Wall clock time and date at job start Wed Apr 1 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46767 * 269.99954 * 3 2 1 5 5 H 1.48507 * 109.47273 * 29.99779 * 3 2 1 6 6 H 1.48493 * 109.47344 * 149.99772 * 3 2 1 7 7 C 1.38814 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64897 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27275 * 178.98347 * 10 9 7 12 12 H 1.08997 * 110.72026 * 96.16474 * 11 10 9 13 13 O 1.42894 * 110.87491 * 219.37186 * 11 10 9 14 14 C 1.55158 * 102.93770 * 337.80451 * 11 10 9 15 15 H 1.08996 * 111.00738 * 277.38786 * 14 11 10 16 16 N 1.46504 * 111.00370 * 153.57662 * 14 11 10 17 17 C 1.34779 * 120.00248 * 154.99865 * 16 14 11 18 18 O 1.21287 * 119.99534 * 359.97438 * 17 16 14 19 19 C 1.50698 * 120.00080 * 179.97438 * 17 16 14 20 20 H 1.08996 * 109.53585 * 300.09800 * 19 17 16 21 21 C 1.53115 * 109.50285 * 60.19775 * 19 17 16 22 22 C 1.53116 * 109.16149 * 177.59266 * 21 19 17 23 23 C 1.53040 * 109.27958 * 302.34618 * 22 21 19 24 24 N 1.46840 * 109.52134 * 59.17877 * 23 22 21 25 25 C 1.46900 * 111.00036 * 174.16025 * 24 23 22 26 26 C 1.52997 * 109.47287 * 201.02754 * 25 24 23 27 27 F 1.39899 * 109.47160 * 54.21486 * 26 25 24 28 28 F 1.39897 * 109.47229 * 294.21405 * 26 25 24 29 29 C 1.46851 * 111.19926 * 298.25715 * 24 23 22 30 30 C 1.47422 * 125.64694 * 180.02562 * 9 7 2 31 31 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.88389 * 59.56406 * 10 9 7 33 33 H 1.09001 * 110.01142 * 298.46969 * 10 9 7 34 34 H 0.96703 * 114.00244 * 293.61045 * 13 11 10 35 35 H 0.97000 * 119.99965 * 335.00119 * 16 14 11 36 36 H 1.09005 * 109.52684 * 297.50040 * 21 19 17 37 37 H 1.09003 * 109.52735 * 57.62301 * 21 19 17 38 38 H 1.08999 * 109.50215 * 62.28567 * 22 21 19 39 39 H 1.09000 * 109.50584 * 182.36417 * 22 21 19 40 40 H 1.08996 * 109.46269 * 299.15987 * 23 22 21 41 41 H 1.08996 * 109.46078 * 179.19392 * 23 22 21 42 42 H 1.08999 * 109.47090 * 81.02865 * 25 24 23 43 43 H 1.08998 * 109.47076 * 321.02875 * 25 24 23 44 44 H 1.09000 * 109.47006 * 174.21410 * 26 25 24 45 45 H 1.09003 * 109.46233 * 181.76000 * 29 24 23 46 46 H 1.08998 * 109.46109 * 301.73901 * 29 24 23 47 47 H 1.09004 * 110.36454 * 85.24480 * 30 9 7 48 48 H 1.09005 * 110.36835 * 322.92896 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4485 -4.0441 -0.0224 12 1 -0.6309 -4.4172 0.9853 13 8 -1.5642 -4.3203 -0.8714 14 6 0.8515 -4.6566 -0.6076 15 1 0.8554 -4.5983 -1.6960 16 7 1.0291 -6.0396 -0.1580 17 6 1.7587 -6.8997 -0.8958 18 8 2.2680 -6.5288 -1.9322 19 6 1.9418 -8.3221 -0.4330 20 1 2.4316 -8.3284 0.5407 21 6 0.5752 -9.0036 -0.3222 22 6 0.7741 -10.4647 0.0901 23 6 1.6706 -11.1617 -0.9358 24 7 2.9657 -10.4730 -1.0039 25 6 3.9011 -11.1957 -1.8761 26 6 5.3357 -10.7898 -1.5328 27 9 5.5613 -10.9853 -0.1660 28 9 5.5269 -9.4405 -1.8487 29 6 2.8045 -9.0812 -1.4437 30 6 1.9335 -3.7311 0.0028 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5582 -2.0529 -0.8809 33 1 -0.5560 -2.0832 0.9033 34 1 -2.4017 -3.9588 -0.5504 35 1 0.6214 -6.3363 0.6707 36 1 -0.0273 -8.4920 0.4285 37 1 0.0681 -8.9620 -1.2863 38 1 1.2455 -10.5047 1.0721 39 1 -0.1927 -10.9665 0.1299 40 1 1.1923 -11.1334 -1.9148 41 1 1.8259 -12.1984 -0.6374 42 1 3.6926 -10.9479 -2.9169 43 1 3.7815 -12.2688 -1.7271 44 1 6.0331 -11.3997 -2.1070 45 1 3.7834 -8.6069 -1.5143 46 1 2.3207 -9.0626 -2.4203 47 1 2.1671 -4.0409 1.0215 48 1 2.8327 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077583618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:57 Heat of formation + Delta-G solvation = -157.528654 kcal Electronic energy + Delta-G solvation = -31875.079073 eV Core-core repulsion = 27215.171809 eV Total energy + Delta-G solvation = -4659.907265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.07894 -47.07568 -40.27650 -38.73973 -37.62919 -35.06265 -34.41314 -33.87137 -31.76836 -31.17616 -29.47352 -28.33954 -27.03144 -24.78303 -24.51276 -23.73771 -22.31746 -20.95328 -20.46881 -20.19447 -19.70875 -17.94291 -17.49054 -17.32391 -17.00301 -16.67602 -16.31908 -15.89722 -15.56189 -15.26081 -14.82802 -14.63594 -14.40771 -14.09316 -14.04345 -13.95841 -13.65693 -13.42229 -13.35722 -13.09388 -12.79354 -12.66798 -12.59305 -12.36270 -12.24740 -12.02989 -11.71746 -11.51256 -11.45558 -11.24454 -11.18996 -10.92335 -10.87410 -10.80559 -10.40164 -10.14951 -9.89456 -9.82688 -9.64595 -9.26837 -8.80513 -8.73696 -8.60273 -6.90020 -5.75094 -3.09490 2.83525 3.09657 3.40542 3.45140 3.46591 3.49094 3.69212 3.98746 4.18349 4.40996 4.45356 4.52474 4.60769 4.63846 4.70747 4.89589 4.98179 5.00171 5.11903 5.17028 5.22093 5.26871 5.40917 5.44497 5.45456 5.59518 5.61741 5.66613 5.68877 5.75915 5.84427 5.96167 6.05189 6.10620 6.15893 6.55180 6.58004 6.64100 6.66467 6.92067 7.33459 7.47864 7.71016 7.76724 8.12023 8.18719 8.45268 9.16499 9.76521 10.39639 11.36730 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002463 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.439092 B =11366.850701 C =12686.284877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.056 0.944 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.104 0.896 16 N -0.713 5.713 17 C 0.519 3.481 18 O -0.538 6.538 19 C -0.102 4.102 20 H 0.105 0.895 21 C -0.113 4.113 22 C -0.114 4.114 23 C 0.054 3.946 24 N -0.534 5.534 25 C 0.003 3.997 26 C 0.268 3.732 27 F -0.196 7.196 28 F -0.200 7.200 29 C 0.061 3.939 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.045 0.955 47 H 0.024 0.976 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -27.201 -0.119 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.074 0.926 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.122 0.878 16 N -0.363 5.363 17 C 0.304 3.696 18 O -0.415 6.415 19 C -0.123 4.123 20 H 0.123 0.877 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.073 4.073 24 N -0.259 5.259 25 C -0.127 4.127 26 C 0.214 3.786 27 F -0.178 7.178 28 F -0.182 7.182 29 C -0.067 4.067 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.672 -26.962 -0.731 27.104 hybrid contribution -0.564 1.176 0.075 1.306 sum 2.109 -25.785 -0.656 25.880 Atomic orbital electron populations 1.69928 1.04933 1.25178 1.57188 1.24818 0.95788 0.97783 1.02037 0.86061 0.78570 0.83145 0.77657 1.21490 1.21650 1.20600 1.19101 0.90576 0.82080 1.43818 0.90125 1.44243 1.01203 0.99918 1.87417 1.21804 0.85416 0.87818 1.02134 1.23461 0.85560 0.98539 0.91614 0.92568 1.86467 1.18683 1.79813 1.51835 1.22251 0.94339 0.79155 1.00987 0.87776 1.45905 1.53101 1.11362 1.25961 1.20430 0.78150 0.86974 0.84038 1.90719 1.47980 1.78796 1.23989 1.21280 0.97741 0.91586 1.01723 0.87663 1.21588 0.95216 0.95820 1.02484 1.21567 0.99126 0.94918 0.99552 1.22157 0.88768 0.97879 0.98517 1.61839 1.11071 1.02511 1.50452 1.23204 0.91584 1.00613 0.97269 1.21956 0.97835 0.79768 0.79026 1.92997 1.95770 1.94812 1.34202 1.92956 1.96100 1.36508 1.92606 1.22217 1.01974 0.86826 0.95659 1.21851 0.94905 0.85697 0.97303 0.93677 0.92161 0.93347 0.77748 0.76973 0.90914 0.91489 0.90603 0.90913 0.94539 0.90489 0.91303 0.87893 0.87216 0.87985 0.93697 0.95840 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.59 3.39 -170.07 -0.58 -16.17 16 10 C 0.15 3.69 5.15 -3.07 -0.02 3.67 16 11 C 0.07 1.27 3.97 -24.90 -0.10 1.17 16 12 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 13 O -0.56 -9.78 13.40 -35.23 -0.47 -10.25 16 14 C 0.14 2.65 3.15 -65.78 -0.21 2.44 16 15 H 0.10 2.32 7.54 -51.93 -0.39 1.93 16 16 N -0.71 -10.72 5.10 -51.73 -0.26 -10.98 16 17 C 0.52 8.06 7.16 -10.99 -0.08 7.98 16 18 O -0.54 -10.67 15.62 5.55 0.09 -10.58 16 19 C -0.10 -1.17 2.69 -91.69 -0.25 -1.41 16 20 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 21 C -0.11 -1.02 5.16 -26.61 -0.14 -1.16 16 22 C -0.11 -0.81 6.09 -26.65 -0.16 -0.98 16 23 C 0.05 0.39 5.42 -3.84 -0.02 0.37 16 24 N -0.53 -4.88 4.40 -234.68 -1.03 -5.91 16 25 C 0.00 0.02 5.38 -3.83 -0.02 0.00 16 26 C 0.27 2.08 5.59 37.16 0.21 2.28 16 27 F -0.20 -2.03 17.15 2.25 0.04 -1.99 16 28 F -0.20 -2.28 14.68 2.25 0.03 -2.24 16 29 C 0.06 0.71 3.80 -3.83 -0.01 0.70 16 30 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 33 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 34 H 0.38 4.94 9.12 45.56 0.42 5.35 16 35 H 0.40 4.73 8.05 -40.82 -0.33 4.40 16 36 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 42 H 0.07 0.44 7.98 -51.93 -0.41 0.02 16 43 H 0.10 0.45 7.77 -51.93 -0.40 0.04 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 1.41 5.44 -51.93 -0.28 1.13 16 46 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -35.24 384.84 -8.65 -43.88 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.75 Total: 6.65 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.06 Total: 10.95 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -1.30 Total: -59.53 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.39 Total: -20.83 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.07 Total: -4.23 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.24 -8.65 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077583618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.644 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds