257 * 23 22 20 25 25 O 1.21279 * 118.24771 * 197.58253 * 24 23 22 26 26 N 1.33359 * 123.50605 * 17.85920 * 24 23 22 27 27 C 1.45770 * 124.08871 * 357.20492 * 26 24 23 28 28 C 1.34637 * 107.75250 * 359.66863 * 15 14 13 29 29 C 1.47500 * 121.01082 * 335.87534 * 9 7 2 30 30 H 0.97003 * 119.99496 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.50825 * 356.49441 * 10 9 7 32 32 H 1.08997 * 109.55204 * 236.37931 * 10 9 7 33 33 H 1.09001 * 109.50476 * 286.03123 * 11 10 9 34 34 H 1.08998 * 109.54343 * 165.92211 * 11 10 9 35 35 H 1.08001 * 125.87266 * 180.37166 * 14 13 12 36 36 H 1.08996 * 109.47742 * 139.68842 * 16 15 14 37 37 H 1.09001 * 109.47332 * 19.67718 * 16 15 14 38 38 H 0.97002 * 120.00403 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.67238 * 67.71686 * 22 20 18 40 40 H 1.09005 * 109.67834 * 307.18408 * 22 20 18 41 41 H 1.09000 * 109.40545 * 190.97092 * 23 22 20 42 42 H 1.09007 * 109.32939 * 71.18567 * 23 22 20 43 43 H 0.96994 * 117.94529 * 177.47427 * 26 24 23 44 44 H 1.09001 * 109.51563 * 259.17175 * 27 26 24 45 45 H 1.09004 * 109.15645 * 139.75858 * 27 26 24 46 46 H 1.09002 * 109.95100 * 103.61949 * 29 9 7 47 47 H 1.09010 * 109.95051 * 342.36696 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0607 -1.2193 -0.2500 9 7 1.3632 -2.3662 0.3187 10 6 1.8639 -3.6655 -0.1549 11 6 2.2733 -4.5187 1.0506 12 7 1.2243 -4.4472 2.0715 13 7 1.0198 -5.3254 3.1392 14 6 -0.0115 -4.9004 3.8263 15 6 -0.5033 -3.7432 3.2087 16 6 -1.6836 -2.9254 3.6659 17 7 -2.8563 -3.2656 2.8564 18 6 -4.0350 -2.6541 3.0873 19 8 -4.1249 -1.8225 3.9655 20 6 -5.2411 -3.0036 2.2542 21 1 -5.4659 -4.0646 2.3633 22 6 -6.4442 -2.1731 2.7170 23 6 -7.6908 -2.6783 1.9863 24 6 -7.4128 -2.7832 0.5142 25 8 -8.3563 -2.8507 -0.2448 26 7 -6.1838 -2.8115 -0.0027 27 6 -4.9633 -2.6860 0.7844 28 6 0.2715 -3.4888 2.1374 29 6 0.1430 -2.3553 1.1474 30 1 -0.4849 0.8401 -0.0004 31 1 2.7281 -3.5092 -0.8006 32 1 1.0800 -4.1769 -0.7135 33 1 3.2089 -4.1409 1.4629 34 1 2.4057 -5.5540 0.7365 35 1 -0.4148 -5.3639 4.7144 36 1 -1.4578 -1.8653 3.5507 37 1 -1.8909 -3.1410 4.7141 38 1 -2.7846 -3.9310 2.1542 39 1 -6.2790 -1.1227 2.4775 40 1 -6.5777 -2.2881 3.7927 41 1 -8.5137 -1.9827 2.1506 42 1 -7.9634 -3.6599 2.3741 43 1 -6.0968 -2.9185 -0.9628 44 1 -4.5797 -1.6690 0.7019 45 1 -4.2169 -3.3815 0.4005 46 1 -0.7346 -2.5079 0.5192 47 1 0.0617 -1.4062 1.6773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069866159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:35 Heat of formation + Delta-G solvation = 0.974924 kcal Electronic energy + Delta-G solvation = -31094.465979 eV Core-core repulsion = 26892.121131 eV Total energy + Delta-G solvation = -4202.344848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.40795 -41.59808 -40.32699 -37.95252 -37.30442 -36.11540 -34.62012 -33.96767 -32.95573 -31.82551 -31.30757 -29.91163 -27.77344 -26.38703 -25.64480 -25.12499 -24.03470 -23.25857 -21.62995 -21.55438 -20.24141 -19.83242 -18.79186 -18.52410 -17.80804 -17.55499 -17.14571 -16.86310 -16.59480 -16.42542 -16.29565 -15.99939 -15.48966 -15.30627 -15.06979 -15.00993 -14.87438 -14.70558 -14.64427 -14.34863 -13.94173 -13.80481 -13.33672 -13.07749 -12.94858 -12.92563 -12.77016 -12.70044 -12.60318 -12.34130 -12.22275 -12.01692 -11.96986 -11.90846 -11.57819 -10.94985 -10.83485 -10.75640 -10.16823 -10.04137 -9.97864 -9.35418 -8.92383 -7.98322 -5.40278 0.96854 1.45518 1.49900 1.55831 1.57975 1.60312 1.64343 1.70400 2.27507 2.45485 2.53422 3.21743 3.45592 3.54953 3.57212 3.64125 3.70003 3.77009 3.86097 4.15277 4.21440 4.25443 4.27564 4.32080 4.39664 4.41591 4.50432 4.56557 4.75562 4.79486 4.83745 4.89474 4.91090 4.98258 5.03787 5.05743 5.22222 5.27861 5.40325 5.50584 5.60398 5.75339 5.79761 6.12297 6.22055 6.27815 6.63631 6.84000 7.01715 7.15592 7.29628 7.67264 8.17871 9.10750 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.003383 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.093391 B = 8274.759413 C = 9782.026388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.037 4.037 3 Si 0.960 3.040 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.269 4.269 8 H 0.076 0.924 9 N -0.616 5.616 10 C 0.129 3.871 11 C 0.117 3.883 12 N -0.368 5.368 13 N -0.330 5.330 14 C 0.067 3.933 15 C -0.274 4.274 16 C 0.216 3.784 17 N -0.708 5.708 18 C 0.523 3.477 19 O -0.576 6.576 20 C -0.114 4.114 21 H 0.137 0.863 22 C -0.100 4.100 23 C -0.125 4.125 24 C 0.514 3.486 25 O -0.608 6.608 26 N -0.708 5.708 27 C 0.120 3.880 28 C 0.096 3.904 29 C 0.249 3.751 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.215 0.785 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.409 0.591 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.405 0.595 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.041 0.959 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -10.989 4.978 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.788 3.212 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.398 4.398 8 H 0.093 0.907 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.006 4.006 12 N -0.149 5.149 13 N -0.150 5.150 14 C -0.120 4.120 15 C -0.286 4.286 16 C 0.092 3.908 17 N -0.359 5.359 18 C 0.309 3.691 19 O -0.455 6.455 20 C -0.136 4.136 21 H 0.155 0.845 22 C -0.138 4.138 23 C -0.164 4.164 24 C 0.303 3.697 25 O -0.490 6.490 26 N -0.358 5.358 27 C -0.004 4.004 28 C -0.036 4.036 29 C 0.122 3.878 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.231 0.769 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.241 0.759 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.059 0.941 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.708 -11.186 5.236 14.055 hybrid contribution 0.217 1.554 -0.831 1.776 sum -6.491 -9.632 4.405 12.422 Atomic orbital electron populations 1.70050 1.06151 1.26101 1.54787 1.25604 0.96096 1.00916 1.00713 0.85398 0.78097 0.80060 0.77609 1.20940 1.22215 1.19909 1.19439 0.92823 0.85093 1.42435 0.90651 1.44417 1.29472 1.02296 1.57737 1.21416 0.99755 0.85590 0.93040 1.22514 0.88120 1.02807 0.87137 1.48675 1.24267 1.19457 1.22524 1.77179 1.20980 1.16701 1.00115 1.24265 0.93309 0.94447 0.99946 1.19538 1.04795 1.03328 1.00920 1.19168 0.80833 0.96113 0.94731 1.46123 1.08882 1.43036 1.37845 1.20583 0.84392 0.80290 0.83798 1.90704 1.85248 1.34409 1.35148 1.21614 0.93558 1.04703 0.93701 0.84538 1.21450 0.91297 0.99179 1.01861 1.21678 0.99845 1.06209 0.88707 1.20784 0.82029 0.74197 0.92658 1.90742 1.43271 1.53221 1.61811 1.45418 1.05489 1.72862 1.12071 1.21342 0.86340 1.03132 0.89623 1.22255 0.90262 0.92903 0.98146 1.19392 0.88642 0.91729 0.87990 0.93836 0.88552 0.93946 0.90811 0.87126 0.76901 0.93696 0.89670 0.75488 0.91978 0.88779 0.87109 0.85604 0.75886 0.91962 0.87807 0.94093 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.26 11.07 21.65 0.24 -49.02 16 2 C -0.04 -1.87 5.00 84.86 0.42 -1.44 16 3 Si 0.96 42.01 29.58 68.60 2.03 44.04 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.27 -13.25 9.66 84.03 0.81 -12.43 16 8 H 0.08 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.62 -27.16 3.01 -701.13 -2.11 -29.27 16 10 C 0.13 4.37 6.49 86.35 0.56 4.94 16 11 C 0.12 3.52 7.44 86.45 0.64 4.16 16 12 N -0.37 -12.55 4.03 -334.05 -1.35 -13.89 16 13 N -0.33 -10.52 12.61 -56.79 -0.72 -11.24 16 14 C 0.07 1.79 11.97 85.26 1.02 2.81 16 15 C -0.27 -8.15 5.46 -20.24 -0.11 -8.26 16 16 C 0.22 5.93 5.95 85.63 0.51 6.44 16 17 N -0.71 -16.04 5.46 -466.78 -2.55 -18.59 16 18 C 0.52 12.31 7.14 87.66 0.63 12.94 16 19 O -0.58 -18.29 15.89 -3.02 -0.05 -18.34 16 20 C -0.11 -1.86 2.59 -11.45 -0.03 -1.89 16 21 H 0.14 1.45 8.12 -2.38 -0.02 1.43 16 22 C -0.10 -1.68 4.71 30.73 0.14 -1.54 16 23 C -0.13 -1.91 6.03 29.71 0.18 -1.73 16 24 C 0.51 11.34 7.71 87.71 0.68 12.01 16 25 O -0.61 -18.75 17.78 -3.03 -0.05 -18.80 16 26 N -0.71 -13.24 5.45 -467.28 -2.55 -15.79 16 27 C 0.12 2.07 6.34 86.49 0.55 2.62 16 28 C 0.10 3.42 6.71 41.30 0.28 3.70 16 29 C 0.25 10.60 5.11 85.55 0.44 11.03 16 30 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.10 2.99 7.94 -2.38 -0.02 2.98 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.21 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.41 7.76 8.15 -92.71 -0.76 7.00 16 39 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 40 H 0.09 1.54 7.90 -2.38 -0.02 1.52 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.41 7.26 8.80 -92.71 -0.82 6.45 16 44 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 45 H 0.10 1.44 7.89 -2.39 -0.02 1.42 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 3.59 6.46 -2.38 -0.02 3.58 16 Total: -1.00 -70.18 385.43 -0.94 -71.11 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.55 Total: 26.44 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 6.72 Total: 33.35 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -9.03 Total: -137.81 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.10 Total: -37.14 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.18 -0.94 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069866159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.087 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds