Wall clock time and date at job start Wed Apr 1 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00357 * 2 1 4 4 H 1.48505 * 109.46930 * 274.98565 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.98178 * 3 2 1 6 6 H 1.48499 * 109.47305 * 154.98595 * 3 2 1 7 7 C 1.38813 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00417 * 187.05815 * 7 2 1 9 9 N 1.36940 * 120.00047 * 7.05655 * 7 2 1 10 10 C 1.47137 * 125.58538 * 354.73825 * 9 7 2 11 11 C 1.54604 * 107.36377 * 179.10936 * 10 9 7 12 12 C 1.53656 * 102.90158 * 339.15361 * 11 10 9 13 13 C 1.52380 * 116.38875 * 264.60690 * 12 11 10 14 14 N 1.47887 * 85.58590 * 218.64064 * 13 12 11 15 15 C 1.34783 * 134.33889 * 203.44968 * 14 13 12 16 16 O 1.21278 * 120.00168 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99732 * 0.04632 * 15 14 13 18 18 H 1.09000 * 109.44052 * 300.06200 * 17 15 14 19 19 C 1.53118 * 109.43902 * 180.16782 * 17 15 14 20 20 C 1.53477 * 109.37677 * 170.19118 * 19 17 15 21 21 C 1.50809 * 108.08394 * 48.87276 * 20 19 17 22 22 N 1.29601 * 128.73561 * 164.05269 * 21 20 19 23 23 N 1.28865 * 109.79585 * 180.19274 * 22 21 20 24 24 C 1.31376 * 109.92931 * 359.96533 * 23 22 21 25 25 O 1.35536 * 126.57869 * 179.97438 * 24 23 22 26 26 N 1.35424 * 106.84303 * 359.94617 * 24 23 22 27 27 C 1.46216 * 129.14157 * 180.18319 * 26 24 23 28 28 C 1.47887 * 91.31925 * 23.48166 * 14 13 12 29 29 C 1.47724 * 125.58693 * 174.77646 * 9 7 2 30 30 H 0.96996 * 119.99537 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.86717 * 59.66558 * 10 9 7 32 32 H 1.08997 * 109.97743 * 298.61488 * 10 9 7 33 33 H 1.09001 * 110.75630 * 97.55161 * 11 10 9 34 34 H 1.08998 * 110.76214 * 220.74753 * 11 10 9 35 35 H 1.09000 * 113.84615 * 332.80441 * 13 12 11 36 36 H 1.08994 * 113.85321 * 104.47424 * 13 12 11 37 37 H 1.09003 * 109.49092 * 290.15988 * 19 17 15 38 38 H 1.08998 * 109.49372 * 50.22160 * 19 17 15 39 39 H 1.09002 * 109.74172 * 289.23024 * 20 19 17 40 40 H 1.08999 * 109.74292 * 168.51297 * 20 19 17 41 41 H 0.96694 * 114.00435 * 269.99865 * 25 24 23 42 42 H 1.08992 * 109.60556 * 43.19384 * 27 26 24 43 43 H 1.08993 * 109.73729 * 282.78348 * 27 26 24 44 44 H 1.09003 * 113.85518 * 222.35081 * 28 14 13 45 45 H 1.09001 * 113.97055 * 90.69858 * 28 14 13 46 46 H 1.08996 * 110.40303 * 321.22176 * 29 9 7 47 47 H 1.09002 * 110.39751 * 83.51232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2058 0.1155 9 7 1.3333 -2.3837 -0.1446 10 6 -0.1297 -2.5311 -0.1999 11 6 -0.4350 -4.0343 -0.3927 12 6 0.8824 -4.5815 -0.9638 13 6 0.9700 -4.6888 -2.4813 14 7 1.6953 -5.9540 -2.2356 15 6 2.5740 -6.6892 -2.9455 16 8 3.0201 -7.7167 -2.4807 17 6 3.0026 -6.2341 -4.3168 18 1 2.1295 -6.1660 -4.9658 19 6 3.9942 -7.2435 -4.9019 20 6 4.2411 -6.9161 -6.3809 21 6 4.5428 -5.4425 -6.4901 22 7 5.0767 -4.7951 -7.4778 23 7 5.1705 -3.5448 -7.1802 24 6 4.6942 -3.3346 -5.9740 25 8 4.6292 -2.1454 -5.3272 26 7 4.2800 -4.5341 -5.5012 27 6 3.6697 -4.8574 -4.2124 28 6 1.0722 -6.0920 -0.9015 29 6 1.9521 -3.7191 -0.2705 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5279 -1.9615 -1.0397 32 1 -0.5749 -2.1790 0.7306 33 1 -0.6680 -4.5067 0.5616 34 1 -1.2512 -4.1751 -1.1013 35 1 0.0048 -4.8218 -2.9700 36 1 1.5806 -3.9133 -2.9435 37 1 4.9355 -7.1874 -4.3551 38 1 3.5829 -8.2492 -4.8159 39 1 3.3514 -7.1538 -6.9641 40 1 5.0889 -7.4937 -6.7493 41 1 5.4125 -1.9421 -4.7979 42 1 2.9206 -4.1059 -3.9637 43 1 4.4361 -4.8802 -3.4377 44 1 1.7630 -6.4178 -0.1239 45 1 0.1383 -6.6542 -0.9050 46 1 2.8516 -3.6648 -0.8837 47 1 2.1881 -4.1228 0.7141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072867511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:55 Heat of formation + Delta-G solvation = 79.893800 kcal Electronic energy + Delta-G solvation = -31753.906719 eV Core-core repulsion = 27554.984051 eV Total energy + Delta-G solvation = -4198.922668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.44019 -40.92151 -39.02803 -37.84711 -36.93682 -35.77627 -33.57617 -32.45674 -31.53650 -29.81989 -29.05746 -28.34983 -26.43317 -26.08438 -25.22195 -23.97576 -23.07785 -22.50753 -20.61696 -20.30525 -19.43810 -19.00878 -18.45577 -17.46412 -17.16505 -16.81386 -16.66172 -16.02540 -15.47286 -15.17497 -14.92628 -14.81323 -14.69149 -14.53381 -14.50894 -13.88405 -13.41582 -13.35148 -12.78268 -12.71314 -12.65378 -12.36636 -12.15297 -12.03857 -11.97124 -11.89854 -11.60531 -11.43846 -11.22000 -11.03380 -10.88338 -10.58769 -10.47420 -10.40807 -10.34033 -10.17924 -10.03725 -9.80140 -9.72128 -9.21102 -8.80860 -8.68815 -6.97167 -5.84629 -3.17752 1.37922 1.82811 2.35383 2.50021 2.60423 3.32705 3.38149 3.40450 3.51323 3.81925 3.90216 4.04666 4.12079 4.35491 4.48055 4.56605 4.60651 4.73320 4.83687 4.86930 4.99379 5.06639 5.13252 5.29893 5.33907 5.37902 5.46435 5.51759 5.54734 5.56357 5.58559 5.61871 5.68319 5.69201 5.76939 5.96831 6.06985 6.27235 6.30622 6.34260 6.47612 6.54504 7.14892 7.42146 7.47577 7.53303 7.70128 7.89788 8.12249 8.44192 9.08983 9.69083 10.33972 11.27184 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.003882 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.938025 B = 7210.302079 C = 9551.884260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.177 3.823 11 C -0.131 4.131 12 C -0.105 4.105 13 C 0.115 3.885 14 N -0.638 5.638 15 C 0.544 3.456 16 O -0.537 6.537 17 C -0.117 4.117 18 H 0.109 0.891 19 C -0.107 4.107 20 C -0.031 4.031 21 C 0.186 3.814 22 N -0.276 5.276 23 N -0.290 5.290 24 C 0.359 3.641 25 O -0.431 6.431 26 N -0.480 5.480 27 C 0.111 3.889 28 C 0.124 3.876 29 C 0.164 3.836 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.409 0.591 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.037 0.963 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -14.419 -7.591 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.170 4.170 12 C -0.106 4.106 13 C -0.007 4.007 14 N -0.373 5.373 15 C 0.331 3.669 16 O -0.414 6.414 17 C -0.139 4.139 18 H 0.127 0.873 19 C -0.145 4.145 20 C -0.071 4.071 21 C -0.081 4.081 22 N -0.117 5.117 23 N -0.141 5.141 24 C 0.055 3.945 25 O -0.231 6.231 26 N -0.183 5.183 27 C -0.012 4.012 28 C 0.002 3.998 29 C 0.038 3.962 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.267 0.733 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.768 -14.321 -8.927 17.290 hybrid contribution 0.101 1.027 1.656 1.951 sum 3.869 -13.294 -7.270 15.638 Atomic orbital electron populations 1.69959 1.04924 1.25216 1.56335 1.24795 0.95666 0.97643 1.01794 0.86162 0.78731 0.83625 0.77623 1.21466 1.21687 1.20642 1.18998 0.91060 0.82406 1.43692 0.90525 1.44545 1.01585 1.00668 1.86275 1.21226 0.84357 0.88083 1.01096 1.22677 0.94396 1.00003 0.99945 1.22553 1.00014 0.93624 0.94437 1.23241 0.96113 0.83804 0.97505 1.50312 1.42263 1.25238 1.19488 1.19683 0.78957 0.82967 0.85257 1.90719 1.56233 1.24087 1.70342 1.21634 1.00939 0.94931 0.96352 0.87250 1.21577 0.99524 0.99647 0.93766 1.20311 1.04357 0.84850 0.97560 1.24648 1.02035 0.95001 0.86407 1.74000 1.17341 0.98020 1.22387 1.74867 1.20328 1.09151 1.09760 1.21912 1.00690 0.80998 0.90926 1.84970 1.45542 1.27506 1.65049 1.46631 1.47548 1.08122 1.16043 1.22064 0.99216 0.97490 0.82468 1.23028 0.97115 0.95997 0.83700 1.21102 0.92858 0.86143 0.96133 0.93638 0.93269 0.93926 0.91595 0.91702 0.89238 0.89523 0.90185 0.88317 0.88287 0.87331 0.73278 0.87159 0.88504 0.89795 0.89482 0.94524 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.36 10.35 55.49 0.57 -24.79 16 2 C 0.00 -0.06 5.48 -17.43 -0.10 -0.15 16 3 Si 0.91 21.05 29.56 -169.99 -5.02 16.02 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.23 -6.02 10.26 -15.06 -0.15 -6.17 16 8 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 9 N -0.60 -13.78 3.41 -170.19 -0.58 -14.36 16 10 C 0.18 3.80 5.40 -2.85 -0.02 3.78 16 11 C -0.13 -1.99 6.34 -25.55 -0.16 -2.15 16 12 C -0.10 -1.45 1.00 -154.59 -0.15 -1.61 16 13 C 0.12 1.37 7.54 -3.60 -0.03 1.34 16 14 N -0.64 -7.50 3.58 -186.90 -0.67 -8.17 16 15 C 0.54 6.47 7.36 -10.98 -0.08 6.38 16 16 O -0.54 -8.01 16.54 5.56 0.09 -7.92 16 17 C -0.12 -1.07 2.36 -91.53 -0.22 -1.29 16 18 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 19 C -0.11 -0.85 4.68 -26.42 -0.12 -0.97 16 20 C -0.03 -0.23 6.34 -27.58 -0.17 -0.41 16 21 C 0.19 2.14 7.78 -154.45 -1.20 0.94 16 22 N -0.28 -4.00 12.17 32.93 0.40 -3.60 16 23 N -0.29 -4.51 12.24 29.53 0.36 -4.15 16 24 C 0.36 4.84 9.30 -89.29 -0.83 4.01 16 25 O -0.43 -5.19 13.64 -18.30 -0.25 -5.44 16 26 N -0.48 -5.56 3.16 -115.37 -0.36 -5.92 16 27 C 0.11 1.10 6.07 -4.02 -0.02 1.08 16 28 C 0.12 1.45 8.22 -3.61 -0.03 1.42 16 29 C 0.16 2.92 6.67 -2.90 -0.02 2.90 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 1.18 7.30 -51.93 -0.38 0.80 16 32 H 0.04 1.04 7.60 -51.93 -0.39 0.65 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 35 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 36 H 0.09 1.10 5.73 -51.93 -0.30 0.80 16 37 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.10 0.75 7.78 -51.93 -0.40 0.35 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.41 2.86 9.06 45.56 0.41 3.27 16 42 H 0.11 1.18 5.42 -51.93 -0.28 0.89 16 43 H 0.10 0.95 8.12 -51.93 -0.42 0.52 16 44 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -33.98 377.11 -9.03 -43.00 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.94 Total: 0.53 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -3.31 Total: 9.11 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.28 Total: -60.99 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.16 Total: -13.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.98 -9.03 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072867511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.899 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds