Wall clock time and date at job start Wed Apr 1 2020 04:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86808 * 119.99667 * 2 1 4 4 H 1.48500 * 109.46766 * 269.99751 * 3 2 1 5 5 H 1.48498 * 109.47106 * 29.99274 * 3 2 1 6 6 H 1.48499 * 109.47012 * 149.99790 * 3 2 1 7 7 C 1.38947 * 120.00570 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00244 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99840 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00219 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00053 * 169.99946 * 13 12 10 15 15 C 1.53248 * 109.33659 * 187.25230 * 14 13 12 16 16 N 1.47080 * 108.52317 * 306.16700 * 15 14 13 17 17 C 1.34775 * 120.88390 * 231.18928 * 16 15 14 18 18 O 1.21565 * 119.99904 * 184.42284 * 17 16 15 19 19 C 1.47709 * 119.99881 * 4.42594 * 17 16 15 20 20 N 1.31849 * 126.57104 * 354.08399 * 19 17 16 21 21 N 1.28455 * 110.05676 * 179.97438 * 20 19 17 22 22 H 0.96999 * 124.88528 * 179.97438 * 21 20 19 23 23 C 1.35256 * 110.23566 * 359.97438 * 21 20 19 24 24 C 1.35050 * 107.07375 * 0.02562 * 23 21 20 25 25 C 1.50947 * 110.52877 * 179.76972 * 24 23 21 26 26 C 1.54393 * 105.02631 * 343.51943 * 25 24 23 27 27 C 1.51235 * 142.77253 * 180.02562 * 23 21 20 28 28 C 1.47088 * 118.23302 * 51.45952 * 16 15 14 29 29 C 1.46906 * 110.99668 * 294.30063 * 13 12 10 30 30 H 0.96998 * 120.00732 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00311 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47535 * 59.99374 * 12 10 9 33 33 H 1.09000 * 109.47040 * 299.99302 * 12 10 9 34 34 H 1.08997 * 109.49635 * 67.29683 * 14 13 12 35 35 H 1.08998 * 109.51711 * 307.22063 * 14 13 12 36 36 H 1.08998 * 109.62552 * 186.45824 * 15 14 13 37 37 H 1.08997 * 109.62755 * 65.88245 * 15 14 13 38 38 H 1.09003 * 110.34210 * 102.40747 * 25 24 23 39 39 H 1.08996 * 110.34260 * 224.66329 * 25 24 23 40 40 H 1.09005 * 110.76887 * 267.10250 * 26 25 24 41 41 H 1.09000 * 111.06200 * 143.49905 * 26 25 24 42 42 H 1.09002 * 110.32512 * 315.73343 * 27 23 21 43 43 H 1.08995 * 110.32663 * 77.84673 * 27 23 21 44 44 H 1.08994 * 109.62732 * 68.25577 * 28 16 15 45 45 H 1.08998 * 109.62205 * 188.83551 * 28 16 15 46 46 H 1.09004 * 109.49156 * 292.70247 * 29 13 12 47 47 H 1.09001 * 109.49247 * 52.78427 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4453 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3905 0.0005 10 6 1.9975 -3.5577 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0010 13 7 2.1987 -5.9794 0.0017 14 6 1.5141 -7.2572 0.2394 15 6 2.5567 -8.3668 0.4129 16 7 3.4553 -8.3499 -0.7513 17 6 3.7062 -9.4760 -1.4480 18 8 4.5129 -9.4611 -2.3573 19 6 3.0009 -10.7281 -1.1068 20 7 2.1886 -10.9191 -0.0859 21 7 1.7509 -12.1268 -0.0912 22 1 1.1393 -12.4980 0.5638 23 6 2.2655 -12.8063 -1.1413 24 6 3.0667 -11.9513 -1.8127 25 6 3.6902 -12.6357 -3.0049 26 6 3.4985 -14.1455 -2.7453 27 6 2.2627 -14.1586 -1.8186 28 6 4.0777 -7.0725 -1.1313 29 6 2.9707 -6.0127 -1.2477 30 1 -0.4851 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.6183 -4.9209 -0.8896 33 1 0.6164 -4.9205 0.8903 34 1 0.8732 -7.4902 -0.6109 35 1 0.9080 -7.1832 1.1423 36 1 2.0561 -9.3331 0.4750 37 1 3.1316 -8.1901 1.3219 38 1 3.1786 -12.3411 -3.9213 39 1 4.7512 -12.3946 -3.0682 40 1 4.3687 -14.5643 -2.2397 41 1 3.2952 -14.6798 -3.6733 42 1 2.3532 -14.9532 -1.0779 43 1 1.3513 -14.2878 -2.4021 44 1 4.7961 -6.7738 -0.3679 45 1 4.5832 -7.1827 -2.0907 46 1 2.3094 -6.2630 -2.0773 47 1 3.4212 -5.0358 -1.4230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113059897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:26 Heat of formation + Delta-G solvation = 43.976902 kcal Electronic energy + Delta-G solvation = -30269.976911 eV Core-core repulsion = 26069.496769 eV Total energy + Delta-G solvation = -4200.480142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.25146 -39.91105 -38.52127 -37.30159 -37.05941 -34.44881 -33.71344 -32.41413 -31.23022 -30.79670 -29.16631 -28.84512 -27.91841 -25.88632 -24.46243 -23.72334 -23.08479 -22.08281 -20.80469 -20.36110 -19.22555 -18.79880 -18.01339 -17.82150 -16.87506 -16.60778 -16.00338 -15.81709 -15.39091 -15.00903 -14.76431 -14.74648 -14.46995 -14.04970 -13.83989 -13.77462 -13.69034 -13.54256 -13.35039 -13.19719 -12.73344 -12.30839 -12.20074 -12.01220 -11.62244 -11.58000 -11.51100 -11.48279 -11.40613 -11.08727 -10.92923 -10.83336 -10.41037 -10.37373 -10.19921 -9.96106 -9.64859 -9.45381 -8.97870 -8.74515 -8.30500 -7.95585 -7.82855 -6.39958 -3.80604 1.28482 1.76915 2.24814 2.97506 3.19374 3.27976 3.29323 3.34109 3.79564 3.92206 4.03890 4.17839 4.22946 4.28385 4.55248 4.67708 4.77307 5.00390 5.06952 5.10841 5.17433 5.26307 5.27356 5.32477 5.43591 5.44161 5.47908 5.53698 5.61391 5.76654 5.77974 5.81525 5.83560 5.91083 5.94889 5.98440 6.15398 6.25266 6.29034 6.31671 6.57305 6.76924 7.20952 7.39682 7.42631 7.57077 7.59101 8.08360 8.15839 8.63642 9.19973 9.56381 10.08082 10.77788 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.001916 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.519366 B =14609.446734 C =15080.236908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.043 3.957 15 C 0.084 3.916 16 N -0.597 5.597 17 C 0.597 3.403 18 O -0.535 6.535 19 C 0.020 3.980 20 N -0.252 5.252 21 N -0.367 5.367 22 H 0.443 0.557 23 C -0.019 4.019 24 C -0.160 4.160 25 C -0.048 4.048 26 C -0.116 4.116 27 C -0.037 4.037 28 C 0.121 3.879 29 C 0.041 3.959 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -30.152 -1.883 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.086 4.086 15 C -0.040 4.040 16 N -0.330 5.330 17 C 0.383 3.617 18 O -0.410 6.410 19 C -0.140 4.140 20 N -0.087 5.087 21 N -0.078 5.078 22 H 0.287 0.713 23 C -0.146 4.146 24 C -0.170 4.170 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.076 4.076 28 C -0.001 4.001 29 C -0.087 4.087 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.045 0.955 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.089 -29.316 -1.091 29.337 hybrid contribution -1.133 0.414 -0.616 1.354 sum -1.044 -28.902 -1.707 28.972 Atomic orbital electron populations 1.69607 1.05939 1.28121 1.50718 1.25258 0.95629 0.99720 0.97385 0.85860 0.79252 0.80834 0.78359 1.20449 1.20966 1.19398 1.19700 0.93370 0.82192 1.47462 0.87876 1.41872 1.09185 1.04598 1.64440 1.19735 0.88416 0.84527 0.84397 1.90481 1.13660 1.86863 1.55086 1.21850 0.93931 0.91194 1.01509 1.61543 1.25151 1.01467 1.35869 1.22486 0.95505 0.89663 1.00970 1.22771 0.91826 1.01689 0.87704 1.48096 1.46497 1.08295 1.30093 1.17012 0.81448 0.81405 0.81800 1.90772 1.34820 1.84496 1.30946 1.21419 1.01701 0.95448 0.95392 1.73366 1.14341 0.99037 1.21967 1.42833 1.36205 1.06968 1.21821 0.71292 1.22204 1.00841 0.99296 0.92259 1.20842 1.03249 0.92287 1.00636 1.20397 1.01609 0.92383 0.94279 1.22420 0.97046 0.96407 0.99484 1.20650 1.00174 0.89533 0.97214 1.21902 0.95470 0.80595 1.02137 1.22734 0.95309 1.01485 0.89202 0.91911 0.77517 0.93543 0.89268 0.95020 0.89729 0.84860 0.90808 0.90160 0.90011 0.90454 0.89679 0.90349 0.89484 0.90117 0.88901 0.95542 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C 0.44 10.47 7.44 -10.98 -0.08 10.39 16 11 O -0.58 -15.40 13.91 5.55 0.08 -15.32 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 13 N -0.52 -8.86 4.37 -235.46 -1.03 -9.89 16 14 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 15 C 0.08 1.09 6.47 -3.60 -0.02 1.07 16 16 N -0.60 -8.94 3.00 -173.34 -0.52 -9.46 16 17 C 0.60 9.29 7.71 -12.39 -0.10 9.20 16 18 O -0.54 -9.59 16.40 5.31 0.09 -9.50 16 19 C 0.02 0.26 6.90 -82.80 -0.57 -0.31 16 20 N -0.25 -2.70 8.59 33.40 0.29 -2.42 16 21 N -0.37 -2.74 6.84 33.61 0.23 -2.51 16 22 H 0.44 1.57 8.96 -190.45 -1.71 -0.14 16 23 C -0.02 -0.15 8.12 -81.95 -0.67 -0.81 16 24 C -0.16 -1.75 6.83 -104.44 -0.71 -2.46 16 25 C -0.05 -0.41 6.77 -27.03 -0.18 -0.59 16 26 C -0.12 -0.56 7.13 -25.23 -0.18 -0.74 16 27 C -0.04 -0.16 6.78 -26.85 -0.18 -0.34 16 28 C 0.12 1.93 6.61 -3.36 -0.02 1.91 16 29 C 0.04 0.71 5.27 -3.46 -0.02 0.69 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 36 H 0.13 1.56 3.82 -106.75 -0.41 1.16 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 46 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.12 2.34 5.76 -51.93 -0.30 2.04 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -34.88 379.11 -10.63 -45.51 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.09 Total: 8.60 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -3.02 Total: 11.41 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.37 Total: -62.58 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.88 -10.63 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113059897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.485 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds