Wall clock time and date at job start Wed Apr 1 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48498 * 109.46829 * 269.99621 * 3 2 1 5 5 H 1.48507 * 109.46949 * 29.99276 * 3 2 1 6 6 H 1.48498 * 109.47419 * 149.99272 * 3 2 1 7 7 C 1.38814 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64704 * 359.93688 * 9 7 2 11 11 C 1.54330 * 107.26866 * 181.10762 * 10 9 7 12 12 C 1.55157 * 102.94049 * 22.19588 * 11 10 9 13 13 H 1.09002 * 111.00633 * 82.57450 * 12 11 10 14 14 C 1.50701 * 111.00134 * 206.38239 * 12 11 10 15 15 N 1.30840 * 125.89515 * 60.02338 * 14 12 11 16 16 N 1.40086 * 108.20105 * 179.97438 * 15 14 12 17 17 H 0.97001 * 126.03627 * 179.97438 * 16 15 14 18 18 C 1.34946 * 107.92556 * 0.02562 * 16 15 14 19 19 C 1.35308 * 107.74855 * 359.74765 * 18 16 15 20 20 C 1.50702 * 126.04203 * 180.27642 * 19 18 16 21 21 N 1.46500 * 109.47006 * 260.14136 * 20 19 18 22 22 C 1.34783 * 120.00168 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99702 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.00258 * 180.02562 * 22 21 20 25 25 H 1.09001 * 110.21738 * 40.69880 * 24 22 21 26 26 C 1.54489 * 110.24376 * 278.77403 * 24 22 21 27 27 C 1.54624 * 101.76004 * 215.58360 * 26 24 22 28 28 C 1.51281 * 104.19884 * 24.79491 * 27 26 24 29 29 O 1.21290 * 124.94116 * 163.76918 * 28 27 26 30 30 N 1.34553 * 110.13868 * 343.67748 * 28 27 26 31 31 C 1.47426 * 125.64918 * 179.97438 * 9 7 2 32 32 H 0.96999 * 119.99911 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88042 * 61.69391 * 10 9 7 34 34 H 1.08996 * 109.88551 * 300.52532 * 10 9 7 35 35 H 1.08996 * 110.71860 * 263.82642 * 11 10 9 36 36 H 1.09002 * 110.71679 * 140.55640 * 11 10 9 37 37 H 1.08004 * 126.12196 * 180.02562 * 18 16 15 38 38 H 1.08993 * 109.47125 * 20.14051 * 20 19 18 39 39 H 1.09005 * 109.47287 * 140.14225 * 20 19 18 40 40 H 0.97004 * 120.00181 * 359.97438 * 21 20 19 41 41 H 1.09000 * 110.96868 * 333.69918 * 26 24 22 42 42 H 1.08995 * 110.96808 * 97.42814 * 26 24 22 43 43 H 1.09000 * 110.48597 * 143.48019 * 27 26 24 44 44 H 1.08998 * 110.48643 * 265.98283 * 27 26 24 45 45 H 0.97001 * 124.43524 * 179.64174 * 30 28 27 46 46 H 1.09004 * 110.36498 * 36.98054 * 31 9 7 47 47 H 1.09000 * 110.45813 * 274.70804 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0013 11 6 -0.4485 -4.0441 0.0295 12 6 0.8521 -4.6556 0.6141 13 1 0.8576 -4.5949 1.7025 14 6 1.0337 -6.0793 0.1546 15 7 1.1434 -6.4765 -1.0872 16 7 1.2978 -7.8688 -1.0893 17 1 1.4011 -8.4304 -1.8734 18 6 1.2763 -8.2910 0.1923 19 6 1.1193 -7.2037 0.9822 20 6 1.0472 -7.2042 2.4875 21 7 -0.3531 -7.1171 2.9092 22 6 -0.6622 -7.1025 4.2210 23 8 0.2190 -7.1610 5.0523 24 6 -2.1026 -7.0136 4.6549 25 1 -2.7271 -7.6403 4.0183 26 6 -2.5871 -5.5476 4.6024 27 6 -3.5394 -5.4866 5.8190 28 6 -3.0422 -6.5834 6.7348 29 8 -3.3293 -6.6920 7.9082 30 7 -2.2366 -7.4221 6.0581 31 6 1.9334 -3.7312 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5547 -2.0852 -0.9008 34 1 -0.5572 -2.0514 0.8846 35 1 -0.6322 -4.4188 -0.9774 36 1 -1.2982 -4.2509 0.6801 37 1 1.3721 -9.3132 0.5276 38 1 1.4858 -8.1249 2.8719 39 1 1.5981 -6.3485 2.8780 40 1 -1.0579 -7.0700 2.2444 41 1 -1.7532 -4.8565 4.7247 42 1 -3.1243 -5.3474 3.6754 43 1 -3.4678 -4.5168 6.3113 44 1 -4.5663 -5.6814 5.5099 45 1 -1.7998 -8.1961 6.4468 46 1 2.8335 -3.7402 0.6153 47 1 2.1668 -4.0437 -1.0173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070432995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:56 Heat of formation + Delta-G solvation = 0.484323 kcal Electronic energy + Delta-G solvation = -30570.171520 eV Core-core repulsion = 26367.805398 eV Total energy + Delta-G solvation = -4202.366122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32053 -41.68562 -40.02925 -38.99232 -37.26208 -36.00447 -34.85216 -32.80034 -32.27538 -31.80495 -30.86259 -29.38214 -29.07295 -26.61038 -26.36511 -23.53715 -23.41427 -21.91147 -21.63596 -21.44516 -21.19368 -20.07298 -19.21495 -18.78150 -18.38775 -18.18971 -16.92145 -16.77929 -16.73753 -16.33388 -16.05746 -15.73841 -15.67720 -15.31623 -14.97743 -14.70985 -14.65026 -14.16894 -14.05322 -13.96481 -13.82312 -13.63553 -13.52348 -13.51753 -13.16446 -12.84102 -12.79546 -12.69771 -12.25315 -12.06042 -12.00670 -11.88484 -11.70958 -11.58985 -11.22627 -11.17419 -10.98895 -10.67439 -10.23453 -10.19364 -9.99932 -9.49976 -8.85829 -7.82268 -5.17126 1.00603 1.44262 1.47401 1.48773 1.55826 1.57419 1.59986 2.06578 2.20591 2.51644 2.62828 3.35605 3.37011 3.49152 3.57238 3.78084 3.82415 3.93007 4.06351 4.08409 4.14458 4.19682 4.21986 4.38457 4.53543 4.59981 4.71866 4.76179 4.83388 4.87198 4.91328 5.03169 5.07755 5.09399 5.10365 5.19749 5.40708 5.47408 5.48323 5.62713 5.72338 5.73456 5.82425 5.95081 6.23559 6.55000 6.60713 6.81709 7.14412 7.15754 7.27498 7.80591 8.45056 9.27756 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.003188 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.357224 B = 8780.573473 C =11351.860697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.186 3.814 11 C -0.110 4.110 12 C -0.010 4.010 13 H 0.094 0.906 14 C 0.107 3.893 15 N -0.324 5.324 16 N -0.466 5.466 17 H 0.454 0.546 18 C 0.108 3.892 19 C -0.271 4.271 20 C 0.207 3.793 21 N -0.701 5.701 22 C 0.504 3.496 23 O -0.580 6.580 24 C 0.118 3.882 25 H 0.151 0.849 26 C -0.120 4.120 27 C -0.148 4.148 28 C 0.513 3.487 29 O -0.588 6.588 30 N -0.709 5.709 31 C 0.144 3.856 32 H 0.247 0.753 33 H 0.003 0.997 34 H 0.019 0.981 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.416 0.584 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.412 0.588 46 H 0.034 0.966 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -23.436 1.462 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.061 3.939 11 C -0.149 4.149 12 C -0.032 4.032 13 H 0.112 0.888 14 C -0.060 4.060 15 N -0.147 5.147 16 N -0.173 5.173 17 H 0.301 0.699 18 C -0.042 4.042 19 C -0.283 4.283 20 C 0.083 3.917 21 N -0.353 5.353 22 C 0.290 3.710 23 O -0.460 6.460 24 C 0.009 3.991 25 H 0.168 0.832 26 C -0.158 4.158 27 C -0.187 4.187 28 C 0.301 3.699 29 O -0.468 6.468 30 N -0.363 5.363 31 C 0.018 3.982 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.240 0.760 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.156 0.844 45 H 0.251 0.749 46 H 0.052 0.948 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.794 -22.876 1.340 23.637 hybrid contribution 0.766 0.531 0.199 0.953 sum -5.028 -22.345 1.540 22.956 Atomic orbital electron populations 1.70164 1.06044 1.25215 1.58127 1.25581 0.96662 1.00706 1.02567 0.85129 0.77718 0.79398 0.77393 1.21455 1.21760 1.19620 1.19415 0.90872 0.83885 1.43194 0.90534 1.44770 1.02765 1.00791 1.86960 1.20936 0.83353 0.91873 0.97774 1.22728 0.96774 0.94605 1.00756 1.20596 0.96116 0.86812 0.99636 0.88792 1.21832 0.98131 0.95403 0.90650 1.77422 1.25510 0.90823 1.20993 1.46356 1.57087 1.05423 1.08480 0.69902 1.23016 0.96705 1.00935 0.83538 1.19864 1.20816 0.91867 0.95730 1.19271 0.82211 1.02107 0.88105 1.46013 1.09547 1.73258 1.06494 1.21081 0.91499 0.75730 0.82703 1.90747 1.50874 1.51245 1.53099 1.21874 0.93258 1.00059 0.83871 0.83180 1.22727 0.99691 0.92301 1.01040 1.22411 1.02721 0.98294 0.95317 1.21582 0.77597 0.83870 0.86854 1.90732 1.61992 1.76216 1.17874 1.46094 1.48987 1.30076 1.11118 1.21633 0.94961 0.84687 0.96902 0.94348 0.97912 0.96302 0.92068 0.88602 0.75964 0.89636 0.93008 0.74669 0.91088 0.84263 0.87695 0.84360 0.74863 0.94801 0.96555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.57 10.31 21.65 0.22 -56.35 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.99 10.28 84.03 0.86 -13.13 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.63 -32.66 3.39 -691.95 -2.35 -35.01 16 10 C 0.19 8.97 5.37 86.73 0.47 9.43 16 11 C -0.11 -3.73 6.41 31.78 0.20 -3.53 16 12 C -0.01 -0.33 3.45 -10.14 -0.03 -0.37 16 13 H 0.09 2.95 7.27 -2.39 -0.02 2.93 16 14 C 0.11 2.72 5.90 43.10 0.25 2.98 16 15 N -0.32 -8.46 12.38 -47.38 -0.59 -9.05 16 16 N -0.47 -6.87 7.36 -57.59 -0.42 -7.30 16 17 H 0.45 3.63 8.96 -213.33 -1.91 1.72 16 18 C 0.11 1.17 11.90 83.54 0.99 2.17 16 19 C -0.27 -4.68 5.47 -20.15 -0.11 -4.79 16 20 C 0.21 3.50 5.69 85.63 0.49 3.99 16 21 N -0.70 -9.37 5.55 -466.79 -2.59 -11.96 16 22 C 0.50 8.72 7.02 87.65 0.62 9.33 16 23 O -0.58 -15.91 16.56 -3.02 -0.05 -15.96 16 24 C 0.12 1.32 3.92 44.70 0.18 1.50 16 25 H 0.15 0.42 8.14 -2.39 -0.02 0.41 16 26 C -0.12 -1.28 6.68 31.65 0.21 -1.06 16 27 C -0.15 -1.91 6.86 30.59 0.21 -1.70 16 28 C 0.51 11.10 8.43 87.88 0.74 11.84 16 29 O -0.59 -18.58 18.03 -3.06 -0.06 -18.63 16 30 N -0.71 -12.23 5.47 -442.79 -2.42 -14.66 16 31 C 0.14 6.09 6.69 86.86 0.58 6.67 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.00 0.15 7.51 -2.39 -0.02 0.13 16 34 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 35 H 0.06 2.11 7.99 -2.39 -0.02 2.09 16 36 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.22 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.19 7.67 -2.38 -0.02 1.17 16 40 H 0.42 3.52 8.46 -92.71 -0.78 2.74 16 41 H 0.07 1.12 7.91 -2.39 -0.02 1.10 16 42 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.41 7.30 8.95 -92.71 -0.83 6.47 16 46 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.02 0.73 7.80 -2.39 -0.02 0.72 16 Total: -1.00 -88.60 390.56 -2.59 -91.19 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -2.49 Total: 9.25 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.12 Total: 20.25 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -8.15 Total: -134.32 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.11 Total: -34.60 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -88.60 -2.59 -91.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070432995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.675 kcal (2) G-P(sol) polarization free energy of solvation -88.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds