Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99655 * 2 1 4 4 H 1.48500 * 109.47123 * 269.99475 * 3 2 1 5 5 H 1.48498 * 109.47194 * 29.99990 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00060 * 3 2 1 7 7 C 1.38809 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99731 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99894 * 179.97438 * 9 7 2 11 11 C 1.53947 * 113.57904 * 204.99881 * 10 9 7 12 12 C 1.52911 * 86.78316 * 220.66410 * 11 10 9 13 13 C 1.52911 * 88.04227 * 24.89800 * 12 11 10 14 14 C 1.52908 * 121.14051 * 150.61868 * 12 11 10 15 15 C 1.53950 * 86.78122 * 100.81970 * 14 12 11 16 16 N 1.46502 * 113.58235 * 139.34071 * 15 14 12 17 17 C 1.34772 * 120.00432 * 154.99739 * 16 15 14 18 18 O 1.21281 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00214 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47234 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47235 * 179.97438 * 20 19 17 22 22 C 1.38236 * 120.40181 * 89.99831 * 21 20 19 23 23 N 1.31854 * 120.81990 * 179.72258 * 22 21 20 24 24 C 1.31870 * 121.74813 * 0.25858 * 23 22 21 25 25 C 1.38419 * 120.72819 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.44286 * 180.02562 * 25 24 23 27 27 C 1.38589 * 120.41148 * 270.23509 * 21 20 19 28 28 C 1.52910 * 121.13726 * 259.18570 * 12 11 10 29 29 H 0.96996 * 119.99944 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00001 * 359.97438 * 9 7 2 31 31 H 1.08995 * 112.87730 * 336.14365 * 10 9 7 32 32 H 1.08999 * 113.66088 * 106.19390 * 11 10 9 33 33 H 1.08996 * 113.74866 * 335.14772 * 11 10 9 34 34 H 1.08998 * 113.65927 * 89.56995 * 13 12 11 35 35 H 1.09000 * 113.66474 * 220.62583 * 13 12 11 36 36 H 1.09001 * 113.65910 * 346.35336 * 14 12 11 37 37 H 1.08999 * 113.75190 * 215.30193 * 14 12 11 38 38 H 1.09003 * 113.58261 * 270.05410 * 15 14 12 39 39 H 0.97001 * 119.99644 * 335.00424 * 16 15 14 40 40 H 1.09004 * 109.46442 * 59.99902 * 19 17 16 41 41 H 1.08999 * 109.46928 * 300.00462 * 19 17 16 42 42 H 1.09001 * 109.46727 * 60.00002 * 20 19 17 43 43 H 1.08998 * 109.47439 * 300.00642 * 20 19 17 44 44 H 1.08002 * 119.59335 * 0.02562 * 22 21 20 45 45 H 1.08002 * 119.63579 * 180.02562 * 24 23 22 46 46 H 1.08007 * 120.79853 * 0.03408 * 27 21 20 47 47 H 1.08999 * 113.66551 * 144.70737 * 28 12 11 48 48 H 1.08998 * 113.66416 * 13.64598 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0022 11 6 5.5273 -2.3644 0.5989 12 6 5.9800 -3.2900 -0.5309 13 6 4.7835 -2.7956 -1.3446 14 6 7.4011 -3.2178 -1.0908 15 6 7.7110 -4.4542 -0.2275 16 7 8.5541 -5.4440 -0.9025 17 6 9.3117 -6.2906 -0.1775 18 8 9.2951 -6.2334 1.0338 19 6 10.1794 -7.3084 -0.8720 20 6 10.9303 -8.1363 0.1728 21 6 11.7975 -9.1545 -0.5216 22 6 13.0989 -8.8441 -0.8696 23 7 13.8667 -9.7304 -1.4725 24 6 13.4294 -10.9380 -1.7715 25 6 12.1358 -11.3192 -1.4596 26 9 11.6939 -12.5581 -1.7681 27 6 11.2987 -10.4117 -0.8237 28 6 6.2080 -4.7822 -0.2872 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5285 -3.2968 0.4087 32 1 5.6183 -2.8076 1.5906 33 1 5.9537 -1.3630 0.5415 34 1 4.9996 -1.9148 -1.9492 35 1 4.2805 -3.5832 -1.9057 36 1 7.9461 -2.3242 -0.7867 37 1 7.4607 -3.4066 -2.1626 38 1 8.0656 -4.2092 0.7737 39 1 8.5672 -5.4899 -1.8713 40 1 10.8968 -6.7968 -1.5137 41 1 9.5551 -7.9659 -1.4770 42 1 10.2132 -8.6478 0.8148 43 1 11.5546 -7.4785 0.7774 44 1 13.4933 -7.8651 -0.6404 45 1 14.0878 -11.6374 -2.2653 46 1 10.2844 -10.6804 -0.5677 47 1 5.9308 -5.4111 -1.1332 48 1 5.8000 -5.1383 0.6587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122309865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = 0.660182 kcal Electronic energy + Delta-G solvation = -28360.907073 eV Core-core repulsion = 24138.628616 eV Total energy + Delta-G solvation = -4222.278457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.53105 -40.90173 -40.60537 -39.40645 -36.14821 -35.13518 -33.78500 -32.43417 -32.10791 -30.62818 -30.03169 -26.09410 -25.88384 -25.36926 -24.35509 -24.03495 -22.73644 -21.79519 -20.68561 -20.15550 -18.18509 -17.98095 -17.91828 -17.49745 -17.28835 -17.09842 -16.47656 -16.30474 -15.90812 -15.28794 -14.95075 -14.61777 -14.52435 -14.17815 -14.08344 -13.92257 -13.73890 -13.70971 -13.30953 -12.80355 -12.70357 -12.68959 -12.57991 -12.47731 -12.29189 -11.86301 -11.70771 -11.62210 -11.16095 -11.09539 -10.77995 -10.44687 -10.30347 -10.23407 -10.20798 -10.00087 -9.90389 -9.69796 -9.50720 -9.43462 -9.18968 -8.89720 -7.27103 -5.79074 -3.14395 0.28164 0.45350 2.32646 2.83555 3.04151 3.35734 3.38500 3.40059 3.43777 3.82327 3.99945 4.12250 4.25190 4.34749 4.43845 4.46186 4.52629 4.57024 4.58387 4.67064 4.77754 4.80334 4.99221 5.07851 5.19073 5.22939 5.27315 5.36172 5.46372 5.55413 5.58725 5.60406 5.62388 5.73906 5.79089 5.82533 5.96713 6.00759 6.04673 6.09268 6.20989 6.28363 6.39879 6.53004 6.76821 6.98134 7.20075 7.23356 7.93666 7.97928 8.40860 9.18869 9.91584 10.11672 11.39252 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.001403 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.743814 B =19949.950338 C =20333.166515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.130 4.130 15 C 0.122 3.878 16 N -0.719 5.719 17 C 0.512 3.488 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.063 4.063 21 C -0.102 4.102 22 C 0.092 3.908 23 N -0.455 5.455 24 C 0.068 3.932 25 C 0.052 3.948 26 F -0.129 7.129 27 C -0.107 4.107 28 C -0.124 4.124 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.165 0.835 45 H 0.167 0.833 46 H 0.149 0.851 47 H 0.084 0.916 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.503 -20.669 -4.990 35.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.171 4.171 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.169 4.169 15 C 0.018 3.982 16 N -0.369 5.369 17 C 0.298 3.702 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.102 4.102 21 C -0.104 4.104 22 C -0.065 4.065 23 N -0.162 5.162 24 C -0.091 4.091 25 C 0.030 3.970 26 F -0.108 7.108 27 C -0.134 4.134 28 C -0.162 4.162 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.182 0.818 45 H 0.184 0.816 46 H 0.167 0.833 47 H 0.102 0.898 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 29.055 -20.486 -4.316 35.812 hybrid contribution -0.448 0.693 -0.490 0.960 sum 28.607 -19.793 -4.806 35.117 Atomic orbital electron populations 1.69706 1.05123 1.25840 1.57429 1.24691 0.95249 0.97234 1.01956 0.86547 0.79231 0.84989 0.77756 1.21098 1.21708 1.20314 1.19150 0.80741 0.94766 1.43073 0.89160 1.42769 1.04064 1.02051 1.88868 1.21525 0.89428 0.89833 0.92925 1.23235 0.98803 0.98400 0.96657 1.22064 0.93865 0.95032 0.99359 1.23607 0.95415 1.00347 0.99552 1.23177 0.96911 0.97339 0.99441 1.22644 0.89489 0.88140 0.97959 1.46095 1.45102 1.35639 1.10107 1.20607 0.79945 0.81717 0.87913 1.90731 1.66077 1.70871 1.14012 1.21678 0.99297 0.97456 0.99344 1.20320 0.97967 0.95413 0.96475 1.20876 0.96042 0.94847 0.98618 1.22870 0.90057 0.99110 0.94472 1.67772 1.36471 1.01501 1.10438 1.22946 0.92566 0.94497 0.99046 1.18841 0.94966 0.81647 1.01540 1.91546 1.89652 1.38698 1.90894 1.21655 1.00987 0.92942 0.97791 1.23138 0.94997 0.95600 1.02504 0.93055 0.80505 0.89956 0.91710 0.90253 0.90396 0.92256 0.90923 0.89794 0.86818 0.76559 0.88509 0.88633 0.89342 0.89059 0.81787 0.81571 0.83320 0.89757 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -6.93 10.45 -15.06 -0.16 -7.08 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.74 -17.20 5.20 -52.47 -0.27 -17.48 16 10 C 0.17 3.23 4.48 -66.95 -0.30 2.93 16 11 C -0.13 -1.98 7.59 -26.28 -0.20 -2.18 16 12 C -0.10 -1.28 1.11 -154.71 -0.17 -1.45 16 13 C -0.15 -2.31 7.64 -26.28 -0.20 -2.51 16 14 C -0.13 -1.30 7.59 -26.28 -0.20 -1.49 16 15 C 0.12 1.21 4.24 -66.95 -0.28 0.93 16 16 N -0.72 -5.47 5.35 -52.85 -0.28 -5.75 16 17 C 0.51 4.35 7.83 -10.99 -0.09 4.26 16 18 O -0.54 -6.87 15.58 5.56 0.09 -6.79 16 19 C -0.14 -0.64 5.68 -27.88 -0.16 -0.80 16 20 C -0.06 -0.33 4.66 -27.89 -0.13 -0.46 16 21 C -0.10 -0.53 5.15 -104.50 -0.54 -1.07 16 22 C 0.09 0.53 10.86 -17.54 -0.19 0.34 16 23 N -0.45 -3.31 10.36 -13.19 -0.14 -3.45 16 24 C 0.07 0.42 11.17 -17.47 -0.20 0.23 16 25 C 0.05 0.33 7.34 -39.28 -0.29 0.04 16 26 F -0.13 -0.93 17.28 2.25 0.04 -0.89 16 27 C -0.11 -0.59 9.85 -39.22 -0.39 -0.98 16 28 C -0.12 -1.37 7.64 -26.28 -0.20 -1.57 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.36 8.28 5.78 -40.82 -0.24 8.04 16 31 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.11 1.34 7.47 -51.93 -0.39 0.96 16 39 H 0.40 1.97 8.73 -40.82 -0.36 1.61 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 43 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 44 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -34.22 403.10 -9.54 -43.75 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.32 Total: 6.54 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.78 Total: -10.83 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.08 Total: -55.09 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.09 Total: -6.79 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.22 -9.54 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122309865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.413 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds