Wall clock time and date at job start Wed Apr 1 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00749 * 2 1 4 4 H 1.48506 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47622 * 119.99758 * 3 2 1 6 6 H 1.48504 * 109.47107 * 240.00240 * 3 2 1 7 7 C 1.38816 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 154.34838 * 7 2 1 9 9 N 1.36943 * 119.99736 * 334.35752 * 7 2 1 10 10 C 1.50232 * 130.83799 * 341.06467 * 9 7 2 11 11 H 1.08995 * 115.85964 * 0.39532 * 10 9 7 12 12 C 1.55850 * 101.04829 * 234.00633 * 10 9 7 13 13 C 1.54222 * 103.56386 * 327.15021 * 12 10 9 14 14 C 1.50241 * 130.83467 * 161.40761 * 9 7 2 15 15 H 1.09001 * 115.86172 * 359.60880 * 14 9 7 16 16 C 1.55844 * 101.04931 * 233.92553 * 14 9 7 17 17 H 1.09003 * 110.62285 * 85.55674 * 16 14 9 18 18 N 1.46497 * 110.62854 * 208.41490 * 16 14 9 19 19 C 1.34782 * 119.99960 * 274.09518 * 18 16 14 20 20 O 1.21280 * 119.99765 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99724 * 180.02562 * 19 18 16 22 22 H 1.08997 * 109.44168 * 299.92970 * 21 19 18 23 23 C 1.53116 * 109.43948 * 179.97438 * 21 19 18 24 24 C 1.53474 * 109.37610 * 170.19686 * 23 21 19 25 25 C 1.50794 * 108.08781 * 48.88010 * 24 23 21 26 26 N 1.29601 * 128.74344 * 164.09523 * 25 24 23 27 27 N 1.28872 * 109.80103 * 180.13764 * 26 25 24 28 28 C 1.31376 * 109.92882 * 359.95687 * 27 26 25 29 29 O 1.35526 * 126.57995 * 179.97438 * 28 27 26 30 30 N 1.35432 * 106.84068 * 359.95396 * 28 27 26 31 31 C 1.46206 * 129.14135 * 180.20027 * 30 28 27 32 32 C 1.54850 * 103.44508 * 327.06624 * 16 14 9 33 33 H 0.96996 * 120.00731 * 181.61150 * 1 2 3 34 34 H 1.09002 * 110.62474 * 85.55844 * 12 10 9 35 35 H 1.08998 * 110.62407 * 208.57149 * 12 10 9 36 36 H 1.09005 * 110.63905 * 241.43232 * 13 12 10 37 37 H 1.08999 * 110.49157 * 118.49408 * 13 12 10 38 38 H 0.96992 * 119.99844 * 94.09099 * 18 16 14 39 39 H 1.08998 * 109.49085 * 290.16438 * 23 21 19 40 40 H 1.08996 * 109.49198 * 50.22504 * 23 21 19 41 41 H 1.08998 * 109.74113 * 168.53021 * 24 23 21 42 42 H 1.09006 * 109.73973 * 289.18270 * 24 23 21 43 43 H 0.96704 * 114.00080 * 89.97896 * 29 28 27 44 44 H 1.09004 * 109.59801 * 43.15159 * 31 30 28 45 45 H 1.09001 * 109.60704 * 282.66716 * 31 30 28 46 46 H 1.09004 * 110.62632 * 118.49072 * 32 16 14 47 47 H 1.08998 * 110.62804 * 241.34787 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 1.2124 6 1 3.1041 1.6961 -1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0103 -1.2486 -0.4043 9 7 1.4265 -2.3295 0.5143 10 6 0.2609 -2.4940 1.4477 11 1 -0.2174 -1.5720 1.7781 12 6 0.8949 -3.3767 2.5646 13 6 1.9113 -4.2506 1.8018 14 6 1.7590 -3.7821 0.3233 15 1 2.6002 -3.9946 -0.3365 16 6 0.3818 -4.3453 -0.1402 17 1 0.2614 -4.2272 -1.2171 18 7 0.2451 -5.7532 0.2413 19 6 0.7306 -6.7195 -0.5631 20 8 1.2802 -6.4236 -1.6029 21 6 0.5894 -8.1677 -0.1709 22 1 1.0962 -8.3374 0.7791 23 6 1.2197 -9.0518 -1.2504 24 6 1.2967 -10.4983 -0.7431 25 6 -0.0536 -10.8712 -0.1852 26 7 -0.5221 -12.0488 0.0860 27 7 -1.7214 -11.9461 0.5463 28 6 -2.0772 -10.6823 0.5913 29 8 -3.2665 -10.1927 1.0185 30 7 -1.0271 -9.9624 0.1293 31 6 -0.8970 -8.5143 -0.0241 32 6 -0.6411 -3.4680 0.6226 33 1 -0.4851 -0.8396 0.0236 34 1 1.4032 -2.7559 3.3025 35 1 0.1358 -3.9971 3.0410 36 1 1.6586 -5.3065 1.8981 37 1 2.9226 -4.0622 2.1621 38 1 -0.1948 -5.9898 1.0728 39 1 0.6093 -9.0151 -2.1527 40 1 2.2235 -8.6915 -1.4753 41 1 1.5512 -11.1645 -1.5674 42 1 2.0527 -10.5745 0.0385 43 1 -3.2918 -9.9901 1.9638 44 1 -1.3038 -8.0154 0.8556 45 1 -1.4377 -8.1907 -0.9135 46 1 -1.2689 -2.9148 -0.0760 47 1 -1.2532 -4.0800 1.2852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095642508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:38 Heat of formation + Delta-G solvation = 27.847016 kcal Electronic energy + Delta-G solvation = -31426.865770 eV Core-core repulsion = 27225.686184 eV Total energy + Delta-G solvation = -4201.179586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.33674 -41.75857 -40.32758 -38.73379 -37.83183 -35.71196 -34.47849 -34.29983 -32.31621 -30.89388 -30.87007 -29.94334 -29.04970 -26.31010 -25.81195 -24.45445 -23.42149 -23.01120 -22.23180 -21.44055 -20.68239 -20.23684 -19.94652 -19.54845 -18.47996 -17.98306 -17.20727 -17.00486 -16.76560 -16.54573 -16.22338 -15.62832 -15.51476 -15.49109 -15.30642 -15.20688 -14.92804 -14.53552 -14.04830 -13.57064 -13.53697 -13.46388 -13.23337 -12.98192 -12.92028 -12.79954 -12.62891 -12.52745 -12.39485 -12.28026 -12.07174 -11.95251 -11.84291 -11.64236 -11.43193 -11.31948 -11.24657 -11.01963 -10.94744 -10.56264 -10.13404 -10.08525 -8.94542 -8.40651 -5.30066 0.53886 0.97381 1.51189 1.55548 1.61245 1.62962 1.81594 2.01478 2.60668 2.68902 3.09087 3.18419 3.23997 3.35164 3.44584 3.52681 3.76831 3.89880 3.92923 4.00326 4.05145 4.08006 4.24811 4.28265 4.32572 4.38610 4.46107 4.55999 4.58243 4.63333 4.65107 4.82363 4.85336 4.92361 4.96110 4.99056 5.00580 5.06832 5.13805 5.26072 5.32875 5.46728 5.53837 5.59946 5.65609 6.30047 6.42537 6.52433 6.83987 7.22197 7.51634 7.65370 8.42834 9.05398 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.002445 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.417030 B =11449.484517 C =11963.146778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.078 4.078 3 Si 1.118 2.882 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.333 4.333 8 H 0.049 0.951 9 N -0.626 5.626 10 C 0.128 3.872 11 H 0.070 0.930 12 C -0.119 4.119 13 C -0.112 4.112 14 C 0.117 3.883 15 H 0.062 0.938 16 C 0.148 3.852 17 H 0.046 0.954 18 N -0.694 5.694 19 C 0.522 3.478 20 O -0.573 6.573 21 C -0.107 4.107 22 H 0.143 0.857 23 C -0.106 4.106 24 C -0.025 4.025 25 C 0.198 3.802 26 N -0.313 5.313 27 N -0.333 5.333 28 C 0.361 3.639 29 O -0.438 6.438 30 N -0.477 5.477 31 C 0.116 3.884 32 C -0.122 4.122 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.416 0.584 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.431 0.569 44 H 0.135 0.865 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -19.840 7.046 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.274 4.274 3 Si 0.943 3.057 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.461 4.461 8 H 0.067 0.933 9 N -0.349 5.349 10 C 0.022 3.978 11 H 0.088 0.912 12 C -0.158 4.158 13 C -0.151 4.151 14 C 0.010 3.990 15 H 0.080 0.920 16 C 0.041 3.959 17 H 0.065 0.935 18 N -0.347 5.347 19 C 0.308 3.692 20 O -0.451 6.451 21 C -0.129 4.129 22 H 0.161 0.839 23 C -0.145 4.145 24 C -0.065 4.065 25 C -0.070 4.070 26 N -0.154 5.154 27 N -0.183 5.183 28 C 0.055 3.945 29 O -0.241 6.241 30 N -0.181 5.181 31 C -0.006 4.006 32 C -0.162 4.162 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.293 0.707 44 H 0.153 0.847 45 H 0.110 0.890 46 H 0.061 0.939 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.955 -19.265 5.841 20.226 hybrid contribution -0.139 0.285 0.163 0.357 sum -2.094 -18.980 6.004 20.017 Atomic orbital electron populations 1.70893 1.07147 1.30110 1.51186 1.27045 0.96779 1.04065 0.99502 0.82769 0.73753 0.72083 0.77062 1.21588 1.20710 1.20701 1.19877 0.97683 0.88468 1.40113 0.93266 1.46771 1.36609 1.00340 1.51223 1.23155 0.88635 0.95287 0.90734 0.91227 1.22769 0.98719 0.97797 0.96503 1.22694 0.98649 0.99618 0.94106 1.23368 0.95048 0.84336 0.96276 0.91997 1.22003 0.96603 0.79864 0.97465 0.93544 1.45972 1.59113 1.04839 1.24763 1.20601 0.77776 0.87642 0.83230 1.90766 1.44086 1.84071 1.26157 1.21639 0.96151 0.90836 1.04258 0.83911 1.21526 1.03692 0.92371 0.96864 1.20474 0.86880 0.96326 1.02778 1.25258 0.94881 0.84993 1.01892 1.73945 1.03051 1.21102 1.17279 1.74757 1.07589 1.14389 1.21596 1.21838 0.84525 0.86586 1.01574 1.84905 1.22218 1.83333 1.33641 1.46655 1.12584 1.09657 1.49165 1.22091 0.96757 0.75517 1.06281 1.23149 0.96472 0.97488 0.99057 0.92627 0.93744 0.88197 0.88501 0.93616 0.74530 0.91709 0.88296 0.86457 0.85616 0.70723 0.84678 0.89041 0.93948 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.60 12.90 21.65 0.28 -56.32 16 2 C -0.08 -4.41 5.29 84.86 0.45 -3.96 16 3 Si 1.12 51.08 29.99 68.60 2.06 53.13 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.33 -18.73 10.39 84.03 0.87 -17.85 16 8 H 0.05 2.84 7.95 -2.91 -0.02 2.81 16 9 N -0.63 -29.97 2.81 -614.39 -1.73 -31.69 16 10 C 0.13 5.08 3.85 46.40 0.18 5.26 16 11 H 0.07 3.27 6.78 -2.39 -0.02 3.25 16 12 C -0.12 -3.47 6.41 31.99 0.21 -3.27 16 13 C -0.11 -3.17 6.29 31.99 0.20 -2.97 16 14 C 0.12 4.46 5.35 46.23 0.25 4.70 16 15 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 16 C 0.15 4.69 3.07 46.61 0.14 4.83 16 17 H 0.05 1.85 7.70 -2.39 -0.02 1.84 16 18 N -0.69 -13.08 3.55 -434.91 -1.54 -14.62 16 19 C 0.52 10.39 7.13 87.66 0.63 11.02 16 20 O -0.57 -17.82 15.54 -3.03 -0.05 -17.87 16 21 C -0.11 -1.14 2.53 -11.39 -0.03 -1.17 16 22 H 0.14 0.75 8.12 -2.39 -0.02 0.73 16 23 C -0.11 -1.29 4.68 30.79 0.14 -1.15 16 24 C -0.03 -0.25 6.34 30.04 0.19 -0.06 16 25 C 0.20 3.36 7.78 137.84 1.07 4.43 16 26 N -0.31 -7.57 12.17 -49.73 -0.61 -8.17 16 27 N -0.33 -8.39 12.24 -173.87 -2.13 -10.52 16 28 C 0.36 6.60 9.30 179.88 1.67 8.27 16 29 O -0.44 -5.41 13.64 -88.30 -1.20 -6.61 16 30 N -0.48 -6.95 3.16 -630.23 -1.99 -8.94 16 31 C 0.12 1.08 6.16 86.55 0.53 1.61 16 32 C -0.12 -3.87 6.07 32.37 0.20 -3.67 16 33 H 0.26 15.36 5.57 -92.71 -0.52 14.84 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.97 7.83 -2.39 -0.02 1.95 16 36 H 0.10 1.89 6.49 -2.38 -0.02 1.87 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 4.22 7.66 -92.71 -0.71 3.51 16 39 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 40 H 0.10 1.33 7.77 -2.39 -0.02 1.31 16 41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.43 0.32 9.06 -74.05 -0.67 -0.35 16 44 H 0.14 0.35 7.86 -2.38 -0.02 0.33 16 45 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.04 1.59 7.65 -2.38 -0.02 1.58 16 47 H 0.11 2.30 7.37 -2.39 -0.02 2.28 16 Total: -1.00 -85.71 372.72 -0.30 -86.01 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -0.10 Total: 9.58 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.70 Total: 6.02 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.71 Total: -130.27 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.25 Total: -24.48 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.06 Total: 53.13 kcal Total: -85.71 -0.30 -86.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095642508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.861 kcal (2) G-P(sol) polarization free energy of solvation -85.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds