Wall clock time and date at job start Wed Apr 1 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48495 * 109.47317 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47082 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46979 * 119.99888 * 3 2 1 7 7 C 1.38806 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99927 * 190.49986 * 7 2 1 9 9 N 1.36940 * 120.00346 * 10.49944 * 7 2 1 10 10 C 1.47162 * 120.97751 * 31.59169 * 9 7 2 11 11 C 1.53295 * 108.38054 * 129.47760 * 10 9 7 12 12 O 1.42965 * 109.22364 * 52.30416 * 11 10 9 13 13 C 1.42958 * 114.16422 * 297.41359 * 12 11 10 14 14 C 1.47160 * 120.94606 * 211.56983 * 9 7 2 15 15 H 1.09005 * 109.64626 * 110.77873 * 14 9 7 16 16 C 1.50698 * 109.73085 * 350.21738 * 14 9 7 17 17 N 1.30714 * 125.52666 * 316.08719 * 16 14 9 18 18 N 1.40444 * 106.79274 * 179.97438 * 17 16 14 19 19 H 0.97003 * 126.82039 * 180.02562 * 18 17 16 20 20 C 1.34424 * 106.35297 * 359.97438 * 18 17 16 21 21 C 1.50708 * 125.95727 * 179.97438 * 20 18 17 22 22 N 1.46502 * 109.46811 * 95.02899 * 21 20 18 23 23 C 1.34775 * 119.99534 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00446 * 359.97438 * 23 22 21 25 25 C 1.47104 * 119.99712 * 179.97438 * 23 22 21 26 26 C 1.32615 * 124.61867 * 180.02562 * 25 23 22 27 27 C 1.51116 * 110.75576 * 180.02562 * 26 25 23 28 28 C 1.54569 * 104.84162 * 16.59576 * 27 26 25 29 29 C 1.51114 * 124.62075 * 359.72456 * 25 23 22 30 30 N 1.30834 * 108.07962 * 359.75311 * 20 18 17 31 31 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.68004 * 9.75515 * 10 9 7 33 33 H 1.08995 * 109.70908 * 249.21699 * 10 9 7 34 34 H 1.08995 * 109.51540 * 292.37320 * 11 10 9 35 35 H 1.09003 * 109.50913 * 172.22650 * 11 10 9 36 36 H 1.09004 * 109.51457 * 182.50687 * 13 12 11 37 37 H 1.09000 * 109.51487 * 302.61035 * 13 12 11 38 38 H 1.09002 * 109.46773 * 215.02390 * 21 20 18 39 39 H 1.08996 * 109.46961 * 335.02658 * 21 20 18 40 40 H 0.96998 * 120.00133 * 359.97438 * 22 21 20 41 41 H 1.07996 * 124.62447 * 0.02562 * 26 25 23 42 42 H 1.08998 * 110.36376 * 135.44089 * 27 26 25 43 43 H 1.08997 * 110.36402 * 257.64551 * 27 26 25 44 44 H 1.09002 * 110.98478 * 93.07283 * 28 27 26 45 45 H 1.09003 * 110.98405 * 216.83479 * 28 27 26 46 46 H 1.09003 * 110.36515 * 282.23998 * 29 25 23 47 47 H 1.08997 * 110.36466 * 44.55928 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0766 -1.2100 0.1699 9 7 1.3428 -2.3780 -0.2172 10 6 0.1549 -2.4261 -1.0846 11 6 0.3432 -3.5591 -2.0998 12 8 0.6708 -4.7646 -1.4045 13 6 1.9003 -4.7051 -0.6775 14 6 1.7931 -3.6305 0.4105 15 1 1.0709 -3.9428 1.1649 16 6 3.1405 -3.4221 1.0525 17 7 4.1467 -2.7828 0.5161 18 7 5.1970 -2.8249 1.4475 19 1 6.0807 -2.4383 1.3450 20 6 4.7339 -3.5063 2.5097 21 6 5.5033 -3.8119 3.7690 22 7 5.2087 -2.7939 4.7805 23 6 5.7878 -2.8638 5.9955 24 8 6.5545 -3.7720 6.2523 25 6 5.4924 -1.8413 7.0109 26 6 6.0094 -1.8206 8.2319 27 6 5.4926 -0.6342 9.0124 28 6 4.2483 -0.1569 8.2294 29 6 4.5633 -0.6678 6.8027 30 7 3.4972 -3.8537 2.2615 31 1 -0.4850 0.8400 0.0004 32 1 0.0451 -1.4772 -1.6095 33 1 -0.7329 -2.6171 -0.4818 34 1 1.1510 -3.3032 -2.7854 35 1 -0.5801 -3.7021 -2.6612 36 1 2.0973 -5.6726 -0.2156 37 1 2.7140 -4.4542 -1.3580 38 1 5.2108 -4.7925 4.1445 39 1 6.5714 -3.8098 3.5517 40 1 4.5968 -2.0696 4.5758 41 1 6.7051 -2.5518 8.6162 42 1 5.2128 -0.9368 10.0215 43 1 6.2453 0.1532 9.0483 44 1 3.3406 -0.6158 8.6215 45 1 4.1713 0.9303 8.2440 46 1 5.0578 0.1086 6.2188 47 1 3.6483 -0.9917 6.3069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070583078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:28 Heat of formation + Delta-G solvation = 35.352357 kcal Electronic energy + Delta-G solvation = -30624.568710 eV Core-core repulsion = 26423.714579 eV Total energy + Delta-G solvation = -4200.854130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.31869 -41.06199 -39.99731 -38.73287 -36.62748 -36.11409 -34.40945 -33.15683 -32.60987 -31.56816 -30.42749 -29.43025 -28.82123 -27.78498 -25.48131 -25.25164 -23.42054 -22.80197 -21.88564 -21.61182 -21.07146 -20.15664 -19.12068 -18.49474 -18.14556 -17.66590 -17.22287 -16.85269 -16.67805 -16.28135 -16.18949 -16.02279 -15.95701 -15.68514 -15.40364 -15.06302 -14.58780 -14.55971 -14.20605 -13.84606 -13.63375 -13.43645 -13.20238 -13.01474 -12.96673 -12.83319 -12.71820 -12.61724 -12.30420 -12.17826 -12.11196 -12.03690 -11.91572 -11.48059 -11.25580 -11.16868 -11.08017 -10.92617 -10.56097 -10.39319 -10.27698 -9.88853 -8.66544 -7.87100 -5.38793 0.33095 0.41052 1.38430 1.42309 1.48328 1.54027 1.63991 2.17973 2.30347 2.45787 2.68657 2.98211 3.29838 3.39885 3.47694 3.60008 3.62734 3.79070 4.03575 4.11860 4.16825 4.21212 4.29345 4.34813 4.45463 4.47286 4.60208 4.61645 4.73824 4.77571 4.86414 4.87695 4.94751 4.95444 5.08840 5.14571 5.18047 5.21099 5.25147 5.30681 5.36085 5.53394 5.58577 5.79776 6.12150 6.23135 6.30345 6.38364 7.01429 7.02284 7.13195 7.73843 8.30379 9.19610 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.003083 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.494634 B = 9080.423134 C =10655.080294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.092 0.908 9 N -0.601 5.601 10 C 0.152 3.848 11 C 0.045 3.955 12 O -0.391 6.391 13 C 0.071 3.929 14 C 0.221 3.779 15 H 0.046 0.954 16 C 0.241 3.759 17 N -0.288 5.288 18 N -0.465 5.465 19 H 0.454 0.546 20 C 0.264 3.736 21 C 0.212 3.788 22 N -0.716 5.716 23 C 0.572 3.428 24 O -0.575 6.575 25 C -0.219 4.219 26 C -0.056 4.056 27 C -0.104 4.104 28 C -0.122 4.122 29 C -0.095 4.095 30 N -0.540 5.540 31 H 0.249 0.751 32 H 0.070 0.930 33 H 0.008 0.992 34 H 0.047 0.953 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.409 0.591 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.605 -2.819 12.523 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.109 0.891 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.032 4.032 12 O -0.309 6.309 13 C -0.008 4.008 14 C 0.112 3.888 15 H 0.063 0.937 16 C -0.042 4.042 17 N -0.117 5.117 18 N -0.186 5.186 19 H 0.303 0.697 20 C -0.015 4.015 21 C 0.087 3.913 22 N -0.369 5.369 23 C 0.363 3.637 24 O -0.456 6.456 25 C -0.222 4.222 26 C -0.076 4.076 27 C -0.140 4.140 28 C -0.160 4.160 29 C -0.132 4.132 30 N -0.270 5.270 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.245 0.755 41 H 0.157 0.843 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.632 -3.357 12.164 17.855 hybrid contribution 0.431 1.807 -0.242 1.873 sum 13.063 -1.550 11.922 17.753 Atomic orbital electron populations 1.70131 1.06392 1.25680 1.55997 1.25876 0.96073 1.01076 1.01180 0.85448 0.77623 0.79891 0.78061 1.20513 1.21872 1.20654 1.19991 0.92335 0.83881 1.42574 0.89128 1.44191 1.32204 1.03373 1.52979 1.21291 0.87501 0.97376 0.91134 1.23283 1.01018 0.84933 0.93980 1.87820 1.40680 1.36079 1.66327 1.22861 0.86502 0.98712 0.92761 1.19546 0.86541 0.89335 0.93366 0.93667 1.23767 0.95957 0.94594 0.89862 1.78217 0.96757 1.22035 1.14684 1.48101 1.15048 1.42794 1.12640 0.69726 1.24322 0.90897 0.93620 0.92663 1.19693 0.98434 0.93536 0.79675 1.45829 1.48448 1.29637 1.12950 1.18243 0.79128 0.84806 0.81539 1.90775 1.37823 1.36742 1.80285 1.21784 1.05818 0.98732 0.95890 1.24369 0.93699 0.96289 0.93251 1.21555 0.97601 0.95246 0.99606 1.22492 0.98228 1.02072 0.93176 1.21332 0.97631 0.94726 0.99544 1.70261 1.12162 1.28291 1.16281 0.94193 0.91202 0.97416 0.93490 0.86874 0.87035 0.93325 0.87471 0.86289 0.75511 0.84287 0.88441 0.87977 0.90656 0.89202 0.89897 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.15 21.65 0.24 -54.49 16 2 C -0.05 -2.60 5.06 84.86 0.43 -2.17 16 3 Si 0.96 44.81 29.57 68.60 2.03 46.84 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.26 -14.02 8.76 84.03 0.74 -13.28 16 8 H 0.09 4.84 4.90 -2.91 -0.01 4.82 16 9 N -0.60 -30.57 3.03 -677.84 -2.06 -32.63 16 10 C 0.15 7.39 5.38 86.35 0.46 7.86 16 11 C 0.05 1.77 6.98 72.08 0.50 2.27 16 12 O -0.39 -15.31 10.74 -148.98 -1.60 -16.91 16 13 C 0.07 2.67 6.27 72.08 0.45 3.13 16 14 C 0.22 9.78 3.62 44.22 0.16 9.94 16 15 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 16 C 0.24 9.85 6.15 138.63 0.85 10.70 16 17 N -0.29 -11.17 10.00 -51.34 -0.51 -11.68 16 18 N -0.46 -12.91 7.45 -50.70 -0.38 -13.29 16 19 H 0.45 8.77 8.96 -213.09 -1.91 6.86 16 20 C 0.26 7.32 7.61 138.23 1.05 8.37 16 21 C 0.21 4.43 6.30 85.64 0.54 4.97 16 22 N -0.72 -15.71 5.54 -470.44 -2.61 -18.31 16 23 C 0.57 13.62 7.79 86.57 0.67 14.29 16 24 O -0.57 -16.78 16.77 -4.05 -0.07 -16.84 16 25 C -0.22 -4.27 6.09 -18.56 -0.11 -4.38 16 26 C -0.06 -0.90 10.43 24.66 0.26 -0.64 16 27 C -0.10 -1.09 6.80 30.51 0.21 -0.88 16 28 C -0.12 -1.54 7.17 31.73 0.23 -1.31 16 29 C -0.10 -1.60 6.04 30.59 0.18 -1.41 16 30 N -0.54 -19.58 11.19 -179.72 -2.01 -21.60 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.07 3.72 6.35 -2.39 -0.02 3.71 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 37 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.41 9.13 7.46 -92.71 -0.69 8.44 16 41 H 0.14 2.16 8.03 -2.91 -0.02 2.14 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.07 1.23 7.82 -2.39 -0.02 1.21 16 Total: -1.00 -73.70 384.88 -1.91 -75.61 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.58 Total: 25.86 kcal Atomic # 6 Polarization: 30.83 SS G_CDS: 6.63 Total: 37.45 kcal Atomic # 7 Polarization: -144.68 SS G_CDS: -7.32 Total: -152.00 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.67 Total: -33.75 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.70 -1.91 -75.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070583078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.960 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds