Wall clock time and date at job start Wed Apr 1 2020 05:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48498 * 109.46829 * 269.99621 * 3 2 1 5 5 H 1.48507 * 109.46949 * 29.99276 * 3 2 1 6 6 H 1.48498 * 109.47419 * 149.99272 * 3 2 1 7 7 C 1.38814 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64704 * 359.93688 * 9 7 2 11 11 C 1.54330 * 107.26866 * 181.10762 * 10 9 7 12 12 C 1.55157 * 102.94049 * 22.19588 * 11 10 9 13 13 H 1.09002 * 111.00633 * 82.57450 * 12 11 10 14 14 C 1.50701 * 111.00134 * 206.38239 * 12 11 10 15 15 N 1.30840 * 125.89515 * 60.02338 * 14 12 11 16 16 N 1.40086 * 108.20105 * 179.97438 * 15 14 12 17 17 H 0.97001 * 126.03627 * 179.97438 * 16 15 14 18 18 C 1.34946 * 107.92556 * 0.02562 * 16 15 14 19 19 C 1.35308 * 107.74855 * 359.74765 * 18 16 15 20 20 C 1.50702 * 126.04203 * 180.27642 * 19 18 16 21 21 N 1.46500 * 109.47006 * 260.14136 * 20 19 18 22 22 C 1.34783 * 120.00168 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99702 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.00258 * 180.02562 * 22 21 20 25 25 H 1.09007 * 110.43198 * 298.91124 * 24 22 21 26 26 C 1.54624 * 110.48858 * 176.23281 * 24 22 21 27 27 C 1.54483 * 101.76112 * 266.11691 * 26 24 22 28 28 N 1.46765 * 105.47460 * 334.58432 * 27 26 24 29 29 C 1.34417 * 111.29980 * 17.01754 * 28 27 26 30 30 O 1.21278 * 124.94088 * 179.63428 * 29 28 27 31 31 C 1.47426 * 125.64918 * 179.97438 * 9 7 2 32 32 H 0.96999 * 119.99911 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88042 * 61.69391 * 10 9 7 34 34 H 1.08996 * 109.88551 * 300.52532 * 10 9 7 35 35 H 1.08996 * 110.71860 * 263.82642 * 11 10 9 36 36 H 1.09002 * 110.71679 * 140.55640 * 11 10 9 37 37 H 1.08004 * 126.12196 * 180.02562 * 18 16 15 38 38 H 1.08993 * 109.47125 * 20.14051 * 20 19 18 39 39 H 1.09005 * 109.47287 * 140.14225 * 20 19 18 40 40 H 0.97004 * 120.00181 * 359.97438 * 21 20 19 41 41 H 1.09000 * 110.97106 * 24.23386 * 26 24 22 42 42 H 1.09000 * 110.97230 * 148.00287 * 26 24 22 43 43 H 1.08998 * 110.24783 * 215.58231 * 27 26 24 44 44 H 1.09004 * 110.31778 * 93.62097 * 27 26 24 45 45 H 0.96998 * 124.35012 * 196.99248 * 28 27 26 46 46 H 1.09004 * 110.36498 * 36.98054 * 31 9 7 47 47 H 1.09000 * 110.45813 * 274.70804 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0013 11 6 -0.4485 -4.0441 0.0295 12 6 0.8521 -4.6556 0.6141 13 1 0.8576 -4.5949 1.7025 14 6 1.0337 -6.0793 0.1546 15 7 1.1434 -6.4765 -1.0872 16 7 1.2978 -7.8688 -1.0893 17 1 1.4011 -8.4304 -1.8734 18 6 1.2763 -8.2910 0.1923 19 6 1.1193 -7.2037 0.9822 20 6 1.0472 -7.2042 2.4875 21 7 -0.3531 -7.1171 2.9092 22 6 -0.6622 -7.1025 4.2210 23 8 0.2190 -7.1610 5.0523 24 6 -2.1026 -7.0136 4.6549 25 1 -2.5520 -6.0881 4.2948 26 6 -2.2109 -7.1078 6.1945 27 6 -2.4577 -8.6188 6.4009 28 7 -3.0702 -9.0896 5.1530 29 6 -2.8812 -8.2101 4.1542 30 8 -3.2779 -8.3544 3.0172 31 6 1.9334 -3.7312 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5547 -2.0852 -0.9008 34 1 -0.5572 -2.0514 0.8846 35 1 -0.6322 -4.4188 -0.9774 36 1 -1.2982 -4.2509 0.6801 37 1 1.3721 -9.3132 0.5276 38 1 1.4858 -8.1249 2.8719 39 1 1.5981 -6.3485 2.8780 40 1 -1.0579 -7.0700 2.2444 41 1 -1.2815 -6.7958 6.6708 42 1 -3.0525 -6.5213 6.5630 43 1 -3.1368 -8.7791 7.2383 44 1 -1.5143 -9.1359 6.5766 45 1 -3.5494 -9.9278 5.0607 46 1 2.8335 -3.7402 0.6153 47 1 2.1668 -4.0437 -1.0173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070420247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:13 Heat of formation + Delta-G solvation = 1.946851 kcal Electronic energy + Delta-G solvation = -30772.376650 eV Core-core repulsion = 26570.073948 eV Total energy + Delta-G solvation = -4202.302702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39120 -41.87667 -39.84275 -39.04554 -37.42996 -35.98623 -34.88229 -32.94584 -32.59600 -31.56757 -30.91725 -29.17581 -28.91165 -26.68299 -26.54476 -23.53070 -23.26422 -22.44839 -21.95584 -21.41823 -20.85517 -20.12627 -19.13884 -18.80957 -18.51609 -18.32119 -16.95035 -16.81488 -16.74917 -16.33029 -16.01557 -15.79252 -15.64690 -15.42634 -15.01947 -14.70262 -14.59490 -14.45468 -14.11818 -13.99067 -13.85580 -13.71513 -13.59623 -13.56402 -13.14113 -12.84864 -12.70866 -12.39537 -12.31548 -12.25049 -12.01490 -11.93726 -11.74988 -11.65004 -11.30321 -11.23214 -10.94945 -10.69951 -10.28789 -10.11516 -10.06410 -9.57618 -8.89210 -7.83222 -5.19382 0.93684 1.22580 1.46075 1.48214 1.49587 1.57774 1.62221 2.01076 2.34578 2.50639 2.55069 3.27263 3.34391 3.47440 3.51718 3.70704 3.76834 3.86038 4.02402 4.07058 4.13606 4.16364 4.27216 4.32609 4.52970 4.56208 4.63118 4.69721 4.76283 4.80590 4.86083 4.99839 5.03620 5.07032 5.13072 5.15939 5.35143 5.43102 5.45174 5.56096 5.66468 5.74489 5.76343 5.93989 6.20254 6.48278 6.49206 6.74946 7.11223 7.11290 7.16788 7.77440 8.43216 9.27308 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002901 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.018115 B = 9650.998417 C =11146.695881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.626 5.626 10 C 0.189 3.811 11 C -0.114 4.114 12 C -0.011 4.011 13 H 0.093 0.907 14 C 0.106 3.894 15 N -0.322 5.322 16 N -0.465 5.465 17 H 0.455 0.545 18 C 0.106 3.894 19 C -0.275 4.275 20 C 0.207 3.793 21 N -0.712 5.712 22 C 0.529 3.471 23 O -0.560 6.560 24 C -0.155 4.155 25 H 0.141 0.859 26 C -0.117 4.117 27 C 0.099 3.901 28 N -0.715 5.715 29 C 0.527 3.473 30 O -0.563 6.563 31 C 0.147 3.853 32 H 0.247 0.753 33 H 0.004 0.996 34 H 0.018 0.982 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.223 0.777 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.408 0.592 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.422 0.578 46 H 0.040 0.960 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -25.521 12.219 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.064 3.936 11 C -0.153 4.153 12 C -0.032 4.032 13 H 0.111 0.889 14 C -0.061 4.061 15 N -0.145 5.145 16 N -0.172 5.172 17 H 0.302 0.698 18 C -0.044 4.044 19 C -0.287 4.287 20 C 0.083 3.917 21 N -0.363 5.363 22 C 0.314 3.686 23 O -0.439 6.439 24 C -0.180 4.180 25 H 0.159 0.841 26 C -0.155 4.155 27 C -0.024 4.024 28 N -0.370 5.370 29 C 0.312 3.688 30 O -0.442 6.442 31 C 0.022 3.978 32 H 0.057 0.943 33 H 0.022 0.978 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.262 0.738 46 H 0.058 0.942 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.228 -24.990 11.000 27.629 hybrid contribution -0.151 0.518 -0.407 0.676 sum -4.380 -24.472 10.594 27.024 Atomic orbital electron populations 1.70193 1.06278 1.25295 1.58163 1.25674 0.96681 1.01020 1.02491 0.85047 0.77698 0.78968 0.77420 1.21424 1.21771 1.19281 1.19461 0.90980 0.83687 1.43214 0.90128 1.44773 1.02489 1.00946 1.86995 1.20884 0.83716 0.91251 0.97779 1.22723 0.96745 0.95295 1.00500 1.20602 0.96092 0.86876 0.99651 0.88853 1.21855 0.98094 0.95506 0.90692 1.77386 1.25518 0.90794 1.20845 1.46323 1.57114 1.05444 1.08364 0.69836 1.22992 0.96888 1.00856 0.83690 1.19947 1.20627 0.92036 0.96055 1.19361 0.81680 1.02500 0.88151 1.46251 1.09759 1.73245 1.07040 1.20055 0.90212 0.75843 0.82496 1.90685 1.49802 1.51157 1.52228 1.22246 0.93332 1.01029 1.01363 0.84089 1.22681 1.05832 0.96839 0.90128 1.22328 0.99562 0.94123 0.86380 1.46182 1.56328 1.22939 1.11541 1.20471 0.78756 0.84993 0.84576 1.90778 1.53849 1.79146 1.20399 1.21607 0.94791 0.84444 0.97001 0.94348 0.97752 0.96402 0.92150 0.89885 0.76099 0.89363 0.92014 0.75669 0.87932 0.86897 0.86494 0.90527 0.73784 0.94177 0.96400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 10.31 21.65 0.22 -58.78 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -14.41 10.28 84.03 0.86 -13.55 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -34.36 3.39 -691.95 -2.35 -36.71 16 10 C 0.19 9.93 5.37 86.73 0.47 10.39 16 11 C -0.11 -4.58 6.41 31.78 0.20 -4.38 16 12 C -0.01 -0.41 3.45 -10.14 -0.03 -0.44 16 13 H 0.09 3.39 7.27 -2.39 -0.02 3.37 16 14 C 0.11 3.28 5.90 43.10 0.25 3.53 16 15 N -0.32 -10.02 12.38 -47.38 -0.59 -10.61 16 16 N -0.46 -9.23 7.36 -57.59 -0.42 -9.66 16 17 H 0.45 5.69 8.96 -213.33 -1.91 3.77 16 18 C 0.11 1.77 11.90 83.54 0.99 2.77 16 19 C -0.27 -6.43 5.47 -20.15 -0.11 -6.54 16 20 C 0.21 4.63 5.69 85.63 0.49 5.11 16 21 N -0.71 -16.08 5.48 -466.79 -2.56 -18.63 16 22 C 0.53 12.04 7.19 87.65 0.63 12.67 16 23 O -0.56 -15.31 15.46 -3.02 -0.05 -15.35 16 24 C -0.16 -2.70 3.33 -11.55 -0.04 -2.74 16 25 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 26 C -0.12 -1.31 6.53 31.65 0.21 -1.11 16 27 C 0.10 0.79 7.78 86.83 0.68 1.46 16 28 N -0.71 -8.48 6.24 -459.80 -2.87 -11.35 16 29 C 0.53 10.10 7.65 87.90 0.67 10.77 16 30 O -0.56 -15.16 17.85 -3.02 -0.05 -15.21 16 31 C 0.15 6.66 6.69 86.86 0.58 7.24 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.00 0.25 7.51 -2.39 -0.02 0.23 16 34 H 0.02 1.02 7.38 -2.39 -0.02 1.00 16 35 H 0.06 2.45 7.99 -2.39 -0.02 2.43 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.62 7.67 -2.38 -0.02 1.60 16 40 H 0.41 9.47 8.25 -92.71 -0.77 8.71 16 41 H 0.10 1.42 6.91 -2.39 -0.02 1.41 16 42 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.42 3.54 8.96 -92.71 -0.83 2.71 16 46 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.02 0.85 7.80 -2.39 -0.02 0.83 16 Total: -1.00 -83.78 388.35 -2.79 -86.56 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -2.47 Total: 18.67 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.32 Total: 21.79 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -8.56 Total: -145.74 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.10 Total: -30.57 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -83.78 -2.79 -86.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070420247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.511 kcal (2) G-P(sol) polarization free energy of solvation -83.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds