Wall clock time and date at job start Wed Apr 1 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47163 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46735 * 29.99942 * 3 2 1 6 6 H 1.48494 * 109.47524 * 149.99439 * 3 2 1 7 7 C 1.38813 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64777 * 359.96462 * 9 7 2 11 11 C 1.54328 * 107.26894 * 181.09325 * 10 9 7 12 12 C 1.55160 * 102.94527 * 22.19136 * 11 10 9 13 13 H 1.09003 * 111.03121 * 82.58582 * 12 11 10 14 14 C 1.50692 * 111.00257 * 206.42315 * 12 11 10 15 15 N 1.30836 * 125.90192 * 53.95626 * 14 12 11 16 16 N 1.40084 * 108.20904 * 180.14351 * 15 14 12 17 17 H 0.97001 * 126.04219 * 179.85882 * 16 15 14 18 18 C 1.34947 * 107.92164 * 359.58781 * 16 15 14 19 19 C 1.35317 * 107.74962 * 0.24402 * 18 16 15 20 20 C 1.50698 * 126.04222 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.47059 * 259.97403 * 20 19 18 22 22 C 1.34776 * 120.00098 * 180.02562 * 21 20 19 23 23 O 1.21278 * 119.99857 * 359.97438 * 22 21 20 24 24 C 1.50704 * 120.00133 * 180.02562 * 22 21 20 25 25 H 1.09001 * 110.20998 * 320.47026 * 24 22 21 26 26 C 1.54477 * 110.24745 * 82.49223 * 24 22 21 27 27 C 1.54629 * 101.76265 * 144.41684 * 26 24 22 28 28 C 1.51282 * 104.19522 * 335.20231 * 27 26 24 29 29 O 1.21281 * 124.94048 * 196.23073 * 28 27 26 30 30 N 1.34420 * 110.11680 * 16.25425 * 28 27 26 31 31 C 1.47429 * 125.64873 * 180.02562 * 9 7 2 32 32 H 0.96998 * 119.99927 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.88349 * 300.50490 * 10 9 7 34 34 H 1.08996 * 109.88181 * 61.51938 * 10 9 7 35 35 H 1.09006 * 110.71750 * 263.82706 * 11 10 9 36 36 H 1.08999 * 110.71603 * 140.55719 * 11 10 9 37 37 H 1.08006 * 126.12506 * 180.22115 * 18 16 15 38 38 H 1.08997 * 109.47285 * 19.97749 * 20 19 18 39 39 H 1.09001 * 109.47152 * 139.97535 * 20 19 18 40 40 H 0.97004 * 119.99963 * 359.97438 * 21 20 19 41 41 H 1.09005 * 110.97091 * 262.53531 * 26 24 22 42 42 H 1.09000 * 110.96950 * 26.29731 * 26 24 22 43 43 H 1.08998 * 110.48618 * 216.52042 * 27 26 24 44 44 H 1.09002 * 110.48661 * 93.87899 * 27 26 24 45 45 H 0.97000 * 124.34875 * 180.42962 * 30 28 27 46 46 H 1.08999 * 110.36520 * 37.00303 * 31 9 7 47 47 H 1.08997 * 110.36572 * 274.67606 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0007 11 6 -0.4483 -4.0441 0.0283 12 6 0.8525 -4.6560 0.6121 13 1 0.8588 -4.5962 1.7005 14 6 1.0343 -6.0790 0.1510 15 7 1.0326 -6.4891 -1.0914 16 7 1.2282 -7.8762 -1.0948 17 1 1.2689 -8.4450 -1.8795 18 6 1.3560 -8.2807 0.1863 19 6 1.2401 -7.1889 0.9771 20 6 1.3193 -7.1715 2.4819 21 7 -0.0338 -7.1236 3.0416 22 6 -0.2100 -7.1002 4.3776 23 8 0.7515 -7.1194 5.1165 24 6 -1.6019 -7.0515 4.9533 25 1 -2.2321 -6.3896 4.3593 26 6 -2.2102 -8.4706 5.0021 27 6 -3.0370 -8.4144 6.3076 28 6 -2.3600 -7.3399 7.1295 29 8 -2.5174 -7.1738 8.3206 30 7 -1.5589 -6.5956 6.3477 31 6 1.9335 -3.7312 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 -0.5568 -2.0519 0.8845 34 1 -0.5553 -2.0823 -0.8996 35 1 -0.6324 -4.4184 -0.9788 36 1 -1.2978 -4.2512 0.6792 37 1 1.5210 -9.2944 0.5205 38 1 1.8246 -8.0725 2.8296 39 1 1.8779 -6.2936 2.8063 40 1 -0.8028 -7.1078 2.4506 41 1 -2.8535 -8.6491 4.1403 42 1 -1.4290 -9.2279 5.0673 43 1 -2.9976 -9.3726 6.8256 44 1 -4.0694 -8.1374 6.0937 45 1 -1.0213 -5.8530 6.6645 46 1 2.8334 -3.7402 0.6145 47 1 2.1658 -4.0424 -1.0190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070401925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:50 Heat of formation + Delta-G solvation = -0.078590 kcal Electronic energy + Delta-G solvation = -30355.086694 eV Core-core repulsion = 26152.696162 eV Total energy + Delta-G solvation = -4202.390531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32343 -41.68982 -40.03191 -39.02233 -37.26194 -36.00611 -34.87656 -32.81285 -32.26722 -31.81177 -30.87430 -29.39235 -29.10663 -26.63170 -26.36246 -23.54470 -23.40786 -21.95552 -21.62548 -21.44092 -21.18713 -20.09195 -19.22095 -18.80733 -18.38296 -18.19142 -16.91836 -16.80619 -16.71727 -16.36409 -16.07234 -15.75871 -15.72809 -15.30843 -14.96310 -14.68799 -14.63557 -14.12961 -14.09054 -14.01355 -13.86381 -13.64228 -13.54542 -13.50793 -13.16575 -12.86707 -12.80816 -12.71524 -12.27060 -12.02749 -12.02567 -11.90609 -11.73118 -11.61894 -11.23464 -11.17876 -10.98414 -10.70046 -10.24131 -10.18530 -10.02147 -9.49829 -8.89021 -7.84584 -5.19946 1.00723 1.43924 1.45761 1.47364 1.55836 1.55958 1.60467 2.06626 2.22454 2.49773 2.61606 3.33329 3.36647 3.49705 3.55722 3.76102 3.82500 3.91703 4.06312 4.09565 4.15703 4.19941 4.21166 4.37177 4.54367 4.60166 4.69669 4.73551 4.82299 4.85813 4.89033 5.02712 5.04218 5.08174 5.11217 5.18952 5.37998 5.44891 5.47846 5.61668 5.69466 5.70309 5.78708 5.97132 6.20648 6.55507 6.60452 6.81413 7.11370 7.14808 7.27078 7.77774 8.42381 9.25564 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.002865 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.669204 B = 9770.995704 C =11982.370070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.627 5.627 10 C 0.185 3.815 11 C -0.111 4.111 12 C -0.010 4.010 13 H 0.093 0.907 14 C 0.106 3.894 15 N -0.324 5.324 16 N -0.465 5.465 17 H 0.455 0.545 18 C 0.111 3.889 19 C -0.271 4.271 20 C 0.207 3.793 21 N -0.701 5.701 22 C 0.505 3.495 23 O -0.580 6.580 24 C 0.110 3.890 25 H 0.137 0.863 26 C -0.107 4.107 27 C -0.145 4.145 28 C 0.508 3.492 29 O -0.591 6.591 30 N -0.715 5.715 31 C 0.145 3.855 32 H 0.247 0.753 33 H 0.016 0.984 34 H 0.004 0.996 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.226 0.774 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.416 0.584 41 H 0.144 0.856 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.134 0.866 45 H 0.408 0.592 46 H 0.036 0.964 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -27.066 2.132 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.060 3.940 11 C -0.150 4.150 12 C -0.032 4.032 13 H 0.111 0.889 14 C -0.061 4.061 15 N -0.147 5.147 16 N -0.173 5.173 17 H 0.302 0.698 18 C -0.040 4.040 19 C -0.283 4.283 20 C 0.083 3.917 21 N -0.353 5.353 22 C 0.290 3.710 23 O -0.460 6.460 24 C 0.001 3.999 25 H 0.154 0.846 26 C -0.145 4.145 27 C -0.184 4.184 28 C 0.297 3.703 29 O -0.472 6.472 30 N -0.368 5.368 31 C 0.019 3.981 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.162 0.838 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.152 0.848 45 H 0.246 0.754 46 H 0.054 0.946 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.520 -26.547 1.955 27.186 hybrid contribution 0.791 1.575 0.205 1.774 sum -4.729 -24.972 2.160 25.508 Atomic orbital electron populations 1.70178 1.06154 1.25240 1.58181 1.25624 0.96670 1.00871 1.02563 0.85098 0.77693 0.79212 0.77449 1.21336 1.21842 1.19495 1.19432 0.90921 0.83823 1.43144 0.90352 1.44779 1.02669 1.00884 1.86963 1.20929 0.83490 0.91864 0.97708 1.22721 0.96788 0.94660 1.00826 1.20579 0.95976 0.87025 0.99578 0.88893 1.21797 0.98261 0.95321 0.90730 1.77409 1.25543 0.90949 1.20829 1.46352 1.56552 1.05835 1.08531 0.69850 1.23028 0.96560 1.00903 0.83479 1.19866 1.20581 0.92166 0.95710 1.19269 0.83495 1.02117 0.86820 1.46014 1.09975 1.73469 1.05865 1.21066 0.91492 0.75726 0.82691 1.90747 1.43688 1.51250 1.60266 1.21940 0.93779 1.00908 0.83252 0.84577 1.22720 1.00092 0.92099 0.99616 1.22431 1.01880 0.98489 0.95648 1.21759 0.78737 0.83457 0.86385 1.90732 1.66524 1.73312 1.16635 1.46208 1.46319 1.34805 1.09463 1.21627 0.94968 0.84595 0.96886 0.94369 0.96625 0.97822 0.91831 0.89142 0.75767 0.89477 0.93212 0.74681 0.83820 0.89580 0.86682 0.84776 0.75422 0.94551 0.96586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 2 C -0.06 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.75 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.24 -14.12 10.28 84.03 0.86 -13.26 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -33.19 3.39 -692.02 -2.35 -35.54 16 10 C 0.19 9.21 5.38 86.73 0.47 9.67 16 11 C -0.11 -3.95 6.41 31.79 0.20 -3.75 16 12 C -0.01 -0.34 3.45 -10.16 -0.04 -0.38 16 13 H 0.09 3.00 7.33 -2.39 -0.02 2.98 16 14 C 0.11 2.73 5.89 43.10 0.25 2.99 16 15 N -0.32 -8.46 12.38 -47.39 -0.59 -9.05 16 16 N -0.46 -6.73 7.36 -57.59 -0.42 -7.15 16 17 H 0.45 3.46 8.96 -213.33 -1.91 1.55 16 18 C 0.11 1.16 11.90 83.54 0.99 2.15 16 19 C -0.27 -4.69 5.47 -20.14 -0.11 -4.80 16 20 C 0.21 3.53 5.65 85.63 0.48 4.02 16 21 N -0.70 -9.49 5.55 -466.79 -2.59 -12.08 16 22 C 0.50 8.84 7.01 87.66 0.61 9.46 16 23 O -0.58 -16.08 16.58 -3.02 -0.05 -16.13 16 24 C 0.11 1.26 3.92 44.70 0.18 1.44 16 25 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 26 C -0.11 -0.53 6.67 31.65 0.21 -0.31 16 27 C -0.14 -1.28 6.86 30.59 0.21 -1.07 16 28 C 0.51 10.68 8.43 87.90 0.74 11.42 16 29 O -0.59 -18.65 18.03 -3.03 -0.05 -18.70 16 30 N -0.71 -13.61 5.47 -442.98 -2.42 -16.03 16 31 C 0.15 6.21 6.69 86.85 0.58 6.79 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.02 0.85 7.38 -2.39 -0.02 0.84 16 34 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16 35 H 0.06 2.27 7.85 -2.38 -0.02 2.26 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.23 0.07 8.06 -2.91 -0.02 0.04 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.17 7.78 -2.39 -0.02 1.15 16 40 H 0.42 3.59 8.46 -92.71 -0.78 2.80 16 41 H 0.14 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.09 0.53 7.91 -2.39 -0.02 0.51 16 43 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.41 8.94 8.96 -92.71 -0.83 8.11 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.02 0.73 7.94 -2.39 -0.02 0.71 16 Total: -1.00 -90.83 390.69 -2.59 -93.42 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.49 Total: 8.88 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 6.12 Total: 21.10 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -8.15 Total: -137.34 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.10 Total: -34.83 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -90.83 -2.59 -93.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070401925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.346 kcal (2) G-P(sol) polarization free energy of solvation -90.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds