Wall clock time and date at job start Wed Apr 1 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86808 * 119.99667 * 2 1 4 4 H 1.48500 * 109.46766 * 269.99751 * 3 2 1 5 5 H 1.48498 * 109.47106 * 29.99274 * 3 2 1 6 6 H 1.48499 * 109.47012 * 149.99790 * 3 2 1 7 7 C 1.38947 * 120.00570 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00244 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99840 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00219 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00053 * 169.99946 * 13 12 10 15 15 C 1.53248 * 109.33659 * 187.25230 * 14 13 12 16 16 N 1.47080 * 108.52317 * 306.16700 * 15 14 13 17 17 C 1.34775 * 120.88390 * 231.18928 * 16 15 14 18 18 O 1.21565 * 119.99904 * 184.42284 * 17 16 15 19 19 C 1.47709 * 119.99881 * 4.42594 * 17 16 15 20 20 N 1.31849 * 126.57104 * 354.08399 * 19 17 16 21 21 N 1.28455 * 110.05676 * 179.97438 * 20 19 17 22 22 H 0.96999 * 124.88528 * 179.97438 * 21 20 19 23 23 C 1.35256 * 110.23566 * 359.97438 * 21 20 19 24 24 C 1.35050 * 107.07375 * 0.02562 * 23 21 20 25 25 C 1.50947 * 110.52877 * 179.76972 * 24 23 21 26 26 C 1.54393 * 105.02631 * 343.51943 * 25 24 23 27 27 C 1.51235 * 142.77253 * 180.02562 * 23 21 20 28 28 C 1.47088 * 118.23302 * 51.45952 * 16 15 14 29 29 C 1.46906 * 110.99668 * 294.30063 * 13 12 10 30 30 H 0.96998 * 120.00732 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00311 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47535 * 59.99374 * 12 10 9 33 33 H 1.09000 * 109.47040 * 299.99302 * 12 10 9 34 34 H 1.08997 * 109.49635 * 67.29683 * 14 13 12 35 35 H 1.08998 * 109.51711 * 307.22063 * 14 13 12 36 36 H 1.08998 * 109.62552 * 186.45824 * 15 14 13 37 37 H 1.08997 * 109.62755 * 65.88245 * 15 14 13 38 38 H 1.09003 * 110.34210 * 102.40747 * 25 24 23 39 39 H 1.08996 * 110.34260 * 224.66329 * 25 24 23 40 40 H 1.09005 * 110.76887 * 267.10250 * 26 25 24 41 41 H 1.09000 * 111.06200 * 143.49905 * 26 25 24 42 42 H 1.09002 * 110.32512 * 315.73343 * 27 23 21 43 43 H 1.08995 * 110.32663 * 77.84673 * 27 23 21 44 44 H 1.08994 * 109.62732 * 68.25577 * 28 16 15 45 45 H 1.08998 * 109.62205 * 188.83551 * 28 16 15 46 46 H 1.09004 * 109.49156 * 292.70247 * 29 13 12 47 47 H 1.09001 * 109.49247 * 52.78427 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4453 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3905 0.0005 10 6 1.9975 -3.5577 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0010 13 7 2.1987 -5.9794 0.0017 14 6 1.5141 -7.2572 0.2394 15 6 2.5567 -8.3668 0.4129 16 7 3.4553 -8.3499 -0.7513 17 6 3.7062 -9.4760 -1.4480 18 8 4.5129 -9.4611 -2.3573 19 6 3.0009 -10.7281 -1.1068 20 7 2.1886 -10.9191 -0.0859 21 7 1.7509 -12.1268 -0.0912 22 1 1.1393 -12.4980 0.5638 23 6 2.2655 -12.8063 -1.1413 24 6 3.0667 -11.9513 -1.8127 25 6 3.6902 -12.6357 -3.0049 26 6 3.4985 -14.1455 -2.7453 27 6 2.2627 -14.1586 -1.8186 28 6 4.0777 -7.0725 -1.1313 29 6 2.9707 -6.0127 -1.2477 30 1 -0.4851 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.6183 -4.9209 -0.8896 33 1 0.6164 -4.9205 0.8903 34 1 0.8732 -7.4902 -0.6109 35 1 0.9080 -7.1832 1.1423 36 1 2.0561 -9.3331 0.4750 37 1 3.1316 -8.1901 1.3219 38 1 3.1786 -12.3411 -3.9213 39 1 4.7512 -12.3946 -3.0682 40 1 4.3687 -14.5643 -2.2397 41 1 3.2952 -14.6798 -3.6733 42 1 2.3532 -14.9532 -1.0779 43 1 1.3513 -14.2878 -2.4021 44 1 4.7961 -6.7738 -0.3679 45 1 4.5832 -7.1827 -2.0907 46 1 2.3094 -6.2630 -2.0773 47 1 3.4212 -5.0358 -1.4230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113059897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:25 Heat of formation + Delta-G solvation = 17.783294 kcal Electronic energy + Delta-G solvation = -30271.112751 eV Core-core repulsion = 26069.496769 eV Total energy + Delta-G solvation = -4201.615982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.98459 -41.17531 -40.19646 -38.63685 -37.75371 -36.08568 -35.42623 -33.38248 -33.19166 -31.94302 -30.23607 -29.79740 -28.50768 -27.49028 -25.93815 -25.08408 -24.23616 -22.64025 -21.92131 -21.20785 -20.96340 -19.96685 -19.80046 -18.71685 -17.96613 -17.63563 -17.31657 -17.09429 -16.61490 -16.45293 -16.25350 -16.07557 -15.55301 -15.43479 -15.33951 -15.27109 -14.96472 -14.39427 -14.24244 -14.13782 -13.84816 -13.62646 -13.48128 -13.14200 -12.97124 -12.89564 -12.77641 -12.56823 -12.41167 -12.30903 -12.19369 -12.09916 -12.02951 -11.92297 -11.47409 -11.45917 -11.04867 -10.45821 -10.32970 -10.00170 -9.81451 -9.62651 -9.24793 -8.45863 -5.94098 0.37040 1.04724 1.37853 1.41632 1.54316 1.57920 1.91614 2.05962 2.20565 2.28934 2.72192 3.09533 3.20883 3.35088 3.49968 3.68329 3.79390 3.95289 4.02727 4.10579 4.20575 4.23563 4.26980 4.28317 4.44637 4.47626 4.50835 4.58346 4.63319 4.76623 4.80026 4.84337 4.85648 4.95509 4.99717 5.05058 5.07430 5.19978 5.33522 5.38308 5.41899 5.46362 5.79585 6.01823 6.09103 6.14876 6.30336 6.61547 6.77117 7.02174 7.13957 7.57385 8.13194 8.71526 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.001916 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.519366 B =14609.446734 C =15080.236908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.612 6.612 12 C 0.059 3.941 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.086 3.914 16 N -0.599 5.599 17 C 0.593 3.407 18 O -0.571 6.571 19 C -0.015 4.015 20 N -0.257 5.257 21 N -0.346 5.346 22 H 0.462 0.538 23 C 0.004 3.996 24 C -0.197 4.197 25 C -0.055 4.055 26 C -0.107 4.107 27 C -0.032 4.032 28 C 0.128 3.872 29 C 0.050 3.950 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.037 0.963 35 H 0.111 0.889 36 H 0.153 0.847 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.029 0.971 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -32.851 -1.122 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.072 4.072 13 N -0.256 5.256 14 C -0.082 4.082 15 C -0.036 4.036 16 N -0.331 5.331 17 C 0.381 3.619 18 O -0.450 6.450 19 C -0.173 4.173 20 N -0.093 5.093 21 N -0.060 5.060 22 H 0.311 0.689 23 C -0.125 4.125 24 C -0.207 4.207 25 C -0.093 4.093 26 C -0.145 4.145 27 C -0.070 4.070 28 C 0.005 3.995 29 C -0.078 4.078 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.055 0.945 35 H 0.129 0.871 36 H 0.170 0.830 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.946 -32.040 -0.298 32.100 hybrid contribution -0.517 1.139 -0.842 1.508 sum -2.463 -30.901 -1.140 31.020 Atomic orbital electron populations 1.69665 1.06780 1.29224 1.50506 1.26019 0.96546 1.02356 0.96417 0.84942 0.77901 0.77010 0.78566 1.19773 1.19519 1.19832 1.19648 0.92683 0.83965 1.49701 0.90304 1.41926 1.09298 1.04663 1.65254 1.20734 0.88320 0.85873 0.82209 1.90464 1.15623 1.87701 1.56047 1.21739 0.93511 0.88360 1.03600 1.61514 1.25716 1.02837 1.35523 1.22597 0.95625 0.87655 1.02339 1.22922 0.91456 1.02520 0.86752 1.48160 1.46668 1.07676 1.30614 1.17442 0.81071 0.82268 0.81155 1.90732 1.36480 1.85243 1.32511 1.21146 1.03567 0.95110 0.97436 1.73117 1.14218 1.00667 1.21343 1.42887 1.35308 1.05974 1.21848 0.68905 1.22756 0.98661 1.00143 0.90912 1.21252 1.05000 0.92255 1.02203 1.20508 1.00059 0.95128 0.93620 1.22446 0.97676 0.93458 1.00871 1.20852 1.00652 0.87943 0.97574 1.21666 0.94957 0.81217 1.01610 1.22502 0.95603 0.99969 0.89764 0.91353 0.77034 0.91823 0.86449 0.94504 0.87059 0.83050 0.90933 0.90567 0.92179 0.90007 0.87379 0.87507 0.87384 0.90997 0.89521 0.95277 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.06 13.05 21.66 0.28 -49.77 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.70 5.29 -306.99 -1.62 -31.32 16 10 C 0.44 21.21 7.44 87.66 0.65 21.87 16 11 O -0.61 -33.97 13.91 -3.05 -0.04 -34.01 16 12 C 0.06 2.07 5.45 85.56 0.47 2.54 16 13 N -0.53 -17.99 4.37 -898.85 -3.93 -21.91 16 14 C 0.05 1.16 5.62 86.39 0.49 1.65 16 15 C 0.09 2.17 6.47 86.35 0.56 2.73 16 16 N -0.60 -18.32 3.00 -820.59 -2.46 -20.79 16 17 C 0.59 19.10 7.71 86.75 0.67 19.77 16 18 O -0.57 -21.76 16.40 -3.92 -0.06 -21.83 16 19 C -0.01 -0.38 6.90 42.42 0.29 -0.09 16 20 N -0.26 -5.07 8.59 -48.24 -0.41 -5.48 16 21 N -0.35 -4.15 6.84 -47.56 -0.33 -4.47 16 22 H 0.46 1.54 8.96 -220.00 -1.97 -0.44 16 23 C 0.00 0.05 8.12 41.47 0.34 0.38 16 24 C -0.20 -4.14 6.83 -19.75 -0.13 -4.28 16 25 C -0.05 -0.91 6.77 30.40 0.21 -0.70 16 26 C -0.11 -0.73 7.13 31.57 0.22 -0.51 16 27 C -0.03 -0.15 6.78 30.52 0.21 0.06 16 28 C 0.13 4.32 6.61 86.50 0.57 4.90 16 29 C 0.05 1.81 5.27 86.54 0.46 2.27 16 30 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 32 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 33 H 0.12 3.51 7.97 -2.39 -0.02 3.49 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 2.27 7.99 -2.39 -0.02 2.25 16 36 H 0.15 3.31 3.82 -73.30 -0.28 3.03 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.09 2.99 7.09 -2.39 -0.02 2.97 16 46 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.08 3.51 5.76 -2.39 -0.01 3.49 16 Total: -1.00 -79.23 379.11 -2.22 -81.45 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -1.94 Total: 30.38 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 6.27 Total: 32.19 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -8.47 Total: -133.75 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.11 Total: -55.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -79.23 -2.22 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113059897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.230 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds