Wall clock time and date at job start Wed Apr 1 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48498 * 109.46829 * 269.99621 * 3 2 1 5 5 H 1.48507 * 109.46949 * 29.99276 * 3 2 1 6 6 H 1.48498 * 109.47419 * 149.99272 * 3 2 1 7 7 C 1.38814 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64704 * 359.93688 * 9 7 2 11 11 C 1.54330 * 107.26866 * 181.10762 * 10 9 7 12 12 C 1.55157 * 102.94049 * 22.19588 * 11 10 9 13 13 H 1.09002 * 111.00633 * 82.57450 * 12 11 10 14 14 C 1.50701 * 111.00134 * 206.38239 * 12 11 10 15 15 N 1.30840 * 125.89515 * 60.02338 * 14 12 11 16 16 N 1.40086 * 108.20105 * 179.97438 * 15 14 12 17 17 H 0.97001 * 126.03627 * 179.97438 * 16 15 14 18 18 C 1.34946 * 107.92556 * 0.02562 * 16 15 14 19 19 C 1.35308 * 107.74855 * 359.74765 * 18 16 15 20 20 C 1.50702 * 126.04203 * 180.27642 * 19 18 16 21 21 N 1.46500 * 109.47006 * 260.14136 * 20 19 18 22 22 C 1.34783 * 120.00168 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99702 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.00258 * 180.02562 * 22 21 20 25 25 H 1.09001 * 110.21738 * 40.69880 * 24 22 21 26 26 C 1.54489 * 110.24376 * 278.77403 * 24 22 21 27 27 C 1.54624 * 101.76004 * 215.58360 * 26 24 22 28 28 C 1.51281 * 104.19884 * 24.79491 * 27 26 24 29 29 O 1.21290 * 124.94116 * 163.76918 * 28 27 26 30 30 N 1.34553 * 110.13868 * 343.67748 * 28 27 26 31 31 C 1.47426 * 125.64918 * 179.97438 * 9 7 2 32 32 H 0.96999 * 119.99911 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88042 * 61.69391 * 10 9 7 34 34 H 1.08996 * 109.88551 * 300.52532 * 10 9 7 35 35 H 1.08996 * 110.71860 * 263.82642 * 11 10 9 36 36 H 1.09002 * 110.71679 * 140.55640 * 11 10 9 37 37 H 1.08004 * 126.12196 * 180.02562 * 18 16 15 38 38 H 1.08993 * 109.47125 * 20.14051 * 20 19 18 39 39 H 1.09005 * 109.47287 * 140.14225 * 20 19 18 40 40 H 0.97004 * 120.00181 * 359.97438 * 21 20 19 41 41 H 1.09000 * 110.96868 * 333.69918 * 26 24 22 42 42 H 1.08995 * 110.96808 * 97.42814 * 26 24 22 43 43 H 1.09000 * 110.48597 * 143.48019 * 27 26 24 44 44 H 1.08998 * 110.48643 * 265.98283 * 27 26 24 45 45 H 0.97001 * 124.43524 * 179.64174 * 30 28 27 46 46 H 1.09004 * 110.36498 * 36.98054 * 31 9 7 47 47 H 1.09000 * 110.45813 * 274.70804 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0013 11 6 -0.4485 -4.0441 0.0295 12 6 0.8521 -4.6556 0.6141 13 1 0.8576 -4.5949 1.7025 14 6 1.0337 -6.0793 0.1546 15 7 1.1434 -6.4765 -1.0872 16 7 1.2978 -7.8688 -1.0893 17 1 1.4011 -8.4304 -1.8734 18 6 1.2763 -8.2910 0.1923 19 6 1.1193 -7.2037 0.9822 20 6 1.0472 -7.2042 2.4875 21 7 -0.3531 -7.1171 2.9092 22 6 -0.6622 -7.1025 4.2210 23 8 0.2190 -7.1610 5.0523 24 6 -2.1026 -7.0136 4.6549 25 1 -2.7271 -7.6403 4.0183 26 6 -2.5871 -5.5476 4.6024 27 6 -3.5394 -5.4866 5.8190 28 6 -3.0422 -6.5834 6.7348 29 8 -3.3293 -6.6920 7.9082 30 7 -2.2366 -7.4221 6.0581 31 6 1.9334 -3.7312 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5547 -2.0852 -0.9008 34 1 -0.5572 -2.0514 0.8846 35 1 -0.6322 -4.4188 -0.9774 36 1 -1.2982 -4.2509 0.6801 37 1 1.3721 -9.3132 0.5276 38 1 1.4858 -8.1249 2.8719 39 1 1.5981 -6.3485 2.8780 40 1 -1.0579 -7.0700 2.2444 41 1 -1.7532 -4.8565 4.7247 42 1 -3.1243 -5.3474 3.6754 43 1 -3.4678 -4.5168 6.3113 44 1 -4.5663 -5.6814 5.5099 45 1 -1.7998 -8.1961 6.4468 46 1 2.8335 -3.7402 0.6153 47 1 2.1668 -4.0437 -1.0173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070432995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:57 Heat of formation + Delta-G solvation = 31.235095 kcal Electronic energy + Delta-G solvation = -30568.838066 eV Core-core repulsion = 26367.805398 eV Total energy + Delta-G solvation = -4201.032668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46763 -40.93806 -39.19325 -37.34254 -36.42763 -35.18488 -33.12986 -31.69125 -31.40709 -30.91461 -29.15914 -28.65527 -27.52294 -25.65447 -24.66503 -22.88964 -22.15663 -20.89845 -20.69343 -20.34804 -20.03589 -18.86726 -18.44870 -17.63006 -17.51648 -16.80846 -16.13449 -15.96848 -15.39923 -14.95434 -14.86727 -14.57204 -14.44568 -14.27239 -13.94958 -13.89691 -13.64552 -13.48135 -13.01858 -12.91964 -12.70632 -12.37834 -12.23584 -12.16541 -11.85600 -11.73958 -11.45589 -10.98246 -10.85495 -10.81139 -10.65124 -10.37738 -10.12771 -10.12481 -9.98757 -9.78632 -9.65090 -9.43722 -9.25437 -9.19749 -8.71487 -8.57032 -6.79907 -5.68919 -3.01626 1.72461 2.28845 2.29271 2.48193 2.77942 2.93004 3.32687 3.42418 3.47639 3.49226 4.01041 4.08520 4.39335 4.49751 4.55861 4.58185 4.63188 4.71157 4.98194 5.05431 5.18273 5.34164 5.39549 5.44903 5.49542 5.53497 5.61695 5.63701 5.75169 5.85161 5.90260 5.98116 6.19136 6.34022 6.42681 6.43858 6.50912 6.64476 6.69371 6.71523 6.94486 7.17354 7.26288 7.58065 7.64343 7.69071 7.84501 7.91284 8.00207 8.28278 9.25030 9.85039 10.50967 11.42908 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.003188 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.357224 B = 8780.573473 C =11351.860697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.129 4.129 12 C -0.032 4.032 13 H 0.091 0.909 14 C 0.122 3.878 15 N -0.281 5.281 16 N -0.480 5.480 17 H 0.439 0.561 18 C 0.077 3.923 19 C -0.264 4.264 20 C 0.202 3.798 21 N -0.716 5.716 22 C 0.504 3.496 23 O -0.530 6.530 24 C 0.114 3.886 25 H 0.105 0.895 26 C -0.123 4.123 27 C -0.155 4.155 28 C 0.524 3.476 29 O -0.533 6.533 30 N -0.710 5.710 31 C 0.148 3.852 32 H 0.251 0.749 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.174 0.826 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.414 0.586 46 H 0.037 0.963 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -20.869 2.448 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.168 4.168 12 C -0.053 4.053 13 H 0.109 0.891 14 C -0.046 4.046 15 N -0.102 5.102 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.073 4.073 19 C -0.276 4.276 20 C 0.078 3.922 21 N -0.368 5.368 22 C 0.288 3.712 23 O -0.406 6.406 24 C 0.004 3.996 25 H 0.123 0.877 26 C -0.161 4.161 27 C -0.195 4.195 28 C 0.310 3.690 29 O -0.409 6.409 30 N -0.367 5.367 31 C 0.021 3.979 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.192 0.808 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.298 -20.276 2.409 21.095 hybrid contribution 0.513 -0.173 -0.008 0.542 sum -4.785 -20.450 2.402 21.139 Atomic orbital electron populations 1.69954 1.04830 1.24940 1.57283 1.24775 0.95724 0.97579 1.02342 0.86131 0.78629 0.83560 0.77529 1.21685 1.21678 1.20706 1.19059 0.90450 0.82378 1.43540 0.90492 1.44455 1.01705 0.99784 1.87139 1.21149 0.84390 0.87981 1.01088 1.22926 0.94862 0.99350 0.99687 1.20948 0.98900 0.85526 0.99941 0.89095 1.22291 0.96283 0.96330 0.89725 1.77518 1.24163 0.87997 1.20553 1.46376 1.58319 1.06903 1.07000 0.71769 1.22366 1.00349 0.99587 0.84977 1.19912 1.19636 0.92318 0.95725 1.19411 0.81719 1.02611 0.88417 1.46141 1.09624 1.74376 1.06646 1.20648 0.90871 0.76828 0.82834 1.90759 1.49252 1.48840 1.51782 1.21603 0.94406 0.98912 0.84669 0.87734 1.22654 1.00381 0.93204 0.99910 1.22371 1.01129 0.99978 0.96028 1.20913 0.77791 0.83105 0.87155 1.90770 1.59848 1.74787 1.15485 1.45966 1.49992 1.30618 1.10082 1.21537 0.93594 0.85563 0.97191 0.93821 0.93903 0.93512 0.92028 0.92289 0.80846 0.90981 0.90259 0.76216 0.88820 0.87695 0.87327 0.87267 0.74597 0.94446 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.28 3.39 -170.06 -0.58 -15.85 16 10 C 0.18 4.19 5.37 -3.06 -0.02 4.17 16 11 C -0.13 -2.25 6.41 -24.89 -0.16 -2.41 16 12 C -0.03 -0.52 3.45 -89.62 -0.31 -0.83 16 13 H 0.09 1.47 7.27 -51.93 -0.38 1.09 16 14 C 0.12 1.68 5.90 -82.40 -0.49 1.19 16 15 N -0.28 -3.97 12.38 33.67 0.42 -3.55 16 16 N -0.48 -4.46 7.36 30.44 0.22 -4.24 16 17 H 0.44 2.62 8.96 -182.61 -1.64 0.98 16 18 C 0.08 0.61 11.90 -17.23 -0.20 0.40 16 19 C -0.26 -2.72 5.47 -105.06 -0.57 -3.30 16 20 C 0.20 1.97 5.69 -5.19 -0.03 1.94 16 21 N -0.72 -5.89 5.55 -61.47 -0.34 -6.23 16 22 C 0.50 4.89 7.02 -10.98 -0.08 4.81 16 23 O -0.53 -7.43 16.56 5.56 0.09 -7.34 16 24 C 0.11 0.80 3.92 -68.16 -0.27 0.54 16 25 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 26 C -0.12 -0.83 6.68 -25.10 -0.17 -0.99 16 27 C -0.15 -1.15 6.86 -26.74 -0.18 -1.33 16 28 C 0.52 5.79 8.43 -10.80 -0.09 5.70 16 29 O -0.53 -8.18 18.03 5.55 0.10 -8.08 16 30 N -0.71 -6.54 5.47 -53.85 -0.29 -6.84 16 31 C 0.15 3.08 6.69 -2.52 -0.02 3.06 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 34 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 35 H 0.06 1.09 7.99 -51.93 -0.41 0.68 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.94 7.67 -51.93 -0.40 0.55 16 40 H 0.40 2.58 8.46 -40.82 -0.35 2.23 16 41 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.41 3.76 8.95 -40.82 -0.37 3.40 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.57 7.80 -51.93 -0.41 0.17 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -37.58 390.56 -9.83 -47.41 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.05 Total: 1.73 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.83 Total: 6.18 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.00 Total: -62.83 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.19 Total: -15.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.58 -9.83 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070432995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.647 kcal (2) G-P(sol) polarization free energy of solvation -37.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds