Wall clock time and date at job start Wed Apr 1 2020 04:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65596 * 120.00185 * 2 1 4 4 O 1.42101 * 104.27671 * 308.92850 * 3 2 1 5 5 O 1.42101 * 104.27876 * 181.07293 * 3 2 1 6 6 C 1.81398 * 104.44837 * 64.99939 * 3 2 1 7 7 C 1.53001 * 109.47076 * 179.97438 * 6 3 2 8 8 H 1.09003 * 109.49493 * 55.00154 * 7 6 3 9 9 C 1.53040 * 109.52279 * 175.08139 * 7 6 3 10 10 C 1.53039 * 109.53687 * 181.33696 * 9 7 6 11 11 C 1.53202 * 109.31231 * 298.63332 * 10 9 7 12 12 N 1.46925 * 108.77162 * 54.63611 * 11 10 9 13 13 C 1.34773 * 120.62788 * 126.37019 * 12 11 10 14 14 O 1.21592 * 119.99997 * 174.98494 * 13 12 11 15 15 N 1.34782 * 120.00348 * 354.98567 * 13 12 11 16 16 C 1.46495 * 120.00004 * 185.07374 * 15 13 12 17 17 C 1.53006 * 109.46986 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46945 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46724 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00187 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99975 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00263 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46991 * 89.99911 * 23 21 19 25 25 H 1.48504 * 109.47312 * 209.99899 * 23 21 19 26 26 H 1.48496 * 109.47122 * 329.99909 * 23 21 19 27 27 C 1.46929 * 118.73987 * 306.39142 * 12 11 10 28 28 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47327 * 299.99684 * 1 2 3 30 30 H 1.09005 * 109.47437 * 59.99976 * 1 2 3 31 31 H 0.97008 * 119.99741 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47183 * 60.00178 * 6 3 2 33 33 H 1.08998 * 109.47536 * 300.00026 * 6 3 2 34 34 H 1.08998 * 109.46202 * 301.35452 * 9 7 6 35 35 H 1.09003 * 109.45963 * 61.31689 * 9 7 6 36 36 H 1.08998 * 109.49924 * 178.68745 * 10 9 7 37 37 H 1.08995 * 109.52878 * 58.60062 * 10 9 7 38 38 H 1.08995 * 109.58714 * 294.85197 * 11 10 9 39 39 H 1.09000 * 109.58579 * 174.42511 * 11 10 9 40 40 H 0.96993 * 119.99753 * 5.07489 * 15 13 12 41 41 H 1.09003 * 109.47056 * 299.99710 * 16 15 13 42 42 H 1.08999 * 109.47322 * 60.00027 * 16 15 13 43 43 H 1.09003 * 109.46684 * 299.99569 * 17 16 15 44 44 H 1.08999 * 109.47369 * 59.99687 * 17 16 15 45 45 H 1.08991 * 109.47169 * 299.99683 * 18 17 16 46 46 H 1.09001 * 109.46837 * 59.99849 * 18 17 16 47 47 H 0.97000 * 120.00474 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58523 * 293.82309 * 27 12 11 49 49 H 1.08997 * 109.58523 * 173.39894 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0258 6 6 1.8764 2.1973 1.5920 7 6 2.5900 3.5452 1.7137 8 1 2.3400 4.1680 0.8548 9 6 2.1444 4.2455 2.9994 10 6 2.8327 5.6084 3.1048 11 6 4.3501 5.4063 3.1651 12 7 4.7673 4.6077 2.0046 13 6 5.7392 5.0484 1.1814 14 8 6.1390 4.3391 0.2784 15 7 6.2679 6.2754 1.3591 16 6 7.2437 6.7985 0.3998 17 6 7.6826 8.1993 0.8312 18 6 8.7022 8.7453 -0.1704 19 6 9.1340 10.1253 0.2542 20 1 8.7221 10.5687 1.1487 21 6 10.0541 10.8223 -0.4998 22 7 10.5546 10.2830 -1.5899 23 14 10.5888 12.5330 0.0261 24 1 11.7704 12.4295 0.9196 25 1 10.9446 13.3314 -1.1745 26 1 9.4767 13.1983 0.7511 27 6 4.1045 3.3198 1.7582 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 2.1958 1.5430 2.4033 33 1 0.7987 2.3496 1.6510 34 1 1.0636 4.3850 2.9812 35 1 2.4170 3.6336 3.8594 36 1 2.4972 6.1165 4.0088 37 1 2.5805 6.2122 2.2331 38 1 4.6126 4.8812 4.0834 39 1 4.8490 6.3752 3.1404 40 1 6.0024 6.8120 2.1222 41 1 8.1116 6.1397 0.3685 42 1 6.7895 6.8483 -0.5899 43 1 6.8149 8.8582 0.8627 44 1 8.1369 8.1491 1.8207 45 1 9.5697 8.0863 -0.2016 46 1 8.2482 8.7955 -1.1601 47 1 11.2022 10.7731 -2.1203 48 1 4.3470 2.6244 2.5619 49 1 4.4414 2.9118 0.8053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119083165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:46 Heat of formation + Delta-G solvation = -111.707080 kcal Electronic energy + Delta-G solvation = -28927.850808 eV Core-core repulsion = 24823.770903 eV Total energy + Delta-G solvation = -4104.079906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48520 -38.12416 -37.43621 -36.27300 -35.47150 -35.36936 -34.36227 -33.14114 -32.22836 -31.04481 -27.88649 -26.77939 -26.49652 -25.32214 -23.02964 -22.87055 -21.07127 -20.57669 -19.78981 -19.42891 -18.21614 -17.94977 -17.14963 -16.65338 -16.41169 -16.09370 -15.70268 -15.48370 -14.97027 -14.75868 -14.57379 -14.38716 -14.34463 -14.16191 -13.77891 -13.55720 -13.46615 -13.26112 -13.11379 -12.65214 -12.33523 -12.29856 -12.23887 -12.05077 -11.82166 -11.70693 -11.67298 -11.61751 -11.34158 -11.19119 -10.88049 -10.68832 -10.64327 -10.56560 -10.04494 -9.98721 -9.82265 -9.40633 -9.09160 -8.93792 -8.48542 -8.34093 -5.98562 -4.01672 -0.15933 2.31662 2.62316 3.32710 3.33433 3.38103 3.38950 3.41634 3.73765 3.86630 4.04878 4.21455 4.29435 4.43957 4.46817 4.54322 4.61709 4.71525 4.82207 4.89752 5.03593 5.08743 5.19164 5.20400 5.23755 5.36913 5.37006 5.46843 5.47929 5.57908 5.65883 5.76988 5.86120 5.88630 6.23324 6.33577 6.43287 6.58165 6.66879 6.81906 7.04018 7.06435 7.67621 7.80900 8.00515 8.09102 8.41240 8.76194 9.05011 9.62181 11.12700 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.001913 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.216045 B =14636.533673 C =15417.763178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.126 6.126 3 S 2.604 3.396 4 O -0.950 6.950 5 O -0.943 6.943 6 C -0.622 4.622 7 C -0.096 4.096 8 H 0.091 0.909 9 C -0.103 4.103 10 C -0.139 4.139 11 C 0.109 3.891 12 N -0.632 5.632 13 C 0.702 3.298 14 O -0.582 6.582 15 N -0.741 5.741 16 C 0.133 3.867 17 C -0.119 4.119 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.110 3.890 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.392 0.608 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.138 -21.088 13.103 36.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.885 5.885 3 S 2.695 3.305 4 O -0.940 6.940 5 O -0.933 6.933 6 C -0.752 4.752 7 C -0.117 4.117 8 H 0.110 0.890 9 C -0.141 4.141 10 C -0.177 4.177 11 C -0.015 4.015 12 N -0.371 5.371 13 C 0.403 3.597 14 O -0.460 6.460 15 N -0.397 5.397 16 C 0.009 3.991 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.014 4.014 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.228 0.772 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.262 -21.078 11.537 34.864 hybrid contribution -0.083 0.807 1.361 1.584 sum -25.344 -20.271 12.898 34.923 Atomic orbital electron populations 1.21509 0.78911 1.04325 1.01882 1.55488 1.15907 1.24852 1.92294 1.05340 0.74089 0.73952 0.77128 1.93622 1.78867 1.72174 1.49317 1.93670 1.31717 1.80928 1.86952 1.30605 1.11047 1.08900 1.24645 1.21350 0.95411 0.93192 1.01703 0.89028 1.21492 1.00371 0.96084 0.96176 1.21975 0.95021 0.97407 1.03325 1.21671 0.95107 0.95974 0.88745 1.47151 1.39309 1.21752 1.28857 1.15949 0.79598 0.82257 0.81908 1.90953 1.63847 1.56388 1.34764 1.45556 1.47326 1.16201 1.30665 1.21548 0.90432 0.95804 0.91269 1.21886 1.00360 0.92376 1.01138 1.19030 0.93051 0.95629 0.93700 1.21199 1.24224 1.00926 1.09670 0.92679 1.25036 0.96353 0.98139 0.94999 1.69968 1.30049 1.37872 1.15307 0.86579 0.78895 0.84368 0.78031 1.20693 1.21225 1.19943 1.21864 0.89453 0.85149 1.04961 0.89899 0.92362 0.91271 0.74776 0.84443 0.84611 0.91128 0.91145 0.90107 0.90887 0.91143 0.89877 0.77151 0.91775 0.91924 0.92829 0.92809 0.96194 0.96205 0.92936 0.90770 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.03 59.85 0.66 0.91 16 2 N -1.13 -5.90 6.07 -16.63 -0.10 -6.00 16 3 S 2.60 23.01 5.11 -107.50 -0.55 22.46 16 4 O -0.95 -12.16 17.73 -57.54 -1.02 -13.18 16 5 O -0.94 -12.02 15.95 -57.54 -0.92 -12.94 16 6 C -0.62 -3.17 5.47 37.16 0.20 -2.97 16 7 C -0.10 -0.76 2.33 -90.50 -0.21 -0.97 16 8 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.10 -0.58 5.17 -26.69 -0.14 -0.72 16 10 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 11 C 0.11 0.90 6.43 -3.71 -0.02 0.88 16 12 N -0.63 -7.90 2.97 -178.49 -0.53 -8.43 16 13 C 0.70 11.89 8.30 -86.92 -0.72 11.17 16 14 O -0.58 -12.54 15.79 5.28 0.08 -12.46 16 15 N -0.74 -11.60 5.47 -65.22 -0.36 -11.96 16 16 C 0.13 2.49 5.68 -4.04 -0.02 2.46 16 17 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 23 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.11 1.24 5.20 -3.71 -0.02 1.23 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.06 0.05 7.73 -51.93 -0.40 -0.35 16 30 H 0.07 0.29 8.04 -51.93 -0.42 -0.13 16 31 H 0.42 1.61 8.92 -34.47 -0.31 1.30 16 32 H 0.14 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.14 0.32 7.77 -51.93 -0.40 -0.09 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.65 5.57 -51.93 -0.29 0.36 16 40 H 0.39 4.91 5.93 -40.82 -0.24 4.67 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.11 1.59 4.89 -51.93 -0.25 1.34 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -40.14 400.78 -10.96 -51.10 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.20 Total: -0.23 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.12 Total: -4.68 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.25 Total: -52.79 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.85 Total: -38.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.55 Total: 22.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.14 -10.96 -51.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119083165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.608 kcal (2) G-P(sol) polarization free energy of solvation -40.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds