Wall clock time and date at job start Wed Apr 1 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99655 * 2 1 4 4 H 1.48500 * 109.47123 * 269.99475 * 3 2 1 5 5 H 1.48498 * 109.47194 * 29.99990 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00060 * 3 2 1 7 7 C 1.38809 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99731 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99894 * 179.97438 * 9 7 2 11 11 C 1.53947 * 113.57904 * 204.99881 * 10 9 7 12 12 C 1.52911 * 86.78316 * 220.66410 * 11 10 9 13 13 C 1.52911 * 88.04227 * 24.89800 * 12 11 10 14 14 C 1.52908 * 121.14051 * 150.61868 * 12 11 10 15 15 C 1.53950 * 86.78122 * 100.81970 * 14 12 11 16 16 N 1.46502 * 113.58235 * 139.34071 * 15 14 12 17 17 C 1.34772 * 120.00432 * 154.99739 * 16 15 14 18 18 O 1.21281 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00214 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47234 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47235 * 179.97438 * 20 19 17 22 22 C 1.38236 * 120.40181 * 89.99831 * 21 20 19 23 23 N 1.31854 * 120.81990 * 179.72258 * 22 21 20 24 24 C 1.31870 * 121.74813 * 0.25858 * 23 22 21 25 25 C 1.38419 * 120.72819 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.44286 * 180.02562 * 25 24 23 27 27 C 1.38589 * 120.41148 * 270.23509 * 21 20 19 28 28 C 1.52910 * 121.13726 * 259.18570 * 12 11 10 29 29 H 0.96996 * 119.99944 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00001 * 359.97438 * 9 7 2 31 31 H 1.08995 * 112.87730 * 336.14365 * 10 9 7 32 32 H 1.08999 * 113.66088 * 106.19390 * 11 10 9 33 33 H 1.08996 * 113.74866 * 335.14772 * 11 10 9 34 34 H 1.08998 * 113.65927 * 89.56995 * 13 12 11 35 35 H 1.09000 * 113.66474 * 220.62583 * 13 12 11 36 36 H 1.09001 * 113.65910 * 346.35336 * 14 12 11 37 37 H 1.08999 * 113.75190 * 215.30193 * 14 12 11 38 38 H 1.09003 * 113.58261 * 270.05410 * 15 14 12 39 39 H 0.97001 * 119.99644 * 335.00424 * 16 15 14 40 40 H 1.09004 * 109.46442 * 59.99902 * 19 17 16 41 41 H 1.08999 * 109.46928 * 300.00462 * 19 17 16 42 42 H 1.09001 * 109.46727 * 60.00002 * 20 19 17 43 43 H 1.08998 * 109.47439 * 300.00642 * 20 19 17 44 44 H 1.08002 * 119.59335 * 0.02562 * 22 21 20 45 45 H 1.08002 * 119.63579 * 180.02562 * 24 23 22 46 46 H 1.08007 * 120.79853 * 0.03408 * 27 21 20 47 47 H 1.08999 * 113.66551 * 144.70737 * 28 12 11 48 48 H 1.08998 * 113.66416 * 13.64598 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0022 11 6 5.5273 -2.3644 0.5989 12 6 5.9800 -3.2900 -0.5309 13 6 4.7835 -2.7956 -1.3446 14 6 7.4011 -3.2178 -1.0908 15 6 7.7110 -4.4542 -0.2275 16 7 8.5541 -5.4440 -0.9025 17 6 9.3117 -6.2906 -0.1775 18 8 9.2951 -6.2334 1.0338 19 6 10.1794 -7.3084 -0.8720 20 6 10.9303 -8.1363 0.1728 21 6 11.7975 -9.1545 -0.5216 22 6 13.0989 -8.8441 -0.8696 23 7 13.8667 -9.7304 -1.4725 24 6 13.4294 -10.9380 -1.7715 25 6 12.1358 -11.3192 -1.4596 26 9 11.6939 -12.5581 -1.7681 27 6 11.2987 -10.4117 -0.8237 28 6 6.2080 -4.7822 -0.2872 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5285 -3.2968 0.4087 32 1 5.6183 -2.8076 1.5906 33 1 5.9537 -1.3630 0.5415 34 1 4.9996 -1.9148 -1.9492 35 1 4.2805 -3.5832 -1.9057 36 1 7.9461 -2.3242 -0.7867 37 1 7.4607 -3.4066 -2.1626 38 1 8.0656 -4.2092 0.7737 39 1 8.5672 -5.4899 -1.8713 40 1 10.8968 -6.7968 -1.5137 41 1 9.5551 -7.9659 -1.4770 42 1 10.2132 -8.6478 0.8148 43 1 11.5546 -7.4785 0.7774 44 1 13.4933 -7.8651 -0.6404 45 1 14.0878 -11.6374 -2.2653 46 1 10.2844 -10.6804 -0.5677 47 1 5.9308 -5.4111 -1.1332 48 1 5.8000 -5.1383 0.6587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122309865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:47 Heat of formation + Delta-G solvation = -21.383507 kcal Electronic energy + Delta-G solvation = -28361.862959 eV Core-core repulsion = 24138.628616 eV Total energy + Delta-G solvation = -4223.234343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.01927 -41.69299 -41.20394 -40.23061 -37.36144 -35.63895 -35.24873 -33.70048 -32.68888 -32.03069 -30.87028 -26.80745 -26.72828 -26.53300 -25.72939 -24.75723 -23.68568 -22.58399 -21.53569 -21.30157 -19.80046 -18.73340 -18.47027 -18.37479 -17.95156 -17.64282 -17.23190 -16.95096 -16.82417 -16.42885 -16.14649 -15.81527 -15.36597 -15.11134 -14.96995 -14.68053 -14.55871 -14.29685 -14.19955 -13.98804 -13.72079 -13.60890 -13.54008 -13.33034 -13.14358 -13.00924 -12.96216 -12.88242 -12.37129 -12.19815 -12.01852 -11.99904 -11.86054 -11.45816 -11.05266 -10.97782 -10.84332 -10.81132 -10.67977 -10.57424 -9.93601 -9.89859 -9.26024 -8.02441 -5.35183 -0.13918 0.03054 1.37765 1.41469 1.48927 1.69745 2.25904 2.48719 2.58952 2.96998 3.27706 3.42106 3.46990 3.51724 3.58524 3.69987 3.73876 3.80362 3.85438 3.90722 3.92526 4.08443 4.09521 4.19221 4.30442 4.38870 4.53837 4.59494 4.66135 4.72445 4.81565 4.81723 4.84052 4.89333 4.95239 4.97639 5.07127 5.10248 5.15514 5.18488 5.21124 5.30640 5.48963 5.59980 5.63662 5.67689 5.78649 6.23120 6.65504 6.77901 7.08341 7.34809 7.86081 8.05416 9.19263 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.001403 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.743814 B =19949.950338 C =20333.166515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.235 4.235 8 H 0.054 0.946 9 N -0.743 5.743 10 C 0.147 3.853 11 C -0.123 4.123 12 C -0.092 4.092 13 C -0.139 4.139 14 C -0.115 4.115 15 C 0.130 3.870 16 N -0.708 5.708 17 C 0.510 3.490 18 O -0.587 6.587 19 C -0.128 4.128 20 C -0.058 4.058 21 C -0.095 4.095 22 C 0.090 3.910 23 N -0.478 5.478 24 C 0.063 3.937 25 C 0.039 3.961 26 F -0.137 7.137 27 C -0.108 4.108 28 C -0.123 4.123 29 H 0.257 0.743 30 H 0.366 0.634 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.417 0.583 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.183 0.817 45 H 0.181 0.819 46 H 0.161 0.839 47 H 0.098 0.902 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.595 -20.539 -6.308 38.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.366 4.366 8 H 0.072 0.928 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.162 4.162 12 C -0.093 4.093 13 C -0.179 4.179 14 C -0.153 4.153 15 C 0.024 3.976 16 N -0.359 5.359 17 C 0.298 3.702 18 O -0.467 6.467 19 C -0.167 4.167 20 C -0.097 4.097 21 C -0.098 4.098 22 C -0.067 4.067 23 N -0.186 5.186 24 C -0.095 4.095 25 C 0.017 3.983 26 F -0.116 7.116 27 C -0.134 4.134 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.254 0.746 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.200 0.800 45 H 0.198 0.802 46 H 0.179 0.821 47 H 0.117 0.883 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 32.217 -20.405 -5.674 38.555 hybrid contribution -1.445 0.515 -0.049 1.535 sum 30.772 -19.890 -5.723 37.085 Atomic orbital electron populations 1.69897 1.07211 1.26658 1.59825 1.25539 0.96137 1.01355 1.02693 0.85370 0.78598 0.79432 0.78137 1.20281 1.22383 1.17611 1.19118 0.82944 0.93392 1.41131 0.92768 1.42757 1.02346 1.03975 1.89370 1.21913 0.90664 0.87591 0.96025 1.23115 0.95808 0.99545 0.97689 1.21904 0.94639 0.95616 0.97153 1.23410 0.96254 1.00431 0.97813 1.23130 0.94073 0.97433 1.00641 1.22313 0.88951 0.88803 0.97495 1.45960 1.44256 1.34779 1.10955 1.21243 0.79722 0.81833 0.87410 1.90721 1.67603 1.72191 1.16231 1.21678 0.99294 0.96689 0.99082 1.20234 0.97677 0.95263 0.96481 1.20804 0.95858 0.94652 0.98440 1.23217 0.90123 0.99632 0.93712 1.67814 1.37195 1.02086 1.11470 1.23200 0.92845 0.94604 0.98852 1.18949 0.95343 0.81619 1.02359 1.91524 1.89743 1.39206 1.91090 1.21853 1.01520 0.92875 0.97156 1.23186 0.95975 0.94623 1.02410 0.93400 0.80000 0.91721 0.91432 0.89695 0.90543 0.92191 0.90331 0.87450 0.88695 0.74557 0.86051 0.86713 0.90367 0.89438 0.79967 0.80178 0.82108 0.88349 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.57 13.97 21.65 0.30 -63.27 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.96 45.39 27.74 68.60 1.90 47.30 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 7 C -0.23 -13.48 10.45 84.03 0.88 -12.60 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.74 -34.50 5.20 -319.93 -1.67 -36.16 16 10 C 0.15 5.43 4.48 45.63 0.20 5.63 16 11 C -0.12 -3.50 7.59 30.88 0.23 -3.26 16 12 C -0.09 -2.09 1.11 -52.31 -0.06 -2.15 16 13 C -0.14 -4.10 7.64 30.89 0.24 -3.86 16 14 C -0.11 -1.85 7.59 30.88 0.23 -1.62 16 15 C 0.13 2.24 4.24 45.63 0.19 2.44 16 16 N -0.71 -8.46 5.35 -439.51 -2.35 -10.81 16 17 C 0.51 7.39 7.83 87.66 0.69 8.08 16 18 O -0.59 -14.28 15.58 -3.03 -0.05 -14.33 16 19 C -0.13 -0.78 5.68 29.85 0.17 -0.62 16 20 C -0.06 -0.48 4.66 29.85 0.14 -0.35 16 21 C -0.10 -0.80 5.15 -19.78 -0.10 -0.90 16 22 C 0.09 0.85 10.86 84.69 0.92 1.77 16 23 N -0.48 -6.28 10.36 -195.66 -2.03 -8.31 16 24 C 0.06 0.72 11.17 84.73 0.95 1.66 16 25 C 0.04 0.45 7.34 22.47 0.17 0.62 16 26 F -0.14 -1.86 17.28 44.97 0.78 -1.08 16 27 C -0.11 -1.01 9.85 22.51 0.22 -0.79 16 28 C -0.12 -2.47 7.64 30.89 0.24 -2.24 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.37 16.19 5.78 -92.71 -0.54 15.65 16 31 H 0.06 2.58 8.10 -2.39 -0.02 2.56 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.10 2.09 7.47 -2.39 -0.02 2.07 16 39 H 0.42 2.28 8.73 -92.71 -0.81 1.47 16 40 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 41 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.08 0.84 8.05 -2.39 -0.02 0.82 16 43 H 0.09 0.82 8.05 -2.39 -0.02 0.80 16 44 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 47 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.97 403.10 2.24 -74.73 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.42 Total: 23.55 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.77 Total: -11.62 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -5.74 Total: -118.55 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.05 Total: -14.33 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.30 kcal Total: -76.97 2.24 -74.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122309865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.345 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds