Wall clock time and date at job start Wed Apr 1 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46767 * 269.99954 * 3 2 1 5 5 H 1.48507 * 109.47273 * 29.99779 * 3 2 1 6 6 H 1.48493 * 109.47344 * 149.99772 * 3 2 1 7 7 C 1.38814 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64897 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27275 * 178.98347 * 10 9 7 12 12 H 1.08997 * 110.72026 * 96.16474 * 11 10 9 13 13 O 1.42894 * 110.87491 * 219.37186 * 11 10 9 14 14 C 1.55158 * 102.93770 * 337.80451 * 11 10 9 15 15 H 1.08996 * 111.00738 * 277.38786 * 14 11 10 16 16 N 1.46504 * 111.00370 * 153.57662 * 14 11 10 17 17 C 1.34779 * 120.00248 * 154.99865 * 16 14 11 18 18 O 1.21287 * 119.99534 * 359.97438 * 17 16 14 19 19 C 1.50698 * 120.00080 * 179.97438 * 17 16 14 20 20 H 1.08996 * 109.53585 * 300.09800 * 19 17 16 21 21 C 1.53115 * 109.50285 * 60.19775 * 19 17 16 22 22 C 1.53116 * 109.16149 * 177.59266 * 21 19 17 23 23 C 1.53040 * 109.27958 * 302.34618 * 22 21 19 24 24 N 1.46840 * 109.52134 * 59.17877 * 23 22 21 25 25 C 1.46900 * 111.00036 * 174.16025 * 24 23 22 26 26 C 1.52997 * 109.47287 * 201.02754 * 25 24 23 27 27 F 1.39899 * 109.47160 * 54.21486 * 26 25 24 28 28 F 1.39897 * 109.47229 * 294.21405 * 26 25 24 29 29 C 1.46851 * 111.19926 * 298.25715 * 24 23 22 30 30 C 1.47422 * 125.64694 * 180.02562 * 9 7 2 31 31 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.88389 * 59.56406 * 10 9 7 33 33 H 1.09001 * 110.01142 * 298.46969 * 10 9 7 34 34 H 0.96703 * 114.00244 * 293.61045 * 13 11 10 35 35 H 0.97000 * 119.99965 * 335.00119 * 16 14 11 36 36 H 1.09005 * 109.52684 * 297.50040 * 21 19 17 37 37 H 1.09003 * 109.52735 * 57.62301 * 21 19 17 38 38 H 1.08999 * 109.50215 * 62.28567 * 22 21 19 39 39 H 1.09000 * 109.50584 * 182.36417 * 22 21 19 40 40 H 1.08996 * 109.46269 * 299.15987 * 23 22 21 41 41 H 1.08996 * 109.46078 * 179.19392 * 23 22 21 42 42 H 1.08999 * 109.47090 * 81.02865 * 25 24 23 43 43 H 1.08998 * 109.47076 * 321.02875 * 25 24 23 44 44 H 1.09000 * 109.47006 * 174.21410 * 26 25 24 45 45 H 1.09003 * 109.46233 * 181.76000 * 29 24 23 46 46 H 1.08998 * 109.46109 * 301.73901 * 29 24 23 47 47 H 1.09004 * 110.36454 * 85.24480 * 30 9 7 48 48 H 1.09005 * 110.36835 * 322.92896 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4485 -4.0441 -0.0224 12 1 -0.6309 -4.4172 0.9853 13 8 -1.5642 -4.3203 -0.8714 14 6 0.8515 -4.6566 -0.6076 15 1 0.8554 -4.5983 -1.6960 16 7 1.0291 -6.0396 -0.1580 17 6 1.7587 -6.8997 -0.8958 18 8 2.2680 -6.5288 -1.9322 19 6 1.9418 -8.3221 -0.4330 20 1 2.4316 -8.3284 0.5407 21 6 0.5752 -9.0036 -0.3222 22 6 0.7741 -10.4647 0.0901 23 6 1.6706 -11.1617 -0.9358 24 7 2.9657 -10.4730 -1.0039 25 6 3.9011 -11.1957 -1.8761 26 6 5.3357 -10.7898 -1.5328 27 9 5.5613 -10.9853 -0.1660 28 9 5.5269 -9.4405 -1.8487 29 6 2.8045 -9.0812 -1.4437 30 6 1.9335 -3.7311 0.0028 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5582 -2.0529 -0.8809 33 1 -0.5560 -2.0832 0.9033 34 1 -2.4017 -3.9588 -0.5504 35 1 0.6214 -6.3363 0.6707 36 1 -0.0273 -8.4920 0.4285 37 1 0.0681 -8.9620 -1.2863 38 1 1.2455 -10.5047 1.0721 39 1 -0.1927 -10.9665 0.1299 40 1 1.1923 -11.1334 -1.9148 41 1 1.8259 -12.1984 -0.6374 42 1 3.6926 -10.9479 -2.9169 43 1 3.7815 -12.2688 -1.7271 44 1 6.0331 -11.3997 -2.1070 45 1 3.7834 -8.6069 -1.5143 46 1 2.3207 -9.0626 -2.4203 47 1 2.1671 -4.0409 1.0215 48 1 2.8327 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077583618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:56 Heat of formation + Delta-G solvation = -186.129881 kcal Electronic energy + Delta-G solvation = -31876.319316 eV Core-core repulsion = 27215.171809 eV Total energy + Delta-G solvation = -4661.147507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.77883 -47.79838 -41.44616 -39.94902 -38.95509 -36.69811 -35.66285 -34.96492 -33.58115 -32.08849 -30.32222 -29.94159 -28.76075 -26.52411 -25.20423 -24.90010 -22.95025 -22.45608 -22.01301 -21.60256 -20.66984 -19.14590 -18.62647 -18.38456 -18.17348 -17.94617 -17.39194 -17.11956 -16.70924 -16.38956 -16.10876 -15.77427 -15.73093 -15.34905 -15.23988 -14.80309 -14.75821 -14.50685 -14.40043 -14.27428 -14.16358 -14.00905 -13.77239 -13.47889 -13.26936 -13.18286 -13.13961 -12.90207 -12.75594 -12.75222 -12.48206 -12.15760 -12.10152 -11.90841 -11.82737 -11.67079 -11.56312 -11.11546 -11.06323 -10.79476 -10.71052 -10.17584 -9.43011 -8.99300 -7.90867 -5.28304 1.44199 1.46687 1.55114 1.58214 1.97312 2.45820 2.74707 3.08449 3.11028 3.29850 3.48364 3.52946 3.53784 3.67693 3.75365 3.85383 3.88947 4.03598 4.08954 4.12193 4.22371 4.25263 4.31087 4.42913 4.52236 4.54380 4.56334 4.62155 4.72653 4.77304 4.79524 4.92224 4.97735 5.00383 5.10672 5.19148 5.34511 5.40623 5.41838 5.44956 5.64214 5.89277 6.00729 6.11419 6.51536 6.85711 7.02762 7.22383 7.66836 8.29314 9.18850 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002463 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.439092 B =11366.850701 C =12686.284877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.161 3.839 11 C 0.093 3.907 12 H 0.096 0.904 13 O -0.568 6.568 14 C 0.153 3.847 15 H 0.069 0.931 16 N -0.698 5.698 17 C 0.516 3.484 18 O -0.586 6.586 19 C -0.091 4.091 20 H 0.117 0.883 21 C -0.109 4.109 22 C -0.109 4.109 23 C 0.051 3.949 24 N -0.541 5.541 25 C 0.001 3.999 26 C 0.255 3.745 27 F -0.213 7.213 28 F -0.226 7.226 29 C 0.067 3.933 30 C 0.130 3.870 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.028 0.972 34 H 0.396 0.604 35 H 0.417 0.583 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.044 0.956 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -29.860 1.171 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.032 3.968 12 H 0.114 0.886 13 O -0.376 6.376 14 C 0.046 3.954 15 H 0.087 0.913 16 N -0.349 5.349 17 C 0.303 3.697 18 O -0.466 6.466 19 C -0.113 4.113 20 H 0.135 0.865 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.076 4.076 24 N -0.266 5.266 25 C -0.128 4.128 26 C 0.202 3.798 27 F -0.194 7.194 28 F -0.208 7.208 29 C -0.061 4.061 30 C 0.004 3.996 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.246 0.754 35 H 0.254 0.746 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.153 0.847 44 H 0.171 0.829 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.256 -29.673 0.596 29.765 hybrid contribution -0.422 1.957 -0.378 2.038 sum 1.834 -27.716 0.218 27.777 Atomic orbital electron populations 1.70130 1.06142 1.25586 1.57770 1.25663 0.96769 1.00980 1.02018 0.85042 0.77747 0.78853 0.77452 1.21494 1.21426 1.19354 1.19446 0.91002 0.83518 1.43867 0.90207 1.44515 1.02327 1.00771 1.87381 1.21622 0.84226 0.91452 0.99151 1.23140 0.85695 0.94389 0.93551 0.88623 1.86434 1.19409 1.79601 1.52169 1.21711 0.93911 0.80994 0.98811 0.91295 1.45668 1.53095 1.09463 1.26699 1.21252 0.76806 0.88444 0.83161 1.90702 1.49797 1.79851 1.26257 1.21268 0.99635 0.88617 1.01742 0.86482 1.21613 0.93317 0.97298 1.02493 1.21575 1.00261 0.93356 0.99446 1.22294 0.87833 0.98848 0.98663 1.61863 1.12478 1.01340 1.50883 1.23364 0.90347 1.02049 0.97048 1.22610 0.99760 0.78900 0.78547 1.92956 1.95955 1.94786 1.35725 1.92909 1.96322 1.38820 1.92741 1.22004 1.00292 0.88794 0.95003 1.21936 0.94927 0.84769 0.98000 0.94081 0.96231 0.95428 0.75358 0.74576 0.89365 0.92631 0.90263 0.88784 0.94674 0.88168 0.90975 0.84694 0.82936 0.90601 0.95510 0.93871 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.83 10.31 21.65 0.22 -56.60 16 2 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 3 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.25 -14.50 10.28 84.03 0.86 -13.64 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -33.16 3.39 -691.99 -2.35 -35.51 16 10 C 0.16 7.90 5.15 86.73 0.45 8.34 16 11 C 0.09 3.34 3.97 31.78 0.13 3.47 16 12 H 0.10 2.78 8.00 -2.39 -0.02 2.76 16 13 O -0.57 -18.97 13.40 -148.98 -2.00 -20.97 16 14 C 0.15 5.87 3.15 46.38 0.15 6.01 16 15 H 0.07 3.19 7.54 -2.39 -0.02 3.17 16 16 N -0.70 -20.15 5.10 -435.95 -2.22 -22.37 16 17 C 0.52 15.97 7.16 87.66 0.63 16.60 16 18 O -0.59 -24.17 15.62 -3.05 -0.05 -24.22 16 19 C -0.09 -1.99 2.69 -11.49 -0.03 -2.02 16 20 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 21 C -0.11 -1.71 5.16 30.67 0.16 -1.55 16 22 C -0.11 -1.18 6.09 30.65 0.19 -1.00 16 23 C 0.05 0.58 5.42 86.33 0.47 1.05 16 24 N -0.54 -8.92 4.40 -896.38 -3.95 -12.87 16 25 C 0.00 0.01 5.38 86.30 0.46 0.47 16 26 C 0.26 3.61 5.59 71.98 0.40 4.01 16 27 F -0.21 -4.13 17.15 44.97 0.77 -3.36 16 28 F -0.23 -5.23 14.68 44.97 0.66 -4.57 16 29 C 0.07 1.58 3.80 86.32 0.33 1.91 16 30 C 0.13 5.78 6.93 86.86 0.60 6.38 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 33 H 0.03 1.45 7.50 -2.39 -0.02 1.43 16 34 H 0.40 9.69 9.12 -74.06 -0.68 9.01 16 35 H 0.42 8.73 8.05 -92.71 -0.75 7.98 16 36 H 0.09 1.11 7.66 -2.38 -0.02 1.09 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 0.74 7.92 -2.39 -0.02 0.72 16 42 H 0.07 0.81 7.98 -2.39 -0.02 0.79 16 43 H 0.14 0.68 7.77 -2.39 -0.02 0.66 16 44 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 2.19 5.44 -2.39 -0.01 2.17 16 46 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 47 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 48 H 0.03 1.44 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -81.01 384.84 -2.06 -83.06 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.43 Total: 21.85 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 5.25 Total: 26.98 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -8.30 Total: -127.35 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -2.04 Total: -45.19 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 1.43 Total: -7.93 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -81.01 -2.06 -83.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077583618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.067 kcal (2) G-P(sol) polarization free energy of solvation -81.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds