Wall clock time and date at job start Wed Apr 1 2020 04:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00638 * 2 1 4 4 H 1.48495 * 109.47587 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47092 * 300.00245 * 3 2 1 6 6 H 1.48502 * 109.47041 * 59.99806 * 3 2 1 7 7 C 1.38953 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99638 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99982 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99759 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00417 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47428 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00156 * 169.99915 * 13 12 10 15 15 C 1.53241 * 109.33973 * 187.25232 * 14 13 12 16 16 N 1.47075 * 108.52064 * 306.17201 * 15 14 13 17 17 C 1.34780 * 120.87669 * 231.18923 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 17 22 22 C 1.38595 * 120.80304 * 269.72551 * 21 20 19 23 23 N 1.32336 * 119.10606 * 179.71903 * 22 21 20 24 24 C 1.31792 * 120.81706 * 0.56085 * 23 22 21 25 25 N 1.31795 * 121.75201 * 359.70951 * 24 23 22 26 26 C 1.32330 * 120.82194 * 0.02562 * 25 24 23 27 27 C 1.47074 * 118.24014 * 51.45789 * 16 15 14 28 28 C 1.46904 * 110.99901 * 294.29982 * 13 12 10 29 29 H 0.97005 * 119.99850 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00521 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.46875 * 59.99371 * 12 10 9 32 32 H 1.08997 * 109.46849 * 300.00140 * 12 10 9 33 33 H 1.09001 * 109.49120 * 67.28868 * 14 13 12 34 34 H 1.09003 * 109.48945 * 307.21315 * 14 13 12 35 35 H 1.09003 * 109.62612 * 186.45868 * 15 14 13 36 36 H 1.09003 * 109.62821 * 65.87958 * 15 14 13 37 37 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 38 38 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 39 39 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 40 40 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 41 41 H 1.08001 * 120.44567 * 359.97438 * 22 21 20 42 42 H 1.07995 * 119.12460 * 179.73044 * 24 23 22 43 43 H 1.08001 * 120.44769 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.63016 * 68.25422 * 27 16 15 45 45 H 1.09001 * 109.62513 * 188.83332 * 27 16 15 46 46 H 1.08997 * 109.49121 * 292.70801 * 28 13 12 47 47 H 1.08999 * 109.49142 * 52.78600 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.5135 -7.2575 0.2360 15 6 2.5560 -8.3673 0.4082 16 7 3.4538 -8.3498 -0.7566 17 6 3.7039 -9.4757 -1.4540 18 8 3.1864 -10.5215 -1.1234 19 6 4.6276 -9.4352 -2.6441 20 6 4.7394 -10.8353 -3.2507 21 6 5.6626 -10.7948 -4.4411 22 6 5.1704 -10.5475 -5.7129 23 7 6.0120 -10.5139 -6.7336 24 6 7.3007 -10.7228 -6.5533 25 7 7.8035 -10.9662 -5.3596 26 6 7.0236 -11.0100 -4.2914 27 6 4.0760 -7.0725 -1.1365 28 6 2.9690 -6.0125 -1.2516 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6171 -4.9205 -0.8913 32 1 0.6165 -4.9209 0.8886 33 1 0.8718 -7.4898 -0.6140 34 1 0.9083 -7.1834 1.1396 35 1 2.0553 -9.3335 0.4703 36 1 3.1317 -8.1910 1.3169 37 1 4.2298 -8.7466 -3.3895 38 1 5.6142 -9.0972 -2.3270 39 1 5.1375 -11.5236 -2.5051 40 1 3.7531 -11.1739 -3.5677 41 1 4.1147 -10.3804 -5.8682 42 1 7.9623 -10.6933 -7.4063 43 1 7.4421 -11.2096 -3.3160 44 1 4.7950 -6.7742 -0.3736 45 1 4.5808 -7.1823 -2.0964 46 1 2.3071 -6.2622 -2.0808 47 1 3.4195 -5.0355 -1.4269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113102724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:09 Heat of formation + Delta-G solvation = -11.194350 kcal Electronic energy + Delta-G solvation = -29505.957378 eV Core-core repulsion = 25303.084832 eV Total energy + Delta-G solvation = -4202.872547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44373 -40.35719 -38.77218 -37.37289 -35.19285 -34.59909 -34.09045 -33.83424 -31.57736 -31.31820 -30.46039 -28.86692 -26.33988 -25.39358 -25.00111 -23.90618 -23.72321 -22.48372 -21.02274 -19.34110 -18.93572 -18.04646 -18.01765 -17.94710 -17.41650 -16.31396 -15.95199 -15.89062 -15.14871 -15.10819 -15.00378 -14.75014 -14.53457 -14.34990 -14.06698 -13.99021 -13.94959 -13.67282 -13.61772 -13.59331 -12.84826 -12.70465 -12.38180 -12.01966 -11.69454 -11.61554 -11.57049 -11.34247 -11.26985 -11.22240 -11.20501 -11.18704 -10.89155 -10.38817 -10.28117 -10.06548 -9.72775 -9.61361 -9.54568 -8.94956 -8.44907 -8.05285 -7.96166 -6.47556 -3.88539 0.44836 0.66044 2.42582 2.78857 3.11991 3.23289 3.29823 3.36679 3.74978 3.81463 3.81752 3.87400 4.09099 4.17065 4.17619 4.36074 4.52528 4.62439 4.81258 4.81989 4.92289 4.99085 5.05148 5.12554 5.17857 5.19464 5.27547 5.28497 5.36135 5.44908 5.63010 5.63492 5.66186 5.73360 5.78787 5.83082 5.97596 6.05401 6.10197 6.18989 6.38506 6.53393 7.05458 7.22824 7.29186 7.49833 7.66021 7.96541 8.00176 8.54775 9.11952 9.47823 9.98665 10.70053 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.001949 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.410805 B =14360.253917 C =15841.818115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.515 5.515 14 C 0.040 3.960 15 C 0.118 3.882 16 N -0.611 5.611 17 C 0.516 3.484 18 O -0.549 6.549 19 C -0.137 4.137 20 C -0.055 4.055 21 C -0.186 4.186 22 C 0.151 3.849 23 N -0.518 5.518 24 C 0.286 3.714 25 N -0.519 5.519 26 C 0.151 3.849 27 C 0.113 3.887 28 C 0.038 3.962 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.168 0.832 42 H 0.196 0.804 43 H 0.168 0.832 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.027 0.973 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -20.723 -7.128 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.089 4.089 15 C -0.004 4.004 16 N -0.345 5.345 17 C 0.304 3.696 18 O -0.427 6.427 19 C -0.177 4.177 20 C -0.094 4.094 21 C -0.190 4.190 22 C -0.015 4.015 23 N -0.231 5.231 24 C -0.001 4.001 25 N -0.232 5.232 26 C -0.015 4.015 27 C -0.009 4.009 28 C -0.090 4.090 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.185 0.815 42 H 0.212 0.788 43 H 0.185 0.815 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.046 0.954 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.883 -20.995 -7.372 23.606 hybrid contribution -1.452 0.969 0.085 1.747 sum 6.431 -20.026 -7.287 22.260 Atomic orbital electron populations 1.69617 1.05960 1.28132 1.50454 1.25278 0.95643 0.99791 0.97265 0.85800 0.79700 0.81107 0.77740 1.19201 1.20755 1.20728 1.19740 0.93377 0.82136 1.47591 0.87807 1.41886 1.09235 1.04629 1.64131 1.19707 0.88396 0.84503 0.84608 1.90475 1.13639 1.86870 1.55395 1.21850 0.93867 0.91064 1.01672 1.61495 1.25385 1.01499 1.35587 1.22511 0.95420 0.89538 1.01381 1.21704 0.91588 0.99140 0.88003 1.48284 1.46920 1.08902 1.30351 1.20542 0.81918 0.83158 0.83969 1.90687 1.52389 1.30035 1.69595 1.21698 1.00580 0.98895 0.96494 1.20209 0.99062 0.96449 0.93724 1.21734 0.96983 1.02584 0.97699 1.23233 1.00370 0.90338 0.87543 1.68456 1.05131 1.14207 1.35307 1.25006 0.89898 0.90700 0.94542 1.68451 1.40658 1.13968 1.00081 1.23225 0.89580 0.90608 0.98085 1.22032 0.95884 0.81792 1.01216 1.22728 0.95286 1.01504 0.89487 0.91871 0.77479 0.93443 0.89155 0.94725 0.89470 0.88825 0.90551 0.88603 0.88544 0.89382 0.89430 0.81483 0.78787 0.81469 0.89825 0.89746 0.95440 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.44 9.80 7.44 -10.98 -0.08 9.72 16 11 O -0.58 -14.51 13.91 5.54 0.08 -14.43 16 12 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 13 N -0.51 -7.80 4.37 -235.47 -1.03 -8.83 16 14 C 0.04 0.49 5.62 -3.70 -0.02 0.46 16 15 C 0.12 1.35 6.60 -3.60 -0.02 1.33 16 16 N -0.61 -6.86 3.00 -172.19 -0.52 -7.38 16 17 C 0.52 5.58 7.71 -10.98 -0.08 5.49 16 18 O -0.55 -7.53 15.43 5.56 0.09 -7.44 16 19 C -0.14 -0.99 4.05 -27.88 -0.11 -1.10 16 20 C -0.06 -0.37 4.68 -27.89 -0.13 -0.50 16 21 C -0.19 -1.28 5.17 -104.36 -0.54 -1.82 16 22 C 0.15 1.13 11.01 -17.20 -0.19 0.95 16 23 N -0.52 -4.68 10.44 -14.58 -0.15 -4.84 16 24 C 0.29 2.36 12.29 -92.16 -1.13 1.23 16 25 N -0.52 -4.62 10.44 -14.58 -0.15 -4.77 16 26 C 0.15 1.11 11.01 -17.20 -0.19 0.92 16 27 C 0.11 1.27 6.53 -3.37 -0.02 1.25 16 28 C 0.04 0.55 5.27 -3.46 -0.02 0.53 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 30 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 31 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.09 1.36 7.97 -51.93 -0.41 0.94 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.93 7.99 -51.93 -0.41 0.52 16 35 H 0.09 1.06 7.06 -51.93 -0.37 0.69 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.62 7.67 -51.93 -0.40 0.22 16 38 H 0.10 0.59 7.99 -51.93 -0.41 0.18 16 39 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.09 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.12 2.02 5.76 -51.93 -0.30 1.72 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -33.33 389.61 -9.66 -42.99 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.67 Total: 8.72 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -2.81 Total: 11.49 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.18 Total: -62.69 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.33 -9.66 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113102724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.798 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds