Wall clock time and date at job start Wed Apr 1 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00357 * 2 1 4 4 H 1.48505 * 109.46930 * 274.98565 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.98178 * 3 2 1 6 6 H 1.48499 * 109.47305 * 154.98595 * 3 2 1 7 7 C 1.38813 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00417 * 187.05815 * 7 2 1 9 9 N 1.36940 * 120.00047 * 7.05655 * 7 2 1 10 10 C 1.47137 * 125.58538 * 354.73825 * 9 7 2 11 11 C 1.54604 * 107.36377 * 179.10936 * 10 9 7 12 12 C 1.53656 * 102.90158 * 339.15361 * 11 10 9 13 13 C 1.52380 * 116.38875 * 264.60690 * 12 11 10 14 14 N 1.47887 * 85.58590 * 218.64064 * 13 12 11 15 15 C 1.34783 * 134.33889 * 203.44968 * 14 13 12 16 16 O 1.21278 * 120.00168 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99732 * 0.04632 * 15 14 13 18 18 H 1.09000 * 109.44052 * 300.06200 * 17 15 14 19 19 C 1.53118 * 109.43902 * 180.16782 * 17 15 14 20 20 C 1.53477 * 109.37677 * 170.19118 * 19 17 15 21 21 C 1.50809 * 108.08394 * 48.87276 * 20 19 17 22 22 N 1.29601 * 128.73561 * 164.05269 * 21 20 19 23 23 N 1.28865 * 109.79585 * 180.19274 * 22 21 20 24 24 C 1.31376 * 109.92931 * 359.96533 * 23 22 21 25 25 O 1.35536 * 126.57869 * 179.97438 * 24 23 22 26 26 N 1.35424 * 106.84303 * 359.94617 * 24 23 22 27 27 C 1.46216 * 129.14157 * 180.18319 * 26 24 23 28 28 C 1.47887 * 91.31925 * 23.48166 * 14 13 12 29 29 C 1.47724 * 125.58693 * 174.77646 * 9 7 2 30 30 H 0.96996 * 119.99537 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.86717 * 59.66558 * 10 9 7 32 32 H 1.08997 * 109.97743 * 298.61488 * 10 9 7 33 33 H 1.09001 * 110.75630 * 97.55161 * 11 10 9 34 34 H 1.08998 * 110.76214 * 220.74753 * 11 10 9 35 35 H 1.09000 * 113.84615 * 332.80441 * 13 12 11 36 36 H 1.08994 * 113.85321 * 104.47424 * 13 12 11 37 37 H 1.09003 * 109.49092 * 290.15988 * 19 17 15 38 38 H 1.08998 * 109.49372 * 50.22160 * 19 17 15 39 39 H 1.09002 * 109.74172 * 289.23024 * 20 19 17 40 40 H 1.08999 * 109.74292 * 168.51297 * 20 19 17 41 41 H 0.96694 * 114.00435 * 269.99865 * 25 24 23 42 42 H 1.08992 * 109.60556 * 43.19384 * 27 26 24 43 43 H 1.08993 * 109.73729 * 282.78348 * 27 26 24 44 44 H 1.09003 * 113.85518 * 222.35081 * 28 14 13 45 45 H 1.09001 * 113.97055 * 90.69858 * 28 14 13 46 46 H 1.08996 * 110.40303 * 321.22176 * 29 9 7 47 47 H 1.09002 * 110.39751 * 83.51232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2058 0.1155 9 7 1.3333 -2.3837 -0.1446 10 6 -0.1297 -2.5311 -0.1999 11 6 -0.4350 -4.0343 -0.3927 12 6 0.8824 -4.5815 -0.9638 13 6 0.9700 -4.6888 -2.4813 14 7 1.6953 -5.9540 -2.2356 15 6 2.5740 -6.6892 -2.9455 16 8 3.0201 -7.7167 -2.4807 17 6 3.0026 -6.2341 -4.3168 18 1 2.1295 -6.1660 -4.9658 19 6 3.9942 -7.2435 -4.9019 20 6 4.2411 -6.9161 -6.3809 21 6 4.5428 -5.4425 -6.4901 22 7 5.0767 -4.7951 -7.4778 23 7 5.1705 -3.5448 -7.1802 24 6 4.6942 -3.3346 -5.9740 25 8 4.6292 -2.1454 -5.3272 26 7 4.2800 -4.5341 -5.5012 27 6 3.6697 -4.8574 -4.2124 28 6 1.0722 -6.0920 -0.9015 29 6 1.9521 -3.7191 -0.2705 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5279 -1.9615 -1.0397 32 1 -0.5749 -2.1790 0.7306 33 1 -0.6680 -4.5067 0.5616 34 1 -1.2512 -4.1751 -1.1013 35 1 0.0048 -4.8218 -2.9700 36 1 1.5806 -3.9133 -2.9435 37 1 4.9355 -7.1874 -4.3551 38 1 3.5829 -8.2492 -4.8159 39 1 3.3514 -7.1538 -6.9641 40 1 5.0889 -7.4937 -6.7493 41 1 5.4125 -1.9421 -4.7979 42 1 2.9206 -4.1059 -3.9637 43 1 4.4361 -4.8802 -3.4377 44 1 1.7630 -6.4178 -0.1239 45 1 0.1383 -6.6542 -0.9050 46 1 2.8516 -3.6648 -0.8837 47 1 2.1881 -4.1228 0.7141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072867511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:54 Heat of formation + Delta-G solvation = 54.532631 kcal Electronic energy + Delta-G solvation = -31755.006462 eV Core-core repulsion = 27554.984051 eV Total energy + Delta-G solvation = -4200.022411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.38017 -41.94719 -40.06736 -38.78017 -37.86215 -37.23308 -34.37879 -34.13091 -32.53649 -31.28981 -30.14739 -29.52704 -27.60735 -27.34971 -26.19323 -25.32082 -24.05293 -23.45488 -22.13289 -21.32993 -20.33585 -20.03128 -19.50547 -18.83512 -18.30580 -17.85688 -17.66753 -17.05830 -16.70494 -16.41455 -16.02123 -15.96075 -15.67029 -15.58823 -15.49703 -15.29161 -14.40592 -14.32323 -14.19250 -13.80056 -13.69991 -13.59322 -13.29424 -13.22182 -12.97121 -12.89374 -12.84126 -12.78134 -12.46117 -12.28203 -12.10521 -12.02107 -11.92548 -11.76108 -11.68386 -11.37914 -11.35515 -11.19892 -10.80799 -10.64892 -10.16550 -9.76985 -8.86718 -7.85352 -5.18222 0.47717 0.93454 1.45337 1.46302 1.47637 1.54523 1.55154 1.68750 2.48929 2.63859 3.04237 3.06951 3.26737 3.30280 3.40400 3.44383 3.63779 3.69828 3.81840 3.87847 3.97119 4.10874 4.19550 4.20094 4.27690 4.41725 4.49778 4.54928 4.60597 4.67514 4.71747 4.75646 4.77739 4.84104 4.94872 4.96467 4.98170 5.08452 5.11296 5.13870 5.22032 5.48605 5.48971 5.72746 5.83492 6.22213 6.34549 6.59640 6.97740 7.12862 7.46659 7.79823 8.43138 9.24838 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.003882 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.938025 B = 7210.302079 C = 9551.884260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.078 0.922 9 N -0.624 5.624 10 C 0.182 3.818 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.122 3.878 14 N -0.637 5.637 15 C 0.547 3.453 16 O -0.566 6.566 17 C -0.109 4.109 18 H 0.127 0.873 19 C -0.100 4.100 20 C -0.025 4.025 21 C 0.198 3.802 22 N -0.310 5.310 23 N -0.328 5.328 24 C 0.355 3.645 25 O -0.442 6.442 26 N -0.478 5.478 27 C 0.114 3.886 28 C 0.132 3.868 29 C 0.161 3.839 30 H 0.246 0.754 31 H 0.016 0.984 32 H 0.001 0.999 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.428 0.572 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.037 0.963 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -16.814 -8.247 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.057 3.943 11 C -0.152 4.152 12 C -0.101 4.101 13 C 0.000 4.000 14 N -0.371 5.371 15 C 0.336 3.664 16 O -0.446 6.446 17 C -0.130 4.130 18 H 0.145 0.855 19 C -0.138 4.138 20 C -0.064 4.064 21 C -0.070 4.070 22 N -0.151 5.151 23 N -0.178 5.178 24 C 0.049 3.951 25 O -0.245 6.245 26 N -0.182 5.182 27 C -0.009 4.009 28 C 0.010 3.990 29 C 0.036 3.964 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.289 0.711 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.134 0.866 46 H 0.056 0.944 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.663 -16.737 -9.576 19.627 hybrid contribution 0.185 1.763 1.947 2.633 sum 3.848 -14.974 -7.629 17.241 Atomic orbital electron populations 1.70164 1.06085 1.25104 1.58014 1.25492 0.96409 1.00475 1.02680 0.85247 0.77982 0.80052 0.77204 1.21565 1.22470 1.19449 1.19340 0.91437 0.83859 1.42126 0.90375 1.44819 1.02544 1.01738 1.85945 1.21004 0.83466 0.92185 0.97606 1.22510 0.95935 0.95025 1.01707 1.22381 0.97310 0.94746 0.95694 1.23268 0.97236 0.83597 0.95880 1.50288 1.42250 1.25064 1.19524 1.19983 0.78229 0.82401 0.85791 1.90716 1.57160 1.25488 1.71205 1.21620 1.01841 0.94398 0.95141 0.85467 1.21542 0.98806 0.99701 0.93749 1.20552 1.06188 0.82132 0.97563 1.25429 0.99935 0.96352 0.85310 1.73922 1.19230 0.97972 1.23947 1.74763 1.21900 1.10112 1.11045 1.21953 1.00564 0.81723 0.90848 1.84919 1.46977 1.27265 1.65318 1.46685 1.47402 1.07580 1.16488 1.22077 0.99074 0.97944 0.81770 1.23051 0.98362 0.93896 0.83691 1.21219 0.94063 0.84621 0.96525 0.94493 0.96558 0.98112 0.90225 0.88851 0.86567 0.90400 0.90982 0.87273 0.85925 0.85439 0.71107 0.87738 0.88456 0.90067 0.86610 0.94444 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.05 10.35 21.65 0.22 -53.82 16 2 C -0.06 -3.08 5.48 84.86 0.46 -2.61 16 3 Si 0.97 44.02 29.56 68.60 2.03 46.05 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.24 -12.47 10.26 84.03 0.86 -11.61 16 8 H 0.08 3.95 7.84 -2.91 -0.02 3.92 16 9 N -0.62 -28.75 3.41 -692.37 -2.36 -31.11 16 10 C 0.18 7.94 5.40 86.80 0.47 8.41 16 11 C -0.11 -3.19 6.34 31.36 0.20 -2.99 16 12 C -0.10 -2.52 1.00 -51.99 -0.05 -2.57 16 13 C 0.12 2.53 7.54 85.91 0.65 3.17 16 14 N -0.64 -12.88 3.58 -863.61 -3.09 -15.97 16 15 C 0.55 11.36 7.36 87.66 0.65 12.00 16 16 O -0.57 -15.37 16.54 -3.02 -0.05 -15.42 16 17 C -0.11 -1.66 2.36 -11.39 -0.03 -1.69 16 18 H 0.13 1.56 8.12 -2.39 -0.02 1.54 16 19 C -0.10 -1.27 4.68 30.79 0.14 -1.12 16 20 C -0.03 -0.29 6.34 30.04 0.19 -0.10 16 21 C 0.20 4.18 7.78 137.84 1.07 5.25 16 22 N -0.31 -8.77 12.17 -49.73 -0.61 -9.38 16 23 N -0.33 -10.20 12.24 -173.87 -2.13 -12.33 16 24 C 0.35 9.43 9.30 179.88 1.67 11.10 16 25 O -0.44 -10.53 13.64 -88.41 -1.21 -11.74 16 26 N -0.48 -10.41 3.16 -630.20 -1.99 -12.41 16 27 C 0.11 2.06 6.07 86.55 0.53 2.59 16 28 C 0.13 2.62 8.22 85.90 0.71 3.32 16 29 C 0.16 5.58 6.67 86.45 0.58 6.15 16 30 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.02 0.80 7.30 -2.38 -0.02 0.78 16 32 H 0.00 0.03 7.60 -2.39 -0.02 0.01 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.14 7.99 -2.39 -0.02 2.12 16 35 H 0.12 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.08 1.81 5.73 -2.39 -0.01 1.79 16 37 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 38 H 0.11 1.26 7.78 -2.39 -0.02 1.24 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.43 5.88 9.06 -74.06 -0.67 5.21 16 42 H 0.10 2.06 5.42 -2.39 -0.01 2.04 16 43 H 0.10 1.76 8.12 -2.39 -0.02 1.74 16 44 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 45 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.28 8.07 -2.39 -0.02 1.27 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -76.64 377.11 -0.74 -77.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.34 Total: 9.43 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 8.10 Total: 29.31 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -9.95 Total: -135.02 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -1.26 Total: -27.16 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -76.64 -0.74 -77.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072867511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.918 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds