Wall clock time and date at job start Wed Apr 1 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48493 * 109.47017 * 274.98396 * 3 2 1 5 5 H 1.48506 * 109.46940 * 34.98306 * 3 2 1 6 6 H 1.48500 * 109.46993 * 154.98508 * 3 2 1 7 7 C 1.38814 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99175 * 185.06601 * 7 2 1 9 9 N 1.36935 * 120.00351 * 5.06735 * 7 2 1 10 10 C 1.47582 * 134.49013 * 173.48107 * 9 7 2 11 11 C 1.53940 * 86.11368 * 155.35904 * 10 9 7 12 12 N 1.46508 * 113.74218 * 137.95069 * 11 10 9 13 13 C 1.46764 * 124.34835 * 121.92298 * 12 11 10 14 14 C 1.54479 * 105.47431 * 162.96260 * 13 12 11 15 15 H 1.08998 * 110.97183 * 143.53155 * 14 13 12 16 16 N 1.46504 * 110.96918 * 267.29970 * 14 13 12 17 17 C 1.34783 * 119.99651 * 204.99799 * 16 14 13 18 18 O 1.21283 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.50693 * 119.99663 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.46969 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47382 * 179.97438 * 20 19 17 22 22 C 1.39872 * 126.04014 * 269.69106 * 21 20 19 23 23 N 1.30834 * 108.20129 * 179.81347 * 22 21 20 24 24 N 1.40078 * 108.20563 * 0.43983 * 23 22 21 25 25 H 0.97001 * 126.04119 * 179.73926 * 24 23 22 26 26 C 1.34949 * 107.92603 * 359.71784 * 24 23 22 27 27 C 1.54632 * 101.76353 * 25.41549 * 14 13 12 28 28 C 1.34420 * 124.34920 * 301.89710 * 12 11 10 29 29 O 1.21279 * 124.94132 * 0.46649 * 28 12 11 30 30 C 1.47812 * 134.45806 * 353.34946 * 9 7 2 31 31 H 0.97001 * 120.00035 * 0.02562 * 1 2 3 32 32 H 1.08994 * 113.77118 * 41.05967 * 10 9 7 33 33 H 1.09008 * 113.76668 * 269.65703 * 10 9 7 34 34 H 1.09004 * 113.74653 * 269.15041 * 11 10 9 35 35 H 1.09003 * 110.24432 * 43.96490 * 13 12 11 36 36 H 1.08996 * 110.31938 * 282.00306 * 13 12 11 37 37 H 0.96994 * 120.00442 * 24.99759 * 16 14 13 38 38 H 1.09002 * 109.47313 * 299.99600 * 19 17 16 39 39 H 1.08998 * 109.47424 * 60.00125 * 19 17 16 40 40 H 1.09002 * 109.46609 * 299.99826 * 20 19 17 41 41 H 1.08998 * 109.47113 * 59.99729 * 20 19 17 42 42 H 1.08007 * 125.89414 * 359.97438 * 22 21 20 43 43 H 1.07999 * 126.12372 * 179.97438 * 26 24 23 44 44 H 1.08997 * 110.48652 * 93.88020 * 27 14 13 45 45 H 1.09001 * 110.48760 * 216.52718 * 27 14 13 46 46 H 1.09001 * 113.77063 * 90.37103 * 30 9 7 47 47 H 1.09003 * 113.82912 * 318.91460 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5042 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7287 -3.7986 -0.2550 11 6 0.3711 -4.1417 0.3843 12 7 -0.3174 -5.2634 -0.2593 13 6 -0.7241 -6.4922 0.4325 14 6 -1.7639 -7.1615 -0.4934 15 1 -1.6662 -8.2468 -0.4694 16 7 -3.1244 -6.7516 -0.1365 17 6 -4.1691 -7.5480 -0.4382 18 8 -3.9829 -8.6037 -1.0054 19 6 -5.5686 -7.1261 -0.0717 20 6 -6.5598 -8.2009 -0.5224 21 6 -7.9593 -7.7794 -0.1554 22 6 -8.6194 -8.0718 1.0427 23 7 -9.8114 -7.5348 0.9941 24 7 -9.9516 -6.8914 -0.2422 25 1 -10.7364 -6.4118 -0.5504 26 6 -8.8015 -7.0560 -0.9289 27 6 -1.3617 -6.6001 -1.8769 28 6 -0.6581 -5.2991 -1.5591 29 8 -0.4334 -4.4171 -2.3605 30 6 -0.1001 -2.7611 -0.1073 31 1 -0.4850 0.8400 -0.0004 32 1 2.5859 -4.0808 0.3561 33 1 1.8197 -4.1207 -1.2924 34 1 0.4075 -4.2320 1.4700 35 1 -1.1757 -6.2514 1.3949 36 1 0.1341 -7.1492 0.5730 37 1 -3.2734 -5.9071 0.3167 38 1 -5.6384 -6.9981 1.0085 39 1 -5.8050 -6.1835 -0.5653 40 1 -6.4901 -8.3294 -1.6026 41 1 -6.3233 -9.1433 -0.0284 42 1 -8.2138 -8.6402 1.8667 43 1 -8.5913 -6.6785 -1.9186 44 1 -0.6840 -7.2862 -2.3847 45 1 -2.2468 -6.4161 -2.4859 46 1 -0.5475 -2.7776 -1.1011 47 1 -0.7002 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108580997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:36 Heat of formation + Delta-G solvation = 38.762996 kcal Electronic energy + Delta-G solvation = -29693.069964 eV Core-core repulsion = 25492.363730 eV Total energy + Delta-G solvation = -4200.706234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06171 -41.86022 -40.45258 -38.91301 -37.59259 -35.06021 -34.83064 -34.08540 -32.21673 -31.74247 -29.99302 -29.14063 -28.27951 -26.60725 -25.47810 -25.04774 -22.91044 -22.55928 -22.05882 -21.37916 -20.73549 -19.70630 -18.77325 -18.70376 -17.99434 -17.76894 -17.55602 -16.96555 -16.44612 -16.19927 -15.94768 -15.62275 -15.38382 -15.31981 -15.09446 -14.80732 -14.72475 -14.39870 -14.18667 -13.95124 -13.66518 -13.44007 -13.33946 -13.27162 -13.16209 -12.90773 -12.82492 -12.68680 -12.64314 -12.39034 -12.03973 -11.95869 -11.85671 -11.50793 -11.42323 -11.04708 -10.81604 -10.60092 -10.56254 -10.03583 -9.53467 -9.36270 -8.92355 -7.94750 -5.27468 1.03567 1.42418 1.46166 1.54558 1.64497 1.75048 1.84110 2.02653 2.12572 2.31743 2.48328 3.23972 3.40151 3.48614 3.54308 3.81594 3.82517 3.92226 4.03650 4.13107 4.26755 4.29282 4.34831 4.41266 4.55265 4.65393 4.67668 4.73899 4.77326 4.79708 4.84714 4.89912 4.94822 4.96675 4.99767 5.19803 5.26863 5.35225 5.42887 5.48107 5.54943 5.77676 5.86854 5.90924 6.30847 6.49090 6.59963 6.77162 6.88335 7.29223 7.33070 7.57007 8.53508 9.23302 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002051 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.460857 B =13650.785680 C =15114.167620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.636 5.636 10 C 0.110 3.890 11 C 0.138 3.862 12 N -0.606 5.606 13 C 0.095 3.905 14 C 0.145 3.855 15 H 0.135 0.865 16 N -0.719 5.719 17 C 0.519 3.481 18 O -0.573 6.573 19 C -0.130 4.130 20 C -0.015 4.015 21 C -0.250 4.250 22 C 0.049 3.951 23 N -0.338 5.338 24 N -0.477 5.477 25 H 0.449 0.551 26 C 0.067 3.933 27 C -0.155 4.155 28 C 0.501 3.499 29 O -0.577 6.577 30 C 0.154 3.846 31 H 0.249 0.751 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.199 0.801 43 H 0.204 0.796 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.021 0.979 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.469 -21.451 3.240 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.363 5.363 10 C -0.016 4.016 11 C 0.034 3.966 12 N -0.339 5.339 13 C -0.027 4.027 14 C 0.039 3.961 15 H 0.152 0.848 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.453 6.453 19 C -0.170 4.170 20 C -0.054 4.054 21 C -0.262 4.262 22 C -0.137 4.137 23 N -0.161 5.161 24 N -0.186 5.186 25 H 0.295 0.705 26 C -0.081 4.081 27 C -0.196 4.196 28 C 0.290 3.710 29 O -0.457 6.457 30 C 0.028 3.972 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.248 0.752 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.215 0.785 43 H 0.221 0.779 44 H 0.147 0.853 45 H 0.113 0.887 46 H 0.039 0.961 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.235 -21.196 3.152 26.884 hybrid contribution 0.682 2.017 -0.945 2.329 sum -15.553 -19.179 2.206 24.792 Atomic orbital electron populations 1.70039 1.06609 1.25675 1.57623 1.25743 0.96647 1.01120 1.02648 0.85028 0.78129 0.78912 0.77087 1.22035 1.21610 1.18617 1.19429 0.91324 0.83283 1.42513 0.89635 1.46130 1.03695 1.01912 1.84548 1.23017 0.97028 0.84169 0.97362 1.23362 0.91459 0.83731 0.98061 1.48484 1.57568 1.18129 1.09739 1.22711 0.98561 0.84836 0.96559 1.21824 0.81470 1.01397 0.91442 0.84785 1.46115 1.05764 1.24180 1.61066 1.21168 0.87736 0.83222 0.77133 1.90699 1.86561 1.24960 1.43046 1.21717 0.89216 1.01276 1.04794 1.19456 0.87322 0.97235 1.01410 1.20234 0.99290 1.10191 0.96440 1.24240 0.91278 0.98954 0.99263 1.77286 1.21096 1.15868 1.01803 1.46387 1.15137 1.44417 1.12642 0.70489 1.22967 0.86501 0.98961 0.99696 1.22795 1.02164 0.94436 1.00202 1.21584 0.78441 0.88848 0.82143 1.90762 1.57761 1.44082 1.53061 1.22509 0.87157 0.90067 0.97514 0.94245 0.91442 0.96076 0.84432 0.87352 0.86790 0.75246 0.87047 0.87920 0.91316 0.90917 0.78459 0.77907 0.85333 0.88750 0.96077 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 11.51 21.65 0.25 -59.34 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.24 -13.89 10.70 84.03 0.90 -12.99 16 8 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.64 -34.46 3.70 -716.79 -2.65 -37.11 16 10 C 0.11 4.68 8.43 86.48 0.73 5.41 16 11 C 0.14 4.85 4.81 46.75 0.22 5.08 16 12 N -0.61 -16.32 3.16 -799.75 -2.52 -18.84 16 13 C 0.10 1.35 6.97 86.83 0.61 1.96 16 14 C 0.14 2.09 3.53 46.05 0.16 2.25 16 15 H 0.13 1.65 7.54 -2.39 -0.02 1.64 16 16 N -0.72 -9.90 5.12 -437.52 -2.24 -12.14 16 17 C 0.52 8.07 7.83 87.65 0.69 8.75 16 18 O -0.57 -12.81 15.62 -3.04 -0.05 -12.86 16 19 C -0.13 -1.38 5.68 29.85 0.17 -1.21 16 20 C -0.02 -0.18 4.99 29.85 0.15 -0.03 16 21 C -0.25 -3.16 5.35 -20.14 -0.11 -3.27 16 22 C 0.05 0.71 11.96 85.24 1.02 1.73 16 23 N -0.34 -5.99 12.70 -57.02 -0.72 -6.72 16 24 N -0.48 -5.77 7.36 -57.59 -0.42 -6.20 16 25 H 0.45 2.86 8.96 -213.33 -1.91 0.95 16 26 C 0.07 0.70 11.90 83.54 0.99 1.69 16 27 C -0.15 -3.24 6.59 30.59 0.20 -3.04 16 28 C 0.50 16.11 7.42 87.90 0.65 16.77 16 29 O -0.58 -26.40 14.61 -3.03 -0.04 -26.45 16 30 C 0.15 7.70 6.81 86.44 0.59 8.29 16 31 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.02 0.99 7.22 -2.38 -0.02 0.98 16 34 H 0.14 4.03 8.14 -2.38 -0.02 4.01 16 35 H 0.11 1.12 8.08 -2.39 -0.02 1.11 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.41 4.93 8.66 -92.71 -0.80 4.12 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.09 2.15 8.09 -2.39 -0.02 2.13 16 46 H 0.02 1.22 5.75 -2.39 -0.01 1.21 16 47 H 0.04 2.13 7.37 -2.39 -0.02 2.11 16 Total: -1.00 -90.18 392.10 -0.63 -90.81 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -1.70 Total: 11.93 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 7.44 Total: 27.79 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -8.31 Total: -140.35 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.09 Total: -39.31 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -90.18 -0.63 -90.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108580997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.576 kcal (2) G-P(sol) polarization free energy of solvation -90.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds