Wall clock time and date at job start Wed Apr 1 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00749 * 2 1 4 4 H 1.48506 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47622 * 119.99758 * 3 2 1 6 6 H 1.48504 * 109.47107 * 240.00240 * 3 2 1 7 7 C 1.38816 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 154.34838 * 7 2 1 9 9 N 1.36943 * 119.99736 * 334.35752 * 7 2 1 10 10 C 1.50232 * 130.83799 * 341.06467 * 9 7 2 11 11 H 1.08995 * 115.85964 * 0.39532 * 10 9 7 12 12 C 1.55850 * 101.04829 * 234.00633 * 10 9 7 13 13 C 1.54222 * 103.56386 * 327.15021 * 12 10 9 14 14 C 1.50241 * 130.83467 * 161.40761 * 9 7 2 15 15 H 1.09001 * 115.86172 * 359.60880 * 14 9 7 16 16 C 1.55844 * 101.04931 * 233.92553 * 14 9 7 17 17 H 1.09003 * 110.62285 * 85.55674 * 16 14 9 18 18 N 1.46497 * 110.62854 * 208.41490 * 16 14 9 19 19 C 1.34782 * 119.99960 * 274.09518 * 18 16 14 20 20 O 1.21280 * 119.99765 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99724 * 180.02562 * 19 18 16 22 22 H 1.08997 * 109.44168 * 299.92970 * 21 19 18 23 23 C 1.53116 * 109.43948 * 179.97438 * 21 19 18 24 24 C 1.53474 * 109.37610 * 170.19686 * 23 21 19 25 25 C 1.50794 * 108.08781 * 48.88010 * 24 23 21 26 26 N 1.29601 * 128.74344 * 164.09523 * 25 24 23 27 27 N 1.28872 * 109.80103 * 180.13764 * 26 25 24 28 28 C 1.31376 * 109.92882 * 359.95687 * 27 26 25 29 29 O 1.35526 * 126.57995 * 179.97438 * 28 27 26 30 30 N 1.35432 * 106.84068 * 359.95396 * 28 27 26 31 31 C 1.46206 * 129.14135 * 180.20027 * 30 28 27 32 32 C 1.54850 * 103.44508 * 327.06624 * 16 14 9 33 33 H 0.96996 * 120.00731 * 181.61150 * 1 2 3 34 34 H 1.09002 * 110.62474 * 85.55844 * 12 10 9 35 35 H 1.08998 * 110.62407 * 208.57149 * 12 10 9 36 36 H 1.09005 * 110.63905 * 241.43232 * 13 12 10 37 37 H 1.08999 * 110.49157 * 118.49408 * 13 12 10 38 38 H 0.96992 * 119.99844 * 94.09099 * 18 16 14 39 39 H 1.08998 * 109.49085 * 290.16438 * 23 21 19 40 40 H 1.08996 * 109.49198 * 50.22504 * 23 21 19 41 41 H 1.08998 * 109.74113 * 168.53021 * 24 23 21 42 42 H 1.09006 * 109.73973 * 289.18270 * 24 23 21 43 43 H 0.96704 * 114.00080 * 89.97896 * 29 28 27 44 44 H 1.09004 * 109.59801 * 43.15159 * 31 30 28 45 45 H 1.09001 * 109.60704 * 282.66716 * 31 30 28 46 46 H 1.09004 * 110.62632 * 118.49072 * 32 16 14 47 47 H 1.08998 * 110.62804 * 241.34787 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 1.2124 6 1 3.1041 1.6961 -1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0103 -1.2486 -0.4043 9 7 1.4265 -2.3295 0.5143 10 6 0.2609 -2.4940 1.4477 11 1 -0.2174 -1.5720 1.7781 12 6 0.8949 -3.3767 2.5646 13 6 1.9113 -4.2506 1.8018 14 6 1.7590 -3.7821 0.3233 15 1 2.6002 -3.9946 -0.3365 16 6 0.3818 -4.3453 -0.1402 17 1 0.2614 -4.2272 -1.2171 18 7 0.2451 -5.7532 0.2413 19 6 0.7306 -6.7195 -0.5631 20 8 1.2802 -6.4236 -1.6029 21 6 0.5894 -8.1677 -0.1709 22 1 1.0962 -8.3374 0.7791 23 6 1.2197 -9.0518 -1.2504 24 6 1.2967 -10.4983 -0.7431 25 6 -0.0536 -10.8712 -0.1852 26 7 -0.5221 -12.0488 0.0860 27 7 -1.7214 -11.9461 0.5463 28 6 -2.0772 -10.6823 0.5913 29 8 -3.2665 -10.1927 1.0185 30 7 -1.0271 -9.9624 0.1293 31 6 -0.8970 -8.5143 -0.0241 32 6 -0.6411 -3.4680 0.6226 33 1 -0.4851 -0.8396 0.0236 34 1 1.4032 -2.7559 3.3025 35 1 0.1358 -3.9971 3.0410 36 1 1.6586 -5.3065 1.8981 37 1 2.9226 -4.0622 2.1621 38 1 -0.1948 -5.9898 1.0728 39 1 0.6093 -9.0151 -2.1527 40 1 2.2235 -8.6915 -1.4753 41 1 1.5512 -11.1645 -1.5674 42 1 2.0527 -10.5745 0.0385 43 1 -3.2918 -9.9901 1.9638 44 1 -1.3038 -8.0154 0.8556 45 1 -1.4377 -8.1907 -0.9135 46 1 -1.2689 -2.9148 -0.0760 47 1 -1.2532 -4.0800 1.2852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095642508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:39 Heat of formation + Delta-G solvation = 55.393282 kcal Electronic energy + Delta-G solvation = -31425.671274 eV Core-core repulsion = 27225.686184 eV Total energy + Delta-G solvation = -4199.985090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.61958 -40.58205 -39.12311 -38.13669 -37.03494 -34.39387 -33.67521 -32.70494 -31.52937 -29.62108 -29.16666 -29.10644 -27.69262 -25.49636 -24.22138 -23.59311 -22.72185 -21.78371 -21.16474 -20.01890 -19.76798 -19.35683 -18.86206 -17.91055 -17.53028 -17.10402 -16.46558 -16.03633 -15.77733 -15.31923 -14.89273 -14.82255 -14.73400 -14.49130 -14.18712 -13.79584 -13.75498 -13.10351 -12.98231 -12.69147 -12.63631 -12.23949 -12.11844 -12.00571 -11.85916 -11.70347 -11.48647 -11.44581 -11.21167 -10.84537 -10.70188 -10.61134 -10.59898 -10.39987 -10.20832 -10.08154 -9.89159 -9.71651 -9.52267 -9.39441 -8.87649 -8.56019 -7.08271 -6.28231 -3.24634 1.18454 1.64389 2.33488 2.43544 2.98256 3.30003 3.43392 3.46525 3.64299 3.68487 3.88119 4.00050 4.14235 4.43963 4.51253 4.56192 4.70370 4.79656 4.87623 4.95898 5.07938 5.18472 5.21571 5.23463 5.40270 5.46043 5.50913 5.54830 5.59322 5.63212 5.69866 5.74070 5.79256 5.92116 5.98059 6.07828 6.19424 6.27862 6.36314 6.52650 6.57531 6.66664 6.87143 6.87938 6.99251 7.44604 7.48694 8.11954 8.26314 8.31737 8.83475 9.66780 10.34419 11.14374 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.002445 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.417030 B =11449.484517 C =11963.146778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.027 4.027 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.326 4.326 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.142 3.858 11 H 0.106 0.894 12 C -0.132 4.132 13 C -0.128 4.128 14 C 0.130 3.870 15 H 0.088 0.912 16 C 0.126 3.874 17 H 0.085 0.915 18 N -0.710 5.710 19 C 0.517 3.483 20 O -0.525 6.525 21 C -0.123 4.123 22 H 0.111 0.889 23 C -0.108 4.108 24 C -0.034 4.034 25 C 0.194 3.806 26 N -0.276 5.276 27 N -0.288 5.288 28 C 0.352 3.648 29 O -0.435 6.435 30 N -0.481 5.481 31 C 0.117 3.883 32 C -0.137 4.137 33 H 0.269 0.731 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.393 0.607 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.407 0.593 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -18.012 4.800 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.228 4.228 3 Si 0.903 3.097 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.453 4.453 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.035 3.965 11 H 0.124 0.876 12 C -0.171 4.171 13 C -0.167 4.167 14 C 0.021 3.979 15 H 0.106 0.894 16 C 0.020 3.980 17 H 0.104 0.896 18 N -0.361 5.361 19 C 0.301 3.699 20 O -0.400 6.400 21 C -0.145 4.145 22 H 0.129 0.871 23 C -0.147 4.147 24 C -0.073 4.073 25 C -0.073 4.073 26 N -0.117 5.117 27 N -0.138 5.138 28 C 0.048 3.952 29 O -0.234 6.234 30 N -0.185 5.185 31 C -0.007 4.007 32 C -0.177 4.177 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.227 0.773 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.264 0.736 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.743 -17.371 3.533 17.812 hybrid contribution -0.198 -0.236 0.920 0.970 sum -1.941 -17.606 4.453 18.264 Atomic orbital electron populations 1.70820 1.06411 1.30391 1.48486 1.25856 0.96592 1.01134 0.99242 0.83361 0.74635 0.75465 0.76227 1.21018 1.22073 1.21925 1.19723 0.98190 0.86495 1.40922 0.91547 1.46529 1.35426 0.99502 1.49845 1.23058 0.88997 0.95196 0.89289 0.87577 1.22830 0.97956 0.98189 0.98174 1.22787 0.98989 0.97366 0.97567 1.23231 0.94538 0.86061 0.94062 0.89351 1.22710 0.98486 0.77022 0.99732 0.89649 1.46325 1.58897 1.07193 1.23670 1.19956 0.79413 0.86227 0.84346 1.90761 1.42146 1.83117 1.23993 1.21735 0.95160 0.94584 1.03036 0.87136 1.21572 1.04129 0.91701 0.97253 1.20358 0.87932 0.97169 1.01844 1.24738 0.93995 0.85457 1.03116 1.74037 1.02657 1.19371 1.15642 1.74867 1.06834 1.12512 1.19633 1.21833 0.84027 0.86899 1.02477 1.84935 1.23430 1.83665 1.31391 1.46624 1.13171 1.09131 1.49549 1.21929 0.97385 0.76491 1.04846 1.23303 0.96997 0.97968 0.99389 0.91898 0.92414 0.93162 0.92942 0.92692 0.77281 0.90179 0.88002 0.87328 0.88043 0.73575 0.88181 0.88288 0.91048 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 12.90 55.49 0.72 -25.70 16 2 C -0.03 -0.73 5.29 -17.43 -0.09 -0.83 16 3 Si 1.07 24.64 29.99 -169.99 -5.10 19.54 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.33 -8.82 10.39 -15.05 -0.16 -8.97 16 8 H 0.07 1.82 7.95 -52.49 -0.42 1.40 16 9 N -0.59 -13.83 2.81 -145.54 -0.41 -14.23 16 10 C 0.14 2.84 3.85 -62.55 -0.24 2.60 16 11 H 0.11 2.43 6.78 -51.93 -0.35 2.07 16 12 C -0.13 -2.15 6.41 -24.57 -0.16 -2.31 16 13 C -0.13 -2.02 6.29 -24.58 -0.15 -2.17 16 14 C 0.13 2.48 5.35 -62.80 -0.34 2.15 16 15 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 16 C 0.13 2.07 3.07 -65.44 -0.20 1.87 16 17 H 0.09 1.66 7.70 -51.93 -0.40 1.26 16 18 N -0.71 -8.05 3.55 -51.40 -0.18 -8.24 16 19 C 0.52 5.91 7.13 -10.98 -0.08 5.83 16 20 O -0.52 -8.37 15.54 5.56 0.09 -8.28 16 21 C -0.12 -0.91 2.53 -91.54 -0.23 -1.14 16 22 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 23 C -0.11 -0.80 4.68 -26.43 -0.12 -0.92 16 24 C -0.03 -0.22 6.34 -27.59 -0.17 -0.39 16 25 C 0.19 1.89 7.78 -154.45 -1.20 0.69 16 26 N -0.28 -3.51 12.17 32.93 0.40 -3.11 16 27 N -0.29 -3.80 12.24 29.53 0.36 -3.44 16 28 C 0.35 3.66 9.30 -89.29 -0.83 2.83 16 29 O -0.43 -3.36 13.64 -18.27 -0.25 -3.61 16 30 N -0.48 -4.29 3.16 -115.38 -0.36 -4.65 16 31 C 0.12 0.79 6.16 -4.03 -0.02 0.77 16 32 C -0.14 -2.28 6.07 -23.98 -0.15 -2.42 16 33 H 0.27 7.52 5.57 -40.82 -0.23 7.29 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.66 7.83 -51.93 -0.41 0.25 16 36 H 0.05 0.67 6.49 -51.93 -0.34 0.33 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 3.27 7.66 -40.82 -0.31 2.96 16 39 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 40 H 0.10 0.79 7.77 -51.93 -0.40 0.39 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.41 0.92 9.06 45.56 0.41 1.33 16 44 H 0.10 0.45 7.86 -51.93 -0.41 0.04 16 45 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.07 1.33 7.65 -51.93 -0.40 0.94 16 47 H 0.06 0.76 7.37 -51.93 -0.38 0.37 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -35.70 372.72 -9.08 -44.77 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.81 Total: 3.75 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -4.15 Total: -2.42 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.52 Total: -59.37 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.16 Total: -11.89 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.70 -9.08 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095642508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.167 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds