Wall clock time and date at job start Wed Apr 1 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47475 * 239.99800 * 3 2 1 5 5 H 1.48496 * 109.47412 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47064 * 120.00261 * 3 2 1 7 7 C 1.38807 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99921 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99949 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46781 * 180.02562 * 10 9 7 12 12 C 1.54170 * 111.82177 * 299.25737 * 11 10 9 13 13 C 1.54844 * 104.32605 * 261.24898 * 12 11 10 14 14 C 1.54846 * 102.73356 * 321.80869 * 13 12 11 15 15 C 1.54159 * 104.32836 * 38.19431 * 14 13 12 16 16 H 1.09006 * 112.55498 * 99.18928 * 15 14 13 17 17 C 1.54325 * 108.86371 * 223.78459 * 15 14 13 18 18 N 1.48121 * 104.69112 * 89.56191 * 17 15 14 19 19 C 1.34784 * 127.84225 * 219.74497 * 18 17 15 20 20 O 1.21273 * 119.99748 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.99881 * 0.03045 * 19 18 17 22 22 C 1.50698 * 109.46896 * 179.97438 * 21 19 18 23 23 N 1.31870 * 119.63465 * 90.00148 * 22 21 19 24 24 C 1.31854 * 121.74813 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.81990 * 0.25858 * 24 23 22 26 26 C 1.38589 * 119.18629 * 359.48868 * 25 24 23 27 27 C 1.38419 * 119.63715 * 269.97539 * 22 21 19 28 28 F 1.35099 * 120.44322 * 0.02562 * 27 22 21 29 29 C 1.48113 * 104.31309 * 40.00791 * 18 17 15 30 30 H 0.97006 * 119.99753 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.08989 * 109.47059 * 60.00253 * 10 9 7 33 33 H 1.09001 * 109.47162 * 299.99851 * 10 9 7 34 34 H 1.08994 * 110.46119 * 19.95898 * 12 11 10 35 35 H 1.08999 * 110.46043 * 142.40742 * 12 11 10 36 36 H 1.08990 * 110.76229 * 80.12078 * 13 12 11 37 37 H 1.09001 * 110.75594 * 203.31985 * 13 12 11 38 38 H 1.08996 * 110.46620 * 279.47948 * 14 13 12 39 39 H 1.09006 * 110.45862 * 156.90424 * 14 13 12 40 40 H 1.08997 * 110.39150 * 330.76463 * 17 15 14 41 41 H 1.08998 * 110.39347 * 208.36580 * 17 15 14 42 42 H 1.08995 * 109.47288 * 59.99627 * 21 19 18 43 43 H 1.09000 * 109.47239 * 299.99689 * 21 19 18 44 44 H 1.08002 * 119.58613 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.40489 * 179.72666 * 25 24 23 46 46 H 1.08007 * 120.79838 * 180.22477 * 26 25 24 47 47 H 1.09007 * 110.39382 * 78.80067 * 29 18 17 48 48 H 1.09000 * 110.39584 * 201.18368 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8196 -0.0021 12 6 0.1603 -4.8015 1.2469 13 6 0.8130 -5.8261 2.2070 14 6 1.2791 -6.9464 1.2450 15 6 1.7804 -6.1933 -0.0032 16 1 2.8650 -6.0864 -0.0195 17 6 1.2550 -6.9118 -1.2639 18 7 -0.0529 -6.2746 -1.5420 19 6 -1.1903 -6.8676 -1.9558 20 8 -2.1876 -6.2032 -2.1415 21 6 -1.2226 -8.3563 -2.1876 22 6 -2.6004 -8.7641 -2.6418 23 7 -2.8852 -8.7775 -3.9293 24 6 -4.0766 -9.1276 -4.3728 25 6 -5.0803 -9.4915 -3.4947 26 6 -4.8190 -9.4956 -2.1337 27 6 -3.5529 -9.1210 -1.7030 28 9 -3.2549 -9.1053 -0.3854 29 6 0.1747 -4.8369 -1.2682 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8877 33 1 2.6841 -3.7141 -0.8922 34 1 0.1524 -3.8089 1.6971 35 1 -0.8528 -5.1099 0.9888 36 1 1.6636 -5.3830 2.7248 37 1 0.0826 -6.2057 2.9215 38 1 0.4448 -7.5986 0.9870 39 1 2.0889 -7.5215 1.6938 40 1 1.1249 -7.9761 -1.0680 41 1 1.9373 -6.7592 -2.1002 42 1 -0.9782 -8.8739 -1.2600 43 1 -0.4940 -8.6206 -2.9540 44 1 -4.2719 -9.1257 -5.4350 45 1 -6.0550 -9.7729 -3.8650 46 1 -5.5830 -9.7788 -1.4247 47 1 0.6924 -4.3681 -2.1052 48 1 -0.7721 -4.3323 -1.0757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112517055.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:16 Heat of formation + Delta-G solvation = -53.707098 kcal Electronic energy + Delta-G solvation = -31071.628316 eV Core-core repulsion = 26846.992316 eV Total energy + Delta-G solvation = -4224.636000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.07461 -41.84204 -41.08942 -39.63010 -36.50300 -35.55210 -34.30187 -33.44790 -32.93109 -31.16595 -30.88318 -29.32973 -27.03672 -26.52217 -25.23124 -24.60874 -23.92848 -23.37219 -21.33337 -20.47827 -19.88945 -19.10525 -18.75226 -18.31167 -18.11649 -17.35806 -17.09660 -16.82940 -16.56105 -16.24773 -16.07177 -15.77413 -15.19676 -15.00229 -14.95392 -14.78895 -14.75393 -14.67296 -14.30464 -14.22197 -14.05956 -13.64792 -13.23712 -13.12985 -13.03732 -12.98171 -12.80468 -12.63333 -12.23598 -12.04944 -11.88272 -11.82761 -11.67433 -11.54301 -11.47820 -11.38969 -11.13513 -10.91631 -10.83658 -10.65815 -9.90143 -9.74652 -8.97940 -7.93694 -5.22555 -0.15440 0.07227 1.45873 1.49479 1.52439 1.55519 1.84420 2.56043 2.60838 2.96254 3.18545 3.29802 3.39646 3.49464 3.52531 3.61726 3.70739 3.79558 3.96851 4.15492 4.23101 4.25140 4.29388 4.32384 4.34925 4.40681 4.46332 4.51836 4.59417 4.66301 4.68815 4.70262 4.77282 4.89428 4.93734 4.95724 4.99329 5.00279 5.08548 5.14841 5.23909 5.31636 5.40489 5.44122 5.50973 5.54791 5.60418 6.27366 6.52805 6.80306 7.04546 7.33625 8.10968 8.32888 9.29883 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002654 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.299225 B =10546.593030 C =11413.033785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.174 3.826 11 C -0.067 4.067 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.104 4.104 15 C -0.091 4.091 16 H 0.119 0.881 17 C 0.101 3.899 18 N -0.615 5.615 19 C 0.534 3.466 20 O -0.592 6.592 21 C -0.080 4.080 22 C 0.100 3.900 23 N -0.478 5.478 24 C 0.082 3.918 25 C -0.133 4.133 26 C -0.112 4.112 27 C 0.036 3.964 28 F -0.136 7.136 29 C 0.127 3.873 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.193 0.807 45 H 0.186 0.814 46 H 0.172 0.828 47 H 0.059 0.941 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -29.081 -3.851 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.048 3.952 11 C -0.069 4.069 12 C -0.149 4.149 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.110 4.110 16 H 0.137 0.863 17 C -0.020 4.020 18 N -0.348 5.348 19 C 0.324 3.676 20 O -0.472 6.472 21 C -0.120 4.120 22 C -0.038 4.038 23 N -0.187 5.187 24 C -0.075 4.075 25 C -0.152 4.152 26 C -0.138 4.138 27 C 0.015 3.985 28 F -0.115 7.115 29 C 0.003 3.997 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.210 0.790 45 H 0.203 0.797 46 H 0.190 0.810 47 H 0.078 0.922 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.523 -28.466 -4.537 28.935 hybrid contribution -1.033 1.728 0.832 2.178 sum -3.556 -26.738 -3.705 27.227 Atomic orbital electron populations 1.69847 1.06826 1.25979 1.59787 1.25599 0.96295 1.01280 1.03981 0.85193 0.77101 0.79080 0.78278 1.20299 1.22593 1.20158 1.19629 0.91586 0.85262 1.40771 0.90224 1.42607 1.05550 1.01228 1.89263 1.20714 0.92813 0.83554 0.98155 1.22207 0.95011 0.96091 0.93560 1.22310 0.97296 0.99456 0.95793 1.22445 1.00075 0.95731 0.97216 1.22383 1.01261 0.96599 0.93862 1.22817 1.01185 0.91602 0.95390 0.86328 1.22862 0.82419 0.99026 0.97670 1.48985 1.11375 1.08861 1.65530 1.20537 0.81059 0.90382 0.75654 1.90713 1.35321 1.67298 1.53902 1.20543 0.94695 0.90752 1.06032 1.20779 0.95922 0.97995 0.89149 1.67477 1.23731 1.12777 1.14680 1.23457 0.87522 0.93851 1.02691 1.22532 1.02506 0.98371 0.91810 1.22070 0.94831 0.98183 0.98758 1.18818 0.96447 1.04816 0.78464 1.91488 1.93739 1.94326 1.31970 1.22178 0.98331 0.81995 0.97172 0.94231 0.79697 0.95051 0.95443 0.93882 0.94072 0.91243 0.91318 0.91328 0.88459 0.86457 0.89115 0.84617 0.84204 0.79049 0.79655 0.81013 0.92225 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -38.48 4.92 -343.46 -1.69 -40.17 16 10 C 0.17 6.77 5.19 86.38 0.45 7.22 16 11 C -0.07 -2.15 0.62 -50.54 -0.03 -2.18 16 12 C -0.11 -3.78 5.59 31.62 0.18 -3.61 16 13 C -0.12 -2.90 6.90 31.85 0.22 -2.68 16 14 C -0.10 -1.87 6.25 31.62 0.20 -1.67 16 15 C -0.09 -1.86 3.57 -9.29 -0.03 -1.89 16 16 H 0.12 2.01 7.88 -2.38 -0.02 1.99 16 17 C 0.10 1.82 6.19 86.52 0.54 2.36 16 18 N -0.61 -17.49 3.31 -807.56 -2.67 -20.17 16 19 C 0.53 16.70 7.91 87.66 0.69 17.40 16 20 O -0.59 -25.09 16.30 -3.01 -0.05 -25.14 16 21 C -0.08 -1.71 4.79 29.10 0.14 -1.57 16 22 C 0.10 2.46 5.28 42.60 0.22 2.68 16 23 N -0.48 -11.47 10.27 -183.71 -1.89 -13.36 16 24 C 0.08 1.37 11.18 84.69 0.95 2.32 16 25 C -0.13 -1.69 10.11 22.35 0.23 -1.46 16 26 C -0.11 -1.84 10.16 22.51 0.23 -1.61 16 27 C 0.04 0.83 7.27 22.47 0.16 0.99 16 28 F -0.14 -3.32 16.49 44.97 0.74 -2.58 16 29 C 0.13 4.59 5.51 86.66 0.48 5.07 16 30 H 0.25 15.52 8.31 -92.70 -0.77 14.75 16 31 H 0.37 21.10 6.87 -92.71 -0.64 20.47 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.79 7.14 -2.39 -0.02 1.77 16 35 H 0.04 1.53 7.60 -2.39 -0.02 1.51 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.19 7.58 -2.39 -0.02 1.18 16 39 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.12 1.25 6.86 -2.39 -0.02 1.23 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.14 2.11 7.44 -2.39 -0.02 2.10 16 43 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 46 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.06 2.30 7.99 -2.38 -0.02 2.28 16 48 H 0.04 1.78 7.46 -2.39 -0.02 1.76 16 Total: -1.00 -83.06 391.36 3.01 -80.05 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.34 Total: 29.64 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.92 Total: 4.32 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -5.97 Total: -135.63 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -83.06 3.01 -80.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112517055.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.340 kcal (2) G-P(sol) polarization free energy of solvation -83.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds