Wall clock time and date at job start Wed Apr 1 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47163 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46735 * 29.99942 * 3 2 1 6 6 H 1.48494 * 109.47524 * 149.99439 * 3 2 1 7 7 C 1.38813 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64777 * 359.96462 * 9 7 2 11 11 C 1.54328 * 107.26894 * 181.09325 * 10 9 7 12 12 C 1.55160 * 102.94527 * 22.19136 * 11 10 9 13 13 H 1.09003 * 111.03121 * 82.58582 * 12 11 10 14 14 C 1.50692 * 111.00257 * 206.42315 * 12 11 10 15 15 N 1.30836 * 125.90192 * 53.95626 * 14 12 11 16 16 N 1.40084 * 108.20904 * 180.14351 * 15 14 12 17 17 H 0.97001 * 126.04219 * 179.85882 * 16 15 14 18 18 C 1.34947 * 107.92164 * 359.58781 * 16 15 14 19 19 C 1.35317 * 107.74962 * 0.24402 * 18 16 15 20 20 C 1.50698 * 126.04222 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.47059 * 259.97403 * 20 19 18 22 22 C 1.34776 * 120.00098 * 180.02562 * 21 20 19 23 23 O 1.21278 * 119.99857 * 359.97438 * 22 21 20 24 24 C 1.50704 * 120.00133 * 180.02562 * 22 21 20 25 25 H 1.09001 * 110.20998 * 320.47026 * 24 22 21 26 26 C 1.54477 * 110.24745 * 82.49223 * 24 22 21 27 27 C 1.54629 * 101.76265 * 144.41684 * 26 24 22 28 28 C 1.51282 * 104.19522 * 335.20231 * 27 26 24 29 29 O 1.21281 * 124.94048 * 196.23073 * 28 27 26 30 30 N 1.34420 * 110.11680 * 16.25425 * 28 27 26 31 31 C 1.47429 * 125.64873 * 180.02562 * 9 7 2 32 32 H 0.96998 * 119.99927 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.88349 * 300.50490 * 10 9 7 34 34 H 1.08996 * 109.88181 * 61.51938 * 10 9 7 35 35 H 1.09006 * 110.71750 * 263.82706 * 11 10 9 36 36 H 1.08999 * 110.71603 * 140.55719 * 11 10 9 37 37 H 1.08006 * 126.12506 * 180.22115 * 18 16 15 38 38 H 1.08997 * 109.47285 * 19.97749 * 20 19 18 39 39 H 1.09001 * 109.47152 * 139.97535 * 20 19 18 40 40 H 0.97004 * 119.99963 * 359.97438 * 21 20 19 41 41 H 1.09005 * 110.97091 * 262.53531 * 26 24 22 42 42 H 1.09000 * 110.96950 * 26.29731 * 26 24 22 43 43 H 1.08998 * 110.48618 * 216.52042 * 27 26 24 44 44 H 1.09002 * 110.48661 * 93.87899 * 27 26 24 45 45 H 0.97000 * 124.34875 * 180.42962 * 30 28 27 46 46 H 1.08999 * 110.36520 * 37.00303 * 31 9 7 47 47 H 1.08997 * 110.36572 * 274.67606 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0007 11 6 -0.4483 -4.0441 0.0283 12 6 0.8525 -4.6560 0.6121 13 1 0.8588 -4.5962 1.7005 14 6 1.0343 -6.0790 0.1510 15 7 1.0326 -6.4891 -1.0914 16 7 1.2282 -7.8762 -1.0948 17 1 1.2689 -8.4450 -1.8795 18 6 1.3560 -8.2807 0.1863 19 6 1.2401 -7.1889 0.9771 20 6 1.3193 -7.1715 2.4819 21 7 -0.0338 -7.1236 3.0416 22 6 -0.2100 -7.1002 4.3776 23 8 0.7515 -7.1194 5.1165 24 6 -1.6019 -7.0515 4.9533 25 1 -2.2321 -6.3896 4.3593 26 6 -2.2102 -8.4706 5.0021 27 6 -3.0370 -8.4144 6.3076 28 6 -2.3600 -7.3399 7.1295 29 8 -2.5174 -7.1738 8.3206 30 7 -1.5589 -6.5956 6.3477 31 6 1.9335 -3.7312 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 -0.5568 -2.0519 0.8845 34 1 -0.5553 -2.0823 -0.8996 35 1 -0.6324 -4.4184 -0.9788 36 1 -1.2978 -4.2512 0.6792 37 1 1.5210 -9.2944 0.5205 38 1 1.8246 -8.0725 2.8296 39 1 1.8779 -6.2936 2.8063 40 1 -0.8028 -7.1078 2.4506 41 1 -2.8535 -8.6491 4.1403 42 1 -1.4290 -9.2279 5.0673 43 1 -2.9976 -9.3726 6.8256 44 1 -4.0694 -8.1374 6.0937 45 1 -1.0213 -5.8530 6.6645 46 1 2.8334 -3.7402 0.6145 47 1 2.1658 -4.0424 -1.0190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070401925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:51 Heat of formation + Delta-G solvation = 31.406089 kcal Electronic energy + Delta-G solvation = -30353.721416 eV Core-core repulsion = 26152.696162 eV Total energy + Delta-G solvation = -4201.025253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47109 -40.97950 -39.21421 -37.34081 -36.46721 -35.19095 -33.13124 -31.74513 -31.43115 -30.92399 -29.14462 -28.69836 -27.53543 -25.67512 -24.65560 -22.98188 -22.15649 -20.92478 -20.71345 -20.35777 -20.02772 -18.87158 -18.46518 -17.63101 -17.55770 -16.80452 -16.15738 -15.99026 -15.43153 -14.97092 -14.93074 -14.54812 -14.46837 -14.26150 -13.98129 -13.92192 -13.64073 -13.53765 -13.16214 -12.97154 -12.70099 -12.37826 -12.28245 -12.20252 -11.86054 -11.73838 -11.59440 -10.98465 -10.85627 -10.80788 -10.64005 -10.39588 -10.16689 -10.12113 -9.98391 -9.77474 -9.65312 -9.42483 -9.27234 -9.20133 -8.71444 -8.56722 -6.79911 -5.68577 -3.01515 1.72236 2.25780 2.28209 2.47506 2.77760 2.93493 3.30923 3.42546 3.47618 3.49352 3.91964 3.97334 4.30169 4.49785 4.52811 4.56922 4.62990 4.64400 4.96128 5.01489 5.17881 5.19478 5.30734 5.34513 5.44385 5.45092 5.54196 5.62806 5.75884 5.85852 5.89825 5.97649 6.18560 6.34818 6.42113 6.44580 6.51729 6.64381 6.69525 6.72722 6.93661 7.17282 7.25517 7.58470 7.65048 7.68928 7.85151 7.90126 7.98808 8.28572 9.25105 9.85181 10.51128 11.43204 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.002865 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.669204 B = 9770.995704 C =11982.370070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.130 4.130 12 C -0.032 4.032 13 H 0.091 0.909 14 C 0.122 3.878 15 N -0.281 5.281 16 N -0.480 5.480 17 H 0.439 0.561 18 C 0.077 3.923 19 C -0.264 4.264 20 C 0.202 3.798 21 N -0.716 5.716 22 C 0.505 3.495 23 O -0.530 6.530 24 C 0.112 3.888 25 H 0.109 0.891 26 C -0.120 4.120 27 C -0.155 4.155 28 C 0.522 3.478 29 O -0.532 6.532 30 N -0.708 5.708 31 C 0.149 3.851 32 H 0.252 0.748 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.175 0.825 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.418 0.582 46 H 0.038 0.962 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -23.756 3.140 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.169 4.169 12 C -0.053 4.053 13 H 0.109 0.891 14 C -0.046 4.046 15 N -0.102 5.102 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.072 4.072 19 C -0.276 4.276 20 C 0.078 3.922 21 N -0.368 5.368 22 C 0.288 3.712 23 O -0.405 6.405 24 C 0.002 3.998 25 H 0.127 0.873 26 C -0.159 4.159 27 C -0.195 4.195 28 C 0.308 3.692 29 O -0.409 6.409 30 N -0.364 5.364 31 C 0.022 3.978 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.192 0.808 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.238 0.762 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.258 0.742 46 H 0.056 0.944 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.011 -23.197 3.049 23.927 hybrid contribution 0.548 0.602 -0.014 0.815 sum -4.462 -22.595 3.035 23.230 Atomic orbital electron populations 1.69958 1.04846 1.24952 1.57247 1.24786 0.95727 0.97611 1.02338 0.86125 0.78614 0.83536 0.77532 1.21665 1.21689 1.20696 1.19057 0.90450 0.82367 1.43571 0.90468 1.44461 1.01708 0.99778 1.87136 1.21153 0.84371 0.88045 1.01118 1.22928 0.94868 0.99306 0.99802 1.20943 0.98917 0.85567 0.99918 0.89127 1.22284 0.96259 0.96338 0.89729 1.77509 1.24181 0.88082 1.20476 1.46374 1.57842 1.07357 1.07020 0.71765 1.22367 1.00271 0.99614 0.84994 1.19914 1.19416 0.92556 0.95704 1.19415 0.83007 1.02747 0.87006 1.46140 1.09926 1.74560 1.06147 1.20619 0.91002 0.76867 0.82671 1.90761 1.41898 1.48805 1.59082 1.21629 0.94999 0.98422 0.84748 0.87337 1.22607 1.00024 0.94308 0.98913 1.22373 1.01018 1.00130 0.95996 1.20812 0.78892 0.82714 0.86738 1.90776 1.64484 1.71596 1.14015 1.45955 1.47053 1.35345 1.08043 1.21524 0.93593 0.85578 0.97108 0.93812 0.93591 0.93833 0.91864 0.92354 0.80814 0.90941 0.90246 0.76216 0.88030 0.89345 0.87605 0.87239 0.74219 0.94376 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 10 C 0.18 4.25 5.38 -3.06 -0.02 4.24 16 11 C -0.13 -2.34 6.41 -24.89 -0.16 -2.50 16 12 C -0.03 -0.54 3.45 -89.64 -0.31 -0.84 16 13 H 0.09 1.49 7.33 -51.93 -0.38 1.11 16 14 C 0.12 1.70 5.89 -82.41 -0.49 1.21 16 15 N -0.28 -3.98 12.38 33.67 0.42 -3.56 16 16 N -0.48 -4.43 7.36 30.45 0.22 -4.21 16 17 H 0.44 2.58 8.96 -182.61 -1.64 0.95 16 18 C 0.08 0.60 11.90 -17.22 -0.20 0.40 16 19 C -0.26 -2.72 5.47 -105.05 -0.57 -3.30 16 20 C 0.20 1.97 5.65 -5.19 -0.03 1.94 16 21 N -0.72 -5.87 5.55 -61.47 -0.34 -6.22 16 22 C 0.50 4.88 7.01 -10.98 -0.08 4.80 16 23 O -0.53 -7.42 16.58 5.56 0.09 -7.33 16 24 C 0.11 0.78 3.92 -68.16 -0.27 0.52 16 25 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 26 C -0.12 -0.54 6.67 -25.10 -0.17 -0.71 16 27 C -0.15 -0.90 6.86 -26.74 -0.18 -1.09 16 28 C 0.52 5.57 8.43 -10.86 -0.09 5.48 16 29 O -0.53 -8.07 18.03 5.56 0.10 -7.97 16 30 N -0.71 -6.86 5.47 -53.88 -0.29 -7.15 16 31 C 0.15 3.12 6.69 -2.54 -0.02 3.11 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 34 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 35 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.96 7.78 -51.93 -0.40 0.55 16 40 H 0.40 2.56 8.46 -40.82 -0.35 2.21 16 41 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.09 0.44 7.91 -51.93 -0.41 0.03 16 43 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.42 4.36 8.96 -40.82 -0.37 3.99 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.55 7.94 -51.93 -0.41 0.14 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -38.12 390.69 -9.84 -47.96 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.06 Total: 1.44 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.83 Total: 6.42 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.00 Total: -63.64 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.19 Total: -15.29 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.12 -9.84 -47.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070401925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.363 kcal (2) G-P(sol) polarization free energy of solvation -38.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds