Wall clock time and date at job start Wed Apr 1 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47475 * 239.99800 * 3 2 1 5 5 H 1.48496 * 109.47412 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47064 * 120.00261 * 3 2 1 7 7 C 1.38807 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99921 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99949 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46781 * 180.02562 * 10 9 7 12 12 C 1.54170 * 111.82177 * 299.25737 * 11 10 9 13 13 C 1.54844 * 104.32605 * 261.24898 * 12 11 10 14 14 C 1.54846 * 102.73356 * 321.80869 * 13 12 11 15 15 C 1.54159 * 104.32836 * 38.19431 * 14 13 12 16 16 H 1.09006 * 112.55498 * 99.18928 * 15 14 13 17 17 C 1.54325 * 108.86371 * 223.78459 * 15 14 13 18 18 N 1.48121 * 104.69112 * 89.56191 * 17 15 14 19 19 C 1.34784 * 127.84225 * 219.74497 * 18 17 15 20 20 O 1.21273 * 119.99748 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.99881 * 0.03045 * 19 18 17 22 22 C 1.50698 * 109.46896 * 179.97438 * 21 19 18 23 23 N 1.31870 * 119.63465 * 90.00148 * 22 21 19 24 24 C 1.31854 * 121.74813 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.81990 * 0.25858 * 24 23 22 26 26 C 1.38589 * 119.18629 * 359.48868 * 25 24 23 27 27 C 1.38419 * 119.63715 * 269.97539 * 22 21 19 28 28 F 1.35099 * 120.44322 * 0.02562 * 27 22 21 29 29 C 1.48113 * 104.31309 * 40.00791 * 18 17 15 30 30 H 0.97006 * 119.99753 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.08989 * 109.47059 * 60.00253 * 10 9 7 33 33 H 1.09001 * 109.47162 * 299.99851 * 10 9 7 34 34 H 1.08994 * 110.46119 * 19.95898 * 12 11 10 35 35 H 1.08999 * 110.46043 * 142.40742 * 12 11 10 36 36 H 1.08990 * 110.76229 * 80.12078 * 13 12 11 37 37 H 1.09001 * 110.75594 * 203.31985 * 13 12 11 38 38 H 1.08996 * 110.46620 * 279.47948 * 14 13 12 39 39 H 1.09006 * 110.45862 * 156.90424 * 14 13 12 40 40 H 1.08997 * 110.39150 * 330.76463 * 17 15 14 41 41 H 1.08998 * 110.39347 * 208.36580 * 17 15 14 42 42 H 1.08995 * 109.47288 * 59.99627 * 21 19 18 43 43 H 1.09000 * 109.47239 * 299.99689 * 21 19 18 44 44 H 1.08002 * 119.58613 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.40489 * 179.72666 * 25 24 23 46 46 H 1.08007 * 120.79838 * 180.22477 * 26 25 24 47 47 H 1.09007 * 110.39382 * 78.80067 * 29 18 17 48 48 H 1.09000 * 110.39584 * 201.18368 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8196 -0.0021 12 6 0.1603 -4.8015 1.2469 13 6 0.8130 -5.8261 2.2070 14 6 1.2791 -6.9464 1.2450 15 6 1.7804 -6.1933 -0.0032 16 1 2.8650 -6.0864 -0.0195 17 6 1.2550 -6.9118 -1.2639 18 7 -0.0529 -6.2746 -1.5420 19 6 -1.1903 -6.8676 -1.9558 20 8 -2.1876 -6.2032 -2.1415 21 6 -1.2226 -8.3563 -2.1876 22 6 -2.6004 -8.7641 -2.6418 23 7 -2.8852 -8.7775 -3.9293 24 6 -4.0766 -9.1276 -4.3728 25 6 -5.0803 -9.4915 -3.4947 26 6 -4.8190 -9.4956 -2.1337 27 6 -3.5529 -9.1210 -1.7030 28 9 -3.2549 -9.1053 -0.3854 29 6 0.1747 -4.8369 -1.2682 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8877 33 1 2.6841 -3.7141 -0.8922 34 1 0.1524 -3.8089 1.6971 35 1 -0.8528 -5.1099 0.9888 36 1 1.6636 -5.3830 2.7248 37 1 0.0826 -6.2057 2.9215 38 1 0.4448 -7.5986 0.9870 39 1 2.0889 -7.5215 1.6938 40 1 1.1249 -7.9761 -1.0680 41 1 1.9373 -6.7592 -2.1002 42 1 -0.9782 -8.8739 -1.2600 43 1 -0.4940 -8.6206 -2.9540 44 1 -4.2719 -9.1257 -5.4350 45 1 -6.0550 -9.7729 -3.8650 46 1 -5.5830 -9.7788 -1.4247 47 1 0.6924 -4.3681 -2.1052 48 1 -0.7721 -4.3323 -1.0757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112517055.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:17 Heat of formation + Delta-G solvation = -30.859204 kcal Electronic energy + Delta-G solvation = -31070.637557 eV Core-core repulsion = 26846.992316 eV Total energy + Delta-G solvation = -4223.645241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.23007 -40.75269 -40.22899 -38.42375 -34.84274 -34.15215 -33.50508 -32.19217 -31.60540 -29.85435 -29.62557 -28.25751 -25.49093 -25.35086 -23.91905 -23.66051 -22.70652 -22.19024 -20.23675 -19.34016 -18.52359 -17.97168 -17.54396 -17.36426 -16.86694 -16.49543 -15.95361 -15.84803 -15.18744 -14.87798 -14.68737 -14.41190 -14.28839 -13.93733 -13.85941 -13.70627 -13.49797 -13.37279 -13.13471 -13.07022 -12.74449 -12.37956 -12.33509 -12.14538 -11.93952 -11.39494 -11.13028 -10.86533 -10.80187 -10.70043 -10.53254 -10.48579 -10.38290 -10.24302 -10.18644 -9.94315 -9.91965 -9.78816 -9.60889 -9.12453 -8.84689 -8.53219 -6.88773 -5.72497 -3.01584 0.58740 0.77852 2.68748 2.90985 3.38979 3.46368 3.50664 3.52015 3.69523 3.94293 4.24994 4.36269 4.40548 4.55057 4.59140 4.62739 4.70518 4.83201 4.96587 5.05604 5.21953 5.25198 5.37560 5.38855 5.42990 5.45824 5.52127 5.59523 5.65102 5.66750 5.67751 5.72694 5.82342 5.93901 5.99644 6.08456 6.19897 6.24490 6.27650 6.28765 6.40707 6.54502 6.58796 6.75834 6.79875 6.84763 7.53575 7.65525 7.72287 8.21887 8.45782 9.57046 10.14654 10.49229 11.49987 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002654 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.299225 B =10546.593030 C =11413.033785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.174 3.826 11 C -0.073 4.073 12 C -0.112 4.112 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.099 4.099 16 H 0.096 0.904 17 C 0.104 3.896 18 N -0.618 5.618 19 C 0.541 3.459 20 O -0.534 6.534 21 C -0.091 4.091 22 C 0.127 3.873 23 N -0.448 5.448 24 C 0.093 3.907 25 C -0.146 4.146 26 C -0.108 4.108 27 C 0.062 3.938 28 F -0.127 7.127 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.165 0.835 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.075 0.925 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -25.875 -3.576 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.046 3.954 11 C -0.074 4.074 12 C -0.150 4.150 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.119 4.119 16 H 0.114 0.886 17 C -0.020 4.020 18 N -0.352 5.352 19 C 0.329 3.671 20 O -0.410 6.410 21 C -0.132 4.132 22 C -0.013 4.013 23 N -0.156 5.156 24 C -0.064 4.064 25 C -0.166 4.166 26 C -0.135 4.135 27 C 0.040 3.960 28 F -0.105 7.105 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.094 0.906 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.169 -25.199 -4.275 25.897 hybrid contribution -0.473 0.753 0.798 1.195 sum -4.641 -24.446 -3.477 25.124 Atomic orbital electron populations 1.69655 1.05073 1.25757 1.57501 1.24734 0.95483 0.97640 1.03012 0.86284 0.78505 0.83690 0.77775 1.21323 1.21750 1.21336 1.19151 0.90940 0.84149 1.42937 0.91287 1.42365 1.05928 0.99777 1.89423 1.20547 0.92288 0.84586 0.97937 1.22343 0.95636 0.94612 0.94844 1.22426 0.97569 1.00442 0.94532 1.22451 1.00164 0.95943 0.97305 1.22385 0.99988 0.97474 0.95266 1.22761 1.00352 0.94717 0.94060 0.88590 1.22532 0.84472 0.97264 0.97683 1.48917 1.09917 1.10139 1.66223 1.19675 0.81874 0.88694 0.76906 1.90750 1.33167 1.65669 1.51429 1.20524 0.94075 0.94438 1.04150 1.20618 0.95173 0.96776 0.88701 1.67484 1.21900 1.11642 1.14555 1.22828 0.87981 0.94742 1.00898 1.22082 1.01322 1.00482 0.92706 1.21647 0.95333 0.99065 0.97431 1.18508 0.95198 1.03416 0.78828 1.91526 1.93539 1.94057 1.31395 1.22498 1.00531 0.80033 0.96939 0.93454 0.78072 0.95785 0.96198 0.89897 0.92200 0.91378 0.92122 0.91964 0.91839 0.90479 0.90864 0.87121 0.86443 0.81799 0.83667 0.83423 0.90644 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -18.14 4.92 -59.91 -0.30 -18.43 16 10 C 0.17 3.37 5.19 -4.04 -0.02 3.35 16 11 C -0.07 -1.15 0.62 -151.97 -0.09 -1.25 16 12 C -0.11 -1.83 5.59 -25.15 -0.14 -1.97 16 13 C -0.12 -1.58 6.90 -24.79 -0.17 -1.75 16 14 C -0.11 -1.24 6.25 -25.15 -0.16 -1.39 16 15 C -0.10 -1.17 3.57 -88.30 -0.31 -1.49 16 16 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 17 C 0.10 1.10 6.19 -2.46 -0.02 1.08 16 18 N -0.62 -8.85 3.31 -169.18 -0.56 -9.41 16 19 C 0.54 8.35 7.91 -10.98 -0.09 8.26 16 20 O -0.53 -10.65 16.30 5.56 0.09 -10.56 16 21 C -0.09 -1.03 4.79 -29.04 -0.14 -1.17 16 22 C 0.13 1.58 5.28 -82.51 -0.44 1.15 16 23 N -0.45 -5.52 10.27 -9.42 -0.10 -5.62 16 24 C 0.09 0.85 11.18 -17.54 -0.20 0.66 16 25 C -0.15 -1.11 10.11 -39.45 -0.40 -1.51 16 26 C -0.11 -0.97 10.16 -39.22 -0.40 -1.37 16 27 C 0.06 0.73 7.27 -39.28 -0.29 0.44 16 28 F -0.13 -1.55 16.49 2.25 0.04 -1.52 16 29 C 0.12 2.09 5.51 -2.25 -0.01 2.07 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.39 10.21 6.87 -40.82 -0.28 9.93 16 32 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.60 7.14 -51.93 -0.37 1.22 16 35 H 0.06 1.03 7.60 -51.93 -0.39 0.63 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.67 7.58 -51.93 -0.39 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.61 6.86 -51.93 -0.36 0.26 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.00 7.44 -51.93 -0.39 0.62 16 43 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 47 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 48 H 0.09 1.72 7.46 -51.93 -0.39 1.33 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -34.95 391.36 -9.51 -44.45 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.17 Total: 7.57 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.11 Total: -2.18 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.23 Total: -61.21 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.95 -9.51 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112517055.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.593 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds