Wall clock time and date at job start Wed Apr 1 2020 04:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65596 * 120.00185 * 2 1 4 4 O 1.42101 * 104.27671 * 308.92850 * 3 2 1 5 5 O 1.42101 * 104.27876 * 181.07293 * 3 2 1 6 6 C 1.81398 * 104.44837 * 64.99939 * 3 2 1 7 7 C 1.53001 * 109.47076 * 179.97438 * 6 3 2 8 8 H 1.09003 * 109.49493 * 55.00154 * 7 6 3 9 9 C 1.53040 * 109.52279 * 175.08139 * 7 6 3 10 10 C 1.53039 * 109.53687 * 181.33696 * 9 7 6 11 11 C 1.53202 * 109.31231 * 298.63332 * 10 9 7 12 12 N 1.46925 * 108.77162 * 54.63611 * 11 10 9 13 13 C 1.34773 * 120.62788 * 126.37019 * 12 11 10 14 14 O 1.21592 * 119.99997 * 174.98494 * 13 12 11 15 15 N 1.34782 * 120.00348 * 354.98567 * 13 12 11 16 16 C 1.46495 * 120.00004 * 185.07374 * 15 13 12 17 17 C 1.53006 * 109.46986 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46945 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46724 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00187 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99975 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00263 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46991 * 89.99911 * 23 21 19 25 25 H 1.48504 * 109.47312 * 209.99899 * 23 21 19 26 26 H 1.48496 * 109.47122 * 329.99909 * 23 21 19 27 27 C 1.46929 * 118.73987 * 306.39142 * 12 11 10 28 28 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47327 * 299.99684 * 1 2 3 30 30 H 1.09005 * 109.47437 * 59.99976 * 1 2 3 31 31 H 0.97008 * 119.99741 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47183 * 60.00178 * 6 3 2 33 33 H 1.08998 * 109.47536 * 300.00026 * 6 3 2 34 34 H 1.08998 * 109.46202 * 301.35452 * 9 7 6 35 35 H 1.09003 * 109.45963 * 61.31689 * 9 7 6 36 36 H 1.08998 * 109.49924 * 178.68745 * 10 9 7 37 37 H 1.08995 * 109.52878 * 58.60062 * 10 9 7 38 38 H 1.08995 * 109.58714 * 294.85197 * 11 10 9 39 39 H 1.09000 * 109.58579 * 174.42511 * 11 10 9 40 40 H 0.96993 * 119.99753 * 5.07489 * 15 13 12 41 41 H 1.09003 * 109.47056 * 299.99710 * 16 15 13 42 42 H 1.08999 * 109.47322 * 60.00027 * 16 15 13 43 43 H 1.09003 * 109.46684 * 299.99569 * 17 16 15 44 44 H 1.08999 * 109.47369 * 59.99687 * 17 16 15 45 45 H 1.08991 * 109.47169 * 299.99683 * 18 17 16 46 46 H 1.09001 * 109.46837 * 59.99849 * 18 17 16 47 47 H 0.97000 * 120.00474 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58523 * 293.82309 * 27 12 11 49 49 H 1.08997 * 109.58523 * 173.39894 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0258 6 6 1.8764 2.1973 1.5920 7 6 2.5900 3.5452 1.7137 8 1 2.3400 4.1680 0.8548 9 6 2.1444 4.2455 2.9994 10 6 2.8327 5.6084 3.1048 11 6 4.3501 5.4063 3.1651 12 7 4.7673 4.6077 2.0046 13 6 5.7392 5.0484 1.1814 14 8 6.1390 4.3391 0.2784 15 7 6.2679 6.2754 1.3591 16 6 7.2437 6.7985 0.3998 17 6 7.6826 8.1993 0.8312 18 6 8.7022 8.7453 -0.1704 19 6 9.1340 10.1253 0.2542 20 1 8.7221 10.5687 1.1487 21 6 10.0541 10.8223 -0.4998 22 7 10.5546 10.2830 -1.5899 23 14 10.5888 12.5330 0.0261 24 1 11.7704 12.4295 0.9196 25 1 10.9446 13.3314 -1.1745 26 1 9.4767 13.1983 0.7511 27 6 4.1045 3.3198 1.7582 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 2.1958 1.5430 2.4033 33 1 0.7987 2.3496 1.6510 34 1 1.0636 4.3850 2.9812 35 1 2.4170 3.6336 3.8594 36 1 2.4972 6.1165 4.0088 37 1 2.5805 6.2122 2.2331 38 1 4.6126 4.8812 4.0834 39 1 4.8490 6.3752 3.1404 40 1 6.0024 6.8120 2.1222 41 1 8.1116 6.1397 0.3685 42 1 6.7895 6.8483 -0.5899 43 1 6.8149 8.8582 0.8627 44 1 8.1369 8.1491 1.8207 45 1 9.5697 8.0863 -0.2016 46 1 8.2482 8.7955 -1.1601 47 1 11.2022 10.7731 -2.1203 48 1 4.3470 2.6244 2.5619 49 1 4.4414 2.9118 0.8053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119083165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:45 Heat of formation + Delta-G solvation = -144.453122 kcal Electronic energy + Delta-G solvation = -28929.270783 eV Core-core repulsion = 24823.770903 eV Total energy + Delta-G solvation = -4105.499881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57875 -39.08725 -38.23925 -37.07015 -36.99953 -35.86014 -35.49402 -34.85055 -32.91639 -32.83526 -29.00319 -28.05822 -26.79524 -26.43341 -24.70465 -23.60820 -22.32846 -21.91783 -20.53943 -20.37827 -19.20800 -18.70395 -18.47230 -17.73735 -17.47774 -17.14792 -16.90045 -16.50926 -16.18203 -15.83865 -15.62195 -15.53606 -15.40871 -14.74881 -14.53975 -14.46686 -14.25333 -14.21878 -13.92914 -13.74766 -13.64843 -13.47337 -13.38394 -13.13895 -12.99332 -12.74853 -12.56771 -12.49686 -12.40760 -12.35590 -12.24224 -11.89851 -11.81377 -11.68653 -11.56254 -11.28966 -11.26348 -11.12018 -10.55360 -10.41925 -10.28840 -9.55753 -8.18836 -6.30831 -0.77890 1.41657 1.43822 1.51427 1.55054 1.78882 2.03374 2.42193 2.78445 2.87825 3.14703 3.18215 3.42338 3.54622 3.70631 4.01659 4.04400 4.14335 4.19203 4.20485 4.22183 4.31851 4.49432 4.52929 4.56306 4.59610 4.68978 4.74481 4.84752 4.91262 4.93223 4.93805 4.99331 5.02669 5.09258 5.15357 5.19182 5.41539 5.43645 5.49018 5.52971 5.69875 5.83214 5.84750 6.09744 6.22003 6.85840 6.91659 7.38665 7.47971 8.93436 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.001913 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.216045 B =14636.533673 C =15417.763178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -1.119 6.119 3 S 2.591 3.409 4 O -1.006 7.006 5 O -0.996 6.996 6 C -0.591 4.591 7 C -0.098 4.098 8 H 0.070 0.930 9 C -0.098 4.098 10 C -0.137 4.137 11 C 0.098 3.902 12 N -0.625 5.625 13 C 0.692 3.308 14 O -0.640 6.640 15 N -0.728 5.728 16 C 0.147 3.853 17 C -0.098 4.098 18 C 0.023 3.977 19 C -0.540 4.540 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.259 1.259 27 C 0.096 3.904 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.424 0.576 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.411 0.589 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.070 0.930 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 48 H 0.099 0.901 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.990 -20.436 17.612 39.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.880 5.880 3 S 2.687 3.313 4 O -0.996 6.996 5 O -0.986 6.986 6 C -0.725 4.725 7 C -0.119 4.119 8 H 0.088 0.912 9 C -0.137 4.137 10 C -0.175 4.175 11 C -0.024 4.024 12 N -0.362 5.362 13 C 0.394 3.606 14 O -0.522 6.522 15 N -0.386 5.386 16 C 0.022 3.978 17 C -0.136 4.136 18 C -0.015 4.015 19 C -0.578 4.578 20 H 0.087 0.913 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.183 1.183 27 C -0.027 4.027 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.259 0.741 32 H 0.193 0.807 33 H 0.195 0.805 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.010 0.990 46 H 0.009 0.991 47 H 0.072 0.928 48 H 0.117 0.883 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.166 -20.446 16.075 38.338 hybrid contribution 0.745 0.534 0.000 0.917 sum -27.421 -19.912 16.075 37.507 Atomic orbital electron populations 1.21831 0.77231 1.06131 1.02681 1.55134 1.16839 1.23696 1.92354 1.05276 0.73076 0.74417 0.78485 1.93551 1.79254 1.73549 1.53202 1.93601 1.34953 1.81864 1.88219 1.30371 1.13344 1.07364 1.21426 1.21363 0.93012 0.94696 1.02809 0.91172 1.21558 1.01734 0.95389 0.94970 1.22003 0.93284 0.98163 1.04075 1.22087 0.96852 0.95783 0.87674 1.47238 1.37625 1.22391 1.28915 1.16219 0.80377 0.82033 0.82010 1.90916 1.65905 1.57920 1.37431 1.45181 1.46601 1.16222 1.30625 1.21119 0.90397 0.94992 0.91298 1.21579 0.99317 0.92730 0.99945 1.18949 0.93402 0.95135 0.94013 1.21669 1.24279 1.01729 1.10085 0.91292 1.26077 0.96437 1.02945 0.94909 1.70128 1.30843 1.39911 1.16754 0.85365 0.78903 0.78555 0.77699 1.19784 1.21127 1.18258 1.22092 0.91866 0.84922 1.03831 0.87620 0.89185 0.92977 0.74056 0.80696 0.80467 0.88604 0.88716 0.87059 0.92543 0.88560 0.89605 0.74973 0.93669 0.93799 0.91183 0.91141 0.99045 0.99085 0.92844 0.88297 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.03 127.77 1.41 1.69 16 2 N -1.12 -10.92 6.07 -206.54 -1.25 -12.17 16 3 S 2.59 47.17 5.11 -56.49 -0.29 46.88 16 4 O -1.01 -27.77 17.73 -127.65 -2.26 -30.04 16 5 O -1.00 -27.72 15.95 -127.65 -2.04 -29.75 16 6 C -0.59 -4.07 5.47 71.98 0.39 -3.68 16 7 C -0.10 -1.34 2.33 -10.72 -0.03 -1.36 16 8 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 9 C -0.10 -0.62 5.17 30.62 0.16 -0.46 16 10 C -0.14 -1.21 6.08 30.68 0.19 -1.03 16 11 C 0.10 1.32 6.43 86.37 0.56 1.87 16 12 N -0.62 -15.18 2.97 -836.89 -2.49 -17.66 16 13 C 0.69 24.25 8.30 179.05 1.49 25.73 16 14 O -0.64 -29.62 15.79 -4.01 -0.06 -29.69 16 15 N -0.73 -22.97 5.47 -478.52 -2.62 -25.58 16 16 C 0.15 5.73 5.68 86.38 0.49 6.22 16 17 C -0.10 -3.93 5.27 30.60 0.16 -3.77 16 18 C 0.02 1.22 4.97 29.85 0.15 1.37 16 19 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 20 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 21 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 22 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 23 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 27 C 0.10 2.13 5.20 86.36 0.45 2.58 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.09 -0.19 7.73 -2.39 -0.02 -0.21 16 30 H 0.05 0.41 8.04 -2.38 -0.02 0.39 16 31 H 0.42 3.14 8.92 -96.74 -0.86 2.28 16 32 H 0.18 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.18 -0.14 7.77 -2.39 -0.02 -0.16 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.09 5.57 -2.39 -0.01 1.08 16 40 H 0.41 9.70 5.93 -92.71 -0.55 9.15 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 48 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.07 2.12 4.89 -2.39 -0.01 2.11 16 Total: -1.00 -95.78 400.78 -3.05 -98.83 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.46 Total: 12.02 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.11 Total: -1.09 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.07 Total: -113.55 kcal Atomic # 8 Polarization: -85.11 SS G_CDS: -4.36 Total: -89.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.29 Total: 46.88 kcal Total: -95.78 -3.05 -98.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119083165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.624 kcal (2) G-P(sol) polarization free energy of solvation -95.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds