Wall clock time and date at job start Wed Apr 1 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48493 * 109.47017 * 274.98396 * 3 2 1 5 5 H 1.48506 * 109.46940 * 34.98306 * 3 2 1 6 6 H 1.48500 * 109.46993 * 154.98508 * 3 2 1 7 7 C 1.38814 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99175 * 185.06601 * 7 2 1 9 9 N 1.36935 * 120.00351 * 5.06735 * 7 2 1 10 10 C 1.47582 * 134.49013 * 173.48107 * 9 7 2 11 11 C 1.53940 * 86.11368 * 155.35904 * 10 9 7 12 12 N 1.46508 * 113.74218 * 137.95069 * 11 10 9 13 13 C 1.46764 * 124.34835 * 121.92298 * 12 11 10 14 14 C 1.54479 * 105.47431 * 162.96260 * 13 12 11 15 15 H 1.08998 * 110.97183 * 143.53155 * 14 13 12 16 16 N 1.46504 * 110.96918 * 267.29970 * 14 13 12 17 17 C 1.34783 * 119.99651 * 204.99799 * 16 14 13 18 18 O 1.21283 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.50693 * 119.99663 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.46969 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47382 * 179.97438 * 20 19 17 22 22 C 1.39872 * 126.04014 * 269.69106 * 21 20 19 23 23 N 1.30834 * 108.20129 * 179.81347 * 22 21 20 24 24 N 1.40078 * 108.20563 * 0.43983 * 23 22 21 25 25 H 0.97001 * 126.04119 * 179.73926 * 24 23 22 26 26 C 1.34949 * 107.92603 * 359.71784 * 24 23 22 27 27 C 1.54632 * 101.76353 * 25.41549 * 14 13 12 28 28 C 1.34420 * 124.34920 * 301.89710 * 12 11 10 29 29 O 1.21279 * 124.94132 * 0.46649 * 28 12 11 30 30 C 1.47812 * 134.45806 * 353.34946 * 9 7 2 31 31 H 0.97001 * 120.00035 * 0.02562 * 1 2 3 32 32 H 1.08994 * 113.77118 * 41.05967 * 10 9 7 33 33 H 1.09008 * 113.76668 * 269.65703 * 10 9 7 34 34 H 1.09004 * 113.74653 * 269.15041 * 11 10 9 35 35 H 1.09003 * 110.24432 * 43.96490 * 13 12 11 36 36 H 1.08996 * 110.31938 * 282.00306 * 13 12 11 37 37 H 0.96994 * 120.00442 * 24.99759 * 16 14 13 38 38 H 1.09002 * 109.47313 * 299.99600 * 19 17 16 39 39 H 1.08998 * 109.47424 * 60.00125 * 19 17 16 40 40 H 1.09002 * 109.46609 * 299.99826 * 20 19 17 41 41 H 1.08998 * 109.47113 * 59.99729 * 20 19 17 42 42 H 1.08007 * 125.89414 * 359.97438 * 22 21 20 43 43 H 1.07999 * 126.12372 * 179.97438 * 26 24 23 44 44 H 1.08997 * 110.48652 * 93.88020 * 27 14 13 45 45 H 1.09001 * 110.48760 * 216.52718 * 27 14 13 46 46 H 1.09001 * 113.77063 * 90.37103 * 30 9 7 47 47 H 1.09003 * 113.82912 * 318.91460 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5042 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7287 -3.7986 -0.2550 11 6 0.3711 -4.1417 0.3843 12 7 -0.3174 -5.2634 -0.2593 13 6 -0.7241 -6.4922 0.4325 14 6 -1.7639 -7.1615 -0.4934 15 1 -1.6662 -8.2468 -0.4694 16 7 -3.1244 -6.7516 -0.1365 17 6 -4.1691 -7.5480 -0.4382 18 8 -3.9829 -8.6037 -1.0054 19 6 -5.5686 -7.1261 -0.0717 20 6 -6.5598 -8.2009 -0.5224 21 6 -7.9593 -7.7794 -0.1554 22 6 -8.6194 -8.0718 1.0427 23 7 -9.8114 -7.5348 0.9941 24 7 -9.9516 -6.8914 -0.2422 25 1 -10.7364 -6.4118 -0.5504 26 6 -8.8015 -7.0560 -0.9289 27 6 -1.3617 -6.6001 -1.8769 28 6 -0.6581 -5.2991 -1.5591 29 8 -0.4334 -4.4171 -2.3605 30 6 -0.1001 -2.7611 -0.1073 31 1 -0.4850 0.8400 -0.0004 32 1 2.5859 -4.0808 0.3561 33 1 1.8197 -4.1207 -1.2924 34 1 0.4075 -4.2320 1.4700 35 1 -1.1757 -6.2514 1.3949 36 1 0.1341 -7.1492 0.5730 37 1 -3.2734 -5.9071 0.3167 38 1 -5.6384 -6.9981 1.0085 39 1 -5.8050 -6.1835 -0.5653 40 1 -6.4901 -8.3294 -1.6026 41 1 -6.3233 -9.1433 -0.0284 42 1 -8.2138 -8.6402 1.8667 43 1 -8.5913 -6.6785 -1.9186 44 1 -0.6840 -7.2862 -2.3847 45 1 -2.2468 -6.4161 -2.4859 46 1 -0.5475 -2.7776 -1.1011 47 1 -0.7002 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108580997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:37 Heat of formation + Delta-G solvation = 68.856967 kcal Electronic energy + Delta-G solvation = -29691.764991 eV Core-core repulsion = 25492.363730 eV Total energy + Delta-G solvation = -4199.401261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54123 -40.76123 -39.51922 -37.27792 -36.39954 -34.27481 -33.92869 -32.19694 -31.66799 -30.59765 -29.30921 -27.56863 -27.09908 -24.79712 -24.69013 -23.40942 -22.36719 -21.72773 -20.73250 -20.39751 -20.18220 -18.32065 -18.17571 -17.23633 -16.93543 -16.72939 -16.25992 -15.79541 -15.22916 -15.05738 -14.82708 -14.72358 -14.48658 -14.03536 -13.99412 -13.96238 -13.48554 -13.39807 -13.17024 -12.83148 -12.74006 -12.47077 -12.36588 -11.96011 -11.79763 -11.71846 -11.43471 -11.40280 -11.35394 -10.88460 -10.85277 -10.70784 -10.24107 -10.07248 -10.01557 -9.97782 -9.57405 -9.50943 -9.14600 -8.85387 -8.66368 -8.19133 -6.81572 -5.75665 -3.06176 1.52892 2.37200 2.43239 2.54546 2.90132 2.98763 3.25416 3.41347 3.47196 3.47972 4.25511 4.37940 4.43526 4.50558 4.53514 4.57747 4.77462 4.83422 4.90532 5.05347 5.14737 5.22454 5.24115 5.36548 5.36936 5.42633 5.47454 5.52925 5.60754 5.64599 5.73614 5.82010 5.87360 5.93892 6.23496 6.28240 6.28528 6.51646 6.59218 6.87352 6.88058 7.24639 7.26022 7.27635 7.49243 7.56478 7.62316 7.99235 8.00516 8.56655 9.06635 9.72917 10.62835 11.42329 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002051 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.460857 B =13650.785680 C =15114.167620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.609 5.609 13 C 0.094 3.906 14 C 0.133 3.867 15 H 0.116 0.884 16 N -0.723 5.723 17 C 0.517 3.483 18 O -0.541 6.541 19 C -0.137 4.137 20 C -0.024 4.024 21 C -0.237 4.237 22 C 0.056 3.944 23 N -0.298 5.298 24 N -0.479 5.479 25 H 0.439 0.561 26 C 0.062 3.938 27 C -0.167 4.167 28 C 0.511 3.489 29 O -0.510 6.510 30 C 0.157 3.843 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.406 0.594 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.057 0.943 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -19.819 1.928 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.005 4.005 12 N -0.345 5.345 13 C -0.030 4.030 14 C 0.028 3.972 15 H 0.134 0.866 16 N -0.375 5.375 17 C 0.304 3.696 18 O -0.418 6.418 19 C -0.177 4.177 20 C -0.063 4.063 21 C -0.249 4.249 22 C -0.131 4.131 23 N -0.120 5.120 24 N -0.187 5.187 25 H 0.283 0.717 26 C -0.086 4.086 27 C -0.208 4.208 28 C 0.298 3.702 29 O -0.384 6.384 30 C 0.031 3.969 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.200 0.800 43 H 0.194 0.806 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.629 -19.502 1.793 25.692 hybrid contribution 0.823 1.569 -0.468 1.833 sum -15.806 -17.933 1.324 23.941 Atomic orbital electron populations 1.69842 1.05072 1.25315 1.56152 1.24838 0.95698 0.97557 1.02282 0.86116 0.78696 0.83524 0.77545 1.21605 1.21721 1.20539 1.18988 0.90695 0.81838 1.43372 0.90155 1.45690 1.02421 1.00556 1.84471 1.22922 0.94258 0.86767 0.97694 1.24069 0.94305 0.85231 0.96871 1.48540 1.58651 1.17455 1.09831 1.22349 0.97257 0.87104 0.96291 1.21836 0.81292 1.00702 0.93414 0.86574 1.46091 1.05952 1.24025 1.61424 1.20801 0.86938 0.83850 0.78036 1.90708 1.86054 1.23505 1.41507 1.21721 0.90983 1.01250 1.03730 1.19577 0.87296 0.97372 1.02016 1.20151 0.99011 1.09405 0.96309 1.23881 0.91539 0.99203 0.98471 1.77343 1.20081 1.14351 1.00235 1.46328 1.14445 1.44693 1.13201 0.71712 1.22483 0.87119 1.00014 0.98955 1.22829 1.02664 0.96955 0.98401 1.20705 0.79097 0.88156 0.82251 1.90793 1.55164 1.41370 1.51104 1.22715 0.88262 0.86135 0.99797 0.93671 0.94018 0.94225 0.87735 0.89833 0.89821 0.75922 0.88658 0.88768 0.90580 0.90309 0.79979 0.80611 0.87268 0.88125 0.92546 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.84 11.51 55.49 0.64 -27.20 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 8 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 9 N -0.60 -16.13 3.70 -177.91 -0.66 -16.79 16 10 C 0.11 2.38 8.43 -2.97 -0.03 2.36 16 11 C 0.10 1.79 4.81 -70.16 -0.34 1.46 16 12 N -0.61 -8.82 3.16 -166.65 -0.53 -9.35 16 13 C 0.09 0.87 6.97 -3.12 -0.02 0.85 16 14 C 0.13 1.19 3.53 -66.29 -0.23 0.96 16 15 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 16 N -0.72 -5.97 5.12 -52.22 -0.27 -6.24 16 17 C 0.52 4.60 7.83 -10.99 -0.09 4.52 16 18 O -0.54 -6.58 15.62 5.55 0.09 -6.49 16 19 C -0.14 -0.87 5.68 -27.89 -0.16 -1.03 16 20 C -0.02 -0.16 4.99 -27.88 -0.14 -0.30 16 21 C -0.24 -1.66 5.35 -105.05 -0.56 -2.23 16 22 C 0.06 0.43 11.96 -17.37 -0.21 0.23 16 23 N -0.30 -2.73 12.70 30.63 0.39 -2.34 16 24 N -0.48 -3.14 7.36 30.44 0.22 -2.92 16 25 H 0.44 1.59 8.96 -182.61 -1.64 -0.04 16 26 C 0.06 0.37 11.90 -17.22 -0.21 0.17 16 27 C -0.17 -1.90 6.59 -26.74 -0.18 -2.08 16 28 C 0.51 8.33 7.42 -10.86 -0.08 8.25 16 29 O -0.51 -11.17 14.61 5.56 0.08 -11.09 16 30 C 0.16 3.81 6.81 -2.84 -0.02 3.79 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.91 7.22 -51.92 -0.38 0.54 16 34 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.41 2.98 8.66 -40.82 -0.35 2.63 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 46 H 0.06 1.53 5.75 -51.93 -0.30 1.23 16 47 H 0.07 1.70 7.37 -51.93 -0.38 1.32 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -39.15 392.10 -9.70 -48.86 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.05 Total: 0.02 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -2.51 Total: 10.08 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.20 Total: -64.84 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.17 Total: -17.58 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.15 -9.70 -48.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108580997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.714 kcal (2) G-P(sol) polarization free energy of solvation -39.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds