Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.53947 * 113.57905 * 252.72172 * 14 13 12 16 16 C 1.52910 * 86.78050 * 220.66422 * 15 14 13 17 17 C 1.52905 * 88.04283 * 24.89909 * 16 15 14 18 18 C 1.52910 * 121.13499 * 150.61962 * 16 15 14 19 19 C 1.53946 * 86.78632 * 100.82143 * 18 16 15 20 20 N 1.46496 * 113.58514 * 139.33630 * 19 18 16 21 21 C 1.34772 * 120.00113 * 107.27619 * 20 19 18 22 22 O 1.21599 * 120.00066 * 0.02562 * 21 20 19 23 23 C 1.47430 * 120.00044 * 180.02562 * 21 20 19 24 24 C 1.41300 * 126.41332 * 0.02562 * 23 21 20 25 25 N 1.30446 * 108.02013 * 179.97438 * 24 23 21 26 26 N 1.39934 * 108.89957 * 359.97438 * 25 24 23 27 27 H 0.97003 * 125.75317 * 179.97438 * 26 25 24 28 28 C 1.34264 * 108.49097 * 359.75444 * 26 25 24 29 29 C 1.52908 * 121.13875 * 259.17529 * 16 15 14 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 35 35 H 1.09002 * 112.82082 * 23.91127 * 14 13 12 36 36 H 1.09000 * 113.66849 * 335.13520 * 15 14 13 37 37 H 1.08998 * 113.66423 * 106.19231 * 15 14 13 38 38 H 1.08993 * 113.65988 * 220.62621 * 17 16 15 39 39 H 1.08999 * 113.66243 * 89.57520 * 17 16 15 40 40 H 1.08999 * 113.66166 * 215.29288 * 18 16 15 41 41 H 1.09001 * 113.66107 * 346.34440 * 18 16 15 42 42 H 1.09006 * 113.58015 * 270.13420 * 19 18 16 43 43 H 0.97004 * 119.99651 * 287.28602 * 20 19 18 44 44 H 1.07999 * 125.98731 * 359.97438 * 24 23 21 45 45 H 1.07993 * 126.28859 * 180.24613 * 28 26 25 46 46 H 1.09005 * 113.66037 * 13.65509 * 29 16 15 47 47 H 1.08999 * 113.66562 * 144.61376 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 1.5736 -8.0121 1.3455 16 6 1.7774 -9.2909 0.5323 17 6 2.3287 -8.4216 -0.5983 18 6 2.5825 -10.4641 1.0922 19 6 1.2303 -11.1261 1.4138 20 7 1.1998 -12.5635 1.1329 21 6 1.2064 -13.4490 2.1489 22 8 1.2371 -13.0548 3.2988 23 6 1.1763 -14.8956 1.8661 24 6 1.1399 -15.5001 0.5894 25 7 1.1221 -16.7938 0.7559 26 7 1.1465 -17.0748 2.1265 27 1 1.1400 -17.9597 2.5238 28 6 1.1853 -15.9133 2.7987 29 6 0.6246 -10.2659 0.2899 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 2.8335 -5.9120 -0.7829 35 1 0.4893 -7.2046 -0.4085 36 1 2.4378 -7.7355 1.9495 37 1 0.6396 -7.9950 1.9071 38 1 1.9979 -8.7316 -1.5895 39 1 3.4051 -8.2600 -0.5408 40 1 3.1618 -10.9967 0.3380 41 1 3.1671 -10.2110 1.9767 42 1 0.8490 -10.8798 2.4049 43 1 1.1751 -12.8779 0.2155 44 1 1.1288 -14.9819 -0.3580 45 1 1.2151 -15.7965 3.8719 46 1 -0.3549 -9.8544 0.5335 47 1 0.6527 -10.7415 -0.6904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120682056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = 46.057886 kcal Electronic energy + Delta-G solvation = -28436.286959 eV Core-core repulsion = 24235.897055 eV Total energy + Delta-G solvation = -4200.389904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87396 -40.86422 -39.14455 -38.15477 -36.31260 -34.15913 -33.66733 -32.47647 -31.71469 -31.14211 -30.56777 -26.65311 -26.09474 -25.83777 -24.65025 -23.86036 -22.52831 -22.04353 -20.57057 -20.45963 -19.28291 -19.12463 -18.00507 -17.81485 -16.59483 -16.53901 -16.16980 -15.68305 -15.45415 -15.26852 -15.16483 -14.92735 -14.64108 -14.44368 -14.38501 -13.93182 -13.53560 -13.39749 -13.21570 -12.92972 -12.79434 -12.50008 -12.23198 -12.09975 -11.73719 -11.66294 -11.51009 -11.31017 -11.03418 -10.99465 -10.62756 -10.45239 -10.37107 -10.25020 -10.19195 -10.15751 -10.00910 -9.48071 -9.46980 -9.16233 -8.39582 -8.00750 -7.92220 -6.38920 -3.79641 1.02109 1.63468 2.12407 2.95152 3.08548 3.19937 3.28399 3.34683 3.94823 4.06319 4.10941 4.22520 4.24290 4.27328 4.40431 4.52222 4.58914 4.64248 4.75016 4.78328 4.89630 5.09326 5.23755 5.28158 5.28667 5.34320 5.42886 5.51668 5.65188 5.74135 5.77942 5.81024 5.84252 5.87316 5.91455 6.02721 6.05349 6.25815 6.30077 6.36472 6.44031 6.49039 6.87990 7.24806 7.36592 7.57907 7.74080 7.97869 8.09694 8.64692 9.20950 9.57820 10.09506 10.78888 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.045748 B = 0.001332 C = 0.001326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.897548 B =21020.984925 C =21106.207403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.062 3.938 15 C -0.101 4.101 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.134 4.134 19 C 0.127 3.873 20 N -0.716 5.716 21 C 0.595 3.405 22 O -0.548 6.548 23 C -0.295 4.295 24 C 0.084 3.916 25 N -0.295 5.295 26 N -0.464 5.464 27 H 0.446 0.554 28 C 0.135 3.865 29 C -0.121 4.121 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.350 0.650 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.398 0.602 44 H 0.191 0.809 45 H 0.193 0.807 46 H 0.077 0.923 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -33.538 0.819 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.049 4.049 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.173 4.173 19 C 0.022 3.978 20 N -0.365 5.365 21 C 0.382 3.618 22 O -0.426 6.426 23 C -0.310 4.310 24 C -0.104 4.104 25 N -0.116 5.116 26 N -0.169 5.169 27 H 0.290 0.710 28 C -0.018 4.018 29 C -0.160 4.160 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.233 0.767 44 H 0.207 0.793 45 H 0.210 0.790 46 H 0.095 0.905 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.557 -34.181 1.723 34.260 hybrid contribution -0.619 1.042 -0.786 1.445 sum -2.176 -33.139 0.937 33.224 Atomic orbital electron populations 1.69616 1.05931 1.28100 1.50748 1.25250 0.95622 0.99685 0.97371 0.85862 0.79269 0.80848 0.78339 1.20458 1.20938 1.19403 1.19709 0.93379 0.82285 1.47500 0.87943 1.41870 1.09186 1.04617 1.64463 1.19862 0.88401 0.84777 0.84323 1.90520 1.13792 1.87104 1.55362 1.21729 0.94450 0.91053 1.01028 1.60214 1.18366 0.99551 1.50783 1.23008 0.96535 0.88281 0.97065 1.22832 1.02590 0.92037 0.96442 1.22070 0.96950 0.92781 0.98608 1.23031 1.00797 0.95364 0.97039 1.23274 0.96625 0.96055 1.01362 1.22560 0.97278 0.77713 1.00217 1.45773 1.75471 1.06298 1.08993 1.17254 0.75280 0.84319 0.84935 1.90793 1.50826 1.80322 1.20708 1.20361 1.23334 0.94297 0.93003 1.24112 0.96939 0.90984 0.98395 1.77185 1.24510 1.16801 0.93118 1.46272 1.56962 1.08599 1.05066 0.70959 1.23109 0.94284 0.84987 0.99433 1.23089 0.98299 0.96019 0.98546 0.91917 0.77477 0.89677 0.93984 0.83018 0.91261 0.88640 0.91651 0.91604 0.88968 0.89743 0.90695 0.86575 0.76726 0.79262 0.79046 0.90467 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 10 C 0.44 10.54 7.82 -10.98 -0.09 10.45 16 11 O -0.58 -16.03 15.78 5.55 0.09 -15.95 16 12 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 13 N -0.66 -10.58 6.18 -106.95 -0.66 -11.24 16 14 C 0.06 0.74 4.14 -66.73 -0.28 0.46 16 15 C -0.10 -1.13 7.64 -26.28 -0.20 -1.33 16 16 C -0.10 -0.90 1.11 -154.71 -0.17 -1.07 16 17 C -0.12 -1.22 7.41 -26.29 -0.19 -1.41 16 18 C -0.13 -1.13 7.64 -26.28 -0.20 -1.33 16 19 C 0.13 1.03 4.24 -66.95 -0.28 0.74 16 20 N -0.72 -4.95 5.35 -53.93 -0.29 -5.24 16 21 C 0.59 5.46 7.81 -12.52 -0.10 5.36 16 22 O -0.55 -7.13 16.50 5.28 0.09 -7.04 16 23 C -0.29 -2.09 6.13 -105.06 -0.64 -2.73 16 24 C 0.08 0.49 11.50 -16.98 -0.20 0.29 16 25 N -0.30 -2.04 12.63 30.86 0.39 -1.65 16 26 N -0.46 -2.08 7.29 30.85 0.22 -1.86 16 27 H 0.45 0.50 8.96 -182.72 -1.64 -1.14 16 28 C 0.13 0.72 11.82 -16.56 -0.20 0.53 16 29 C -0.12 -0.85 7.59 -26.28 -0.20 -1.05 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.35 5.80 8.25 -39.29 -0.32 5.48 16 35 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 1.17 7.47 -51.93 -0.39 0.79 16 43 H 0.40 1.62 7.68 -40.82 -0.31 1.30 16 44 H 0.19 0.47 7.50 -52.49 -0.39 0.08 16 45 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -36.25 399.52 -9.46 -45.71 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.95 Total: 11.88 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.02 Total: 1.70 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.33 Total: -58.50 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.25 -9.46 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120682056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.765 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds