Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00311 * 2 1 4 4 H 1.48498 * 109.46833 * 274.96613 * 3 2 1 5 5 H 1.48496 * 109.46854 * 34.96527 * 3 2 1 6 6 H 1.48503 * 109.47042 * 154.96454 * 3 2 1 7 7 C 1.38813 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99913 * 194.42483 * 7 2 1 9 9 N 1.36938 * 120.00326 * 14.42412 * 7 2 1 10 10 C 1.46534 * 119.74113 * 205.17121 * 9 7 2 11 11 C 1.53148 * 108.25445 * 236.44558 * 10 9 7 12 12 C 1.53062 * 109.21306 * 301.59174 * 11 10 9 13 13 H 1.08998 * 113.83905 * 274.47910 * 12 11 10 14 14 C 1.54083 * 111.39226 * 142.39807 * 12 11 10 15 15 N 1.47293 * 87.60432 * 273.97066 * 14 12 11 16 16 C 1.34772 * 136.53946 * 151.36553 * 15 14 12 17 17 O 1.21280 * 119.99774 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.00453 * 0.02562 * 16 15 14 19 19 H 1.09002 * 109.41227 * 59.91037 * 18 16 15 20 20 C 1.53124 * 109.44224 * 179.82796 * 18 16 15 21 21 C 1.53470 * 109.38063 * 189.79545 * 20 18 16 22 22 C 1.50803 * 108.08051 * 311.11965 * 21 20 18 23 23 N 1.29605 * 128.72936 * 195.98756 * 22 21 20 24 24 N 1.28876 * 109.79270 * 179.81177 * 23 22 21 25 25 C 1.31380 * 109.92714 * 0.03475 * 24 23 22 26 26 O 1.35538 * 126.57278 * 180.02562 * 25 24 23 27 27 N 1.35422 * 106.84525 * 0.03624 * 25 24 23 28 28 C 1.46205 * 129.14265 * 179.85413 * 27 25 24 29 29 C 1.46460 * 86.91138 * 331.62355 * 15 14 12 30 30 H 1.09001 * 111.44356 * 276.12310 * 29 15 14 31 31 C 1.45696 * 119.73710 * 25.20008 * 9 7 2 32 32 H 0.97006 * 119.99600 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.70917 * 116.75452 * 10 9 7 34 34 H 1.09001 * 109.70875 * 356.13632 * 10 9 7 35 35 H 1.08999 * 109.51615 * 181.66859 * 11 10 9 36 36 H 1.09000 * 109.55426 * 61.53729 * 11 10 9 37 37 H 1.08999 * 113.53010 * 159.29036 * 14 12 11 38 38 H 1.09003 * 113.59020 * 28.66260 * 14 12 11 39 39 H 1.08996 * 109.48495 * 309.76558 * 20 18 16 40 40 H 1.09000 * 109.49062 * 69.82747 * 20 18 16 41 41 H 1.08996 * 109.75111 * 191.46605 * 21 20 18 42 42 H 1.09000 * 109.76500 * 70.78276 * 21 20 18 43 43 H 0.96705 * 113.99229 * 269.99065 * 26 25 24 44 44 H 1.08995 * 109.60340 * 77.28377 * 28 27 25 45 45 H 1.09001 * 109.60518 * 316.79983 * 28 27 25 46 46 H 1.09001 * 108.78853 * 260.87609 * 31 9 7 47 47 H 1.09001 * 108.79195 * 19.19366 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3928 2.1069 -1.3948 5 1 1.5041 2.6200 0.8023 6 1 3.5963 1.4120 0.5925 7 6 2.0101 -1.2022 0.0005 8 1 3.0647 -1.2169 0.2336 9 7 1.3578 -2.3696 -0.2943 10 6 1.8763 -3.6412 0.2169 11 6 2.1185 -4.5738 -0.9734 12 6 0.8057 -4.7688 -1.7358 13 1 0.1764 -5.5628 -1.3337 14 6 1.0432 -4.8319 -3.2569 15 7 0.9676 -3.3610 -3.2674 16 6 1.4796 -2.3604 -4.0110 17 8 1.2101 -1.2082 -3.7452 18 6 2.3861 -2.6733 -5.1736 19 1 1.8510 -3.2920 -5.8940 20 6 2.8212 -1.3683 -5.8462 21 6 3.5373 -1.6892 -7.1651 22 6 4.5701 -2.7531 -6.8900 23 7 5.5739 -3.1178 -7.6242 24 7 6.2256 -4.0608 -7.0352 25 6 5.6595 -4.3449 -5.8841 26 8 6.0673 -5.2812 -4.9929 27 7 4.5905 -3.5231 -5.7591 28 6 3.6208 -3.4295 -4.6689 29 6 0.0898 -3.4768 -2.1007 30 1 -0.9430 -3.6617 -2.3958 31 6 0.1540 -2.3375 -1.1145 32 1 -0.4850 0.8401 -0.0004 33 1 1.1484 -4.0897 0.8931 34 1 2.8136 -3.4698 0.7463 35 1 2.4772 -5.5381 -0.6134 36 1 2.8627 -4.1331 -1.6367 37 1 0.2327 -5.3132 -3.8043 38 1 2.0250 -5.2192 -3.5294 39 1 1.9441 -0.7537 -6.0489 40 1 3.4998 -0.8277 -5.1863 41 1 4.0252 -0.7925 -7.5470 42 1 2.8166 -2.0559 -7.8961 43 1 5.6761 -6.1544 -5.1332 44 1 4.0631 -2.8901 -3.8314 45 1 3.3313 -4.4308 -4.3499 46 1 -0.7172 -2.3865 -0.4613 47 1 0.1280 -1.3959 -1.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084464161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = 85.253215 kcal Electronic energy + Delta-G solvation = -32723.663119 eV Core-core repulsion = 28524.972852 eV Total energy + Delta-G solvation = -4198.690267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.42181 -40.87792 -38.68455 -37.94488 -36.60904 -35.35750 -33.49726 -32.31221 -31.46737 -30.27304 -29.36902 -28.48307 -27.11402 -25.19198 -23.98031 -23.78382 -22.67435 -22.50543 -21.28485 -20.57281 -19.46863 -19.14521 -17.96171 -17.52308 -16.99121 -16.45131 -16.09799 -15.69595 -15.66075 -15.47571 -14.64674 -14.58259 -14.46229 -14.21192 -13.81825 -13.54762 -13.47348 -13.36468 -12.86891 -12.72737 -12.58868 -12.31446 -12.09372 -12.01683 -11.86187 -11.61465 -11.47012 -11.24896 -11.15148 -10.78939 -10.73665 -10.59787 -10.41718 -10.34532 -10.27945 -9.97833 -9.87109 -9.74693 -9.20530 -9.14607 -8.39342 -8.34041 -6.68873 -5.73768 -3.16205 1.38854 1.85960 2.52138 2.83680 2.97144 3.42814 3.48247 3.48590 3.50656 3.92481 4.10493 4.22927 4.27991 4.46373 4.54749 4.70815 4.77801 4.79645 5.01579 5.04498 5.17026 5.26437 5.30202 5.33059 5.36774 5.44342 5.50336 5.55509 5.59133 5.71145 5.72874 5.77827 5.89569 5.99509 6.00814 6.15487 6.23365 6.28341 6.38408 6.45770 6.66864 6.86478 7.06215 7.37604 7.67122 7.85294 8.08735 8.44293 8.46537 8.49497 9.27488 9.91248 10.38272 11.34403 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004136 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.160754 B = 6768.859877 C = 7613.923254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.014 3.986 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.112 4.112 13 H 0.094 0.906 14 C 0.091 3.909 15 N -0.632 5.632 16 C 0.547 3.453 17 O -0.499 6.499 18 C -0.114 4.114 19 H 0.103 0.897 20 C -0.110 4.110 21 C -0.032 4.032 22 C 0.194 3.806 23 N -0.277 5.277 24 N -0.290 5.290 25 C 0.351 3.649 26 O -0.433 6.433 27 N -0.479 5.479 28 C 0.115 3.885 29 C 0.121 3.879 30 H 0.073 0.927 31 C 0.166 3.834 32 H 0.252 0.748 33 H 0.020 0.980 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.404 0.596 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -13.413 -11.165 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.131 4.131 13 H 0.112 0.888 14 C -0.033 4.033 15 N -0.369 5.369 16 C 0.333 3.667 17 O -0.372 6.372 18 C -0.136 4.136 19 H 0.121 0.879 20 C -0.149 4.149 21 C -0.072 4.072 22 C -0.074 4.074 23 N -0.119 5.119 24 N -0.141 5.141 25 C 0.046 3.954 26 O -0.233 6.233 27 N -0.181 5.181 28 C -0.007 4.007 29 C 0.017 3.983 30 H 0.091 0.909 31 C 0.040 3.960 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.262 0.738 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.049 0.951 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.713 -12.161 -11.912 17.238 hybrid contribution -0.747 0.141 1.003 1.259 sum 1.965 -12.021 -10.909 16.351 Atomic orbital electron populations 1.70002 1.05202 1.25315 1.54224 1.24906 0.95236 0.98091 1.00272 0.86326 0.78986 0.84080 0.77667 1.21307 1.21814 1.20645 1.19095 0.91670 0.84529 1.43179 0.91999 1.43468 1.29680 1.01597 1.55983 1.20720 0.97515 0.87263 0.92425 1.21852 0.94662 0.99473 0.99511 1.22700 0.99013 0.97846 0.93519 0.88780 1.23456 1.00927 0.81493 0.97397 1.49496 1.49871 1.05816 1.31707 1.19289 0.81158 0.84373 0.81836 1.90840 1.59507 1.18898 1.67933 1.21641 0.94772 0.99289 0.97859 0.87902 1.21595 1.02474 0.95693 0.95096 1.20348 0.93434 0.94681 0.98710 1.24724 0.99899 0.98297 0.84435 1.74014 1.04375 1.09341 1.24197 1.74834 1.23576 1.12793 1.02882 1.21809 0.87994 0.93850 0.91707 1.84953 1.67565 1.21373 1.49374 1.46676 1.22843 1.30002 1.18627 1.22052 0.87495 1.03067 0.88113 1.22535 0.92768 0.96990 0.85994 0.90903 1.20181 0.88958 0.96195 0.90691 0.93765 0.96199 0.92563 0.92580 0.92399 0.90187 0.91491 0.88118 0.89927 0.87391 0.88262 0.73847 0.88040 0.88206 0.95142 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 10.94 55.49 0.61 -25.78 16 2 C 0.01 0.39 4.94 -17.43 -0.09 0.30 16 3 Si 0.90 22.63 29.58 -169.99 -5.03 17.60 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.26 -6.97 9.53 -15.06 -0.14 -7.11 16 8 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 9 N -0.58 -13.94 3.03 -175.06 -0.53 -14.47 16 10 C 0.15 2.81 6.46 -3.95 -0.03 2.79 16 11 C -0.12 -1.66 5.69 -26.62 -0.15 -1.81 16 12 C -0.11 -1.43 4.57 -90.46 -0.41 -1.84 16 13 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 14 C 0.09 0.93 7.45 -11.54 -0.09 0.85 16 15 N -0.63 -9.45 3.28 -188.06 -0.62 -10.07 16 16 C 0.55 8.91 7.32 -10.99 -0.08 8.83 16 17 O -0.50 -10.83 15.06 5.56 0.08 -10.75 16 18 C -0.11 -1.31 2.42 -91.53 -0.22 -1.53 16 19 H 0.10 0.96 8.12 -51.93 -0.42 0.53 16 20 C -0.11 -1.25 4.68 -26.42 -0.12 -1.37 16 21 C -0.03 -0.30 6.34 -27.59 -0.17 -0.48 16 22 C 0.19 2.41 7.78 -154.44 -1.20 1.21 16 23 N -0.28 -4.14 12.17 32.93 0.40 -3.74 16 24 N -0.29 -4.42 12.24 29.53 0.36 -4.06 16 25 C 0.35 4.51 9.30 -89.29 -0.83 3.68 16 26 O -0.43 -4.33 13.64 -18.31 -0.25 -4.58 16 27 N -0.48 -5.74 3.16 -115.37 -0.36 -6.11 16 28 C 0.12 1.28 6.09 -4.03 -0.02 1.26 16 29 C 0.12 2.02 3.98 -77.98 -0.31 1.71 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 C 0.17 3.81 4.59 -5.57 -0.03 3.78 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.56 5.72 -51.93 -0.30 0.26 16 39 H 0.10 1.16 7.78 -51.93 -0.40 0.75 16 40 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.40 1.69 9.06 45.56 0.41 2.10 16 44 H 0.10 1.35 8.12 -51.93 -0.42 0.93 16 45 H 0.10 0.90 5.58 -51.93 -0.29 0.61 16 46 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 47 H 0.10 2.85 4.95 -51.93 -0.26 2.59 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -36.43 369.70 -9.49 -45.92 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.83 Total: 0.21 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -3.90 Total: 10.25 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.14 Total: -64.23 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.17 Total: -15.32 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.43 -9.49 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084464161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.174 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds