Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99610 * 2 1 4 4 H 1.48506 * 109.47051 * 269.99937 * 3 2 1 5 5 H 1.48494 * 109.47390 * 29.99826 * 3 2 1 6 6 H 1.48498 * 109.46907 * 150.00447 * 3 2 1 7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00044 * 164.55449 * 7 2 1 9 9 N 1.36939 * 120.00116 * 344.55074 * 7 2 1 10 10 C 1.47080 * 121.01197 * 155.92887 * 9 7 2 11 11 C 1.53257 * 109.22823 * 116.17196 * 10 9 7 12 12 N 1.46545 * 109.24835 * 45.95995 * 11 10 9 13 13 N 1.39743 * 127.32643 * 161.41509 * 12 11 10 14 14 C 1.31012 * 108.18230 * 179.52801 * 13 12 11 15 15 C 1.40068 * 108.25466 * 0.14839 * 14 13 12 16 16 C 1.50700 * 126.12901 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.47245 * 260.00414 * 16 15 14 18 18 C 1.34766 * 120.00242 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00299 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47361 * 179.97438 * 20 18 17 22 22 H 1.08994 * 110.43427 * 305.69487 * 21 20 18 23 23 C 1.54630 * 110.48557 * 183.15461 * 21 20 18 24 24 C 1.54827 * 101.60793 * 266.08140 * 23 21 20 25 25 N 1.46765 * 105.49221 * 334.57079 * 24 23 21 26 26 C 1.34420 * 111.30414 * 17.03279 * 25 24 23 27 27 O 1.21278 * 124.94505 * 179.55495 * 26 25 24 28 28 C 1.34644 * 107.74980 * 0.06859 * 15 14 13 29 29 C 1.47505 * 121.01145 * 335.65027 * 9 7 2 30 30 H 0.96999 * 119.99662 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.51054 * 236.09295 * 10 9 7 32 32 H 1.08999 * 109.51440 * 356.19336 * 10 9 7 33 33 H 1.08994 * 109.50768 * 165.89803 * 11 10 9 34 34 H 1.09000 * 109.50110 * 286.03258 * 11 10 9 35 35 H 1.08002 * 125.87731 * 180.13944 * 14 13 12 36 36 H 1.09001 * 109.47012 * 19.99913 * 16 15 14 37 37 H 1.09001 * 109.47651 * 140.00306 * 16 15 14 38 38 H 0.97005 * 119.99167 * 359.97438 * 17 16 15 39 39 H 1.09001 * 109.46620 * 299.99570 * 20 18 17 40 40 H 1.08998 * 109.47382 * 59.99091 * 20 18 17 41 41 H 1.09000 * 110.96960 * 24.24027 * 23 21 20 42 42 H 1.09006 * 110.96515 * 147.99780 * 23 21 20 43 43 H 1.09001 * 110.21984 * 215.57327 * 24 23 21 44 44 H 1.08997 * 110.25555 * 93.58547 * 24 23 21 45 45 H 0.97002 * 124.34670 * 197.06186 * 25 24 23 46 46 H 1.09004 * 109.94466 * 342.61449 * 29 9 7 47 47 H 1.08998 * 109.94945 * 103.86077 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0611 -1.2189 -0.2496 9 7 1.3629 -2.3668 0.3148 10 6 1.8647 -3.6653 -0.1598 11 6 2.2778 -4.5177 1.0450 12 7 1.2309 -4.4478 2.0680 13 7 1.0293 -5.3267 3.1356 14 6 -0.0049 -4.9066 3.8214 15 6 -0.4962 -3.7471 3.2082 16 6 -1.6785 -2.9325 3.6662 17 7 -2.8507 -3.2754 2.8571 18 6 -4.0307 -2.6671 3.0887 19 8 -4.1225 -1.8361 3.9673 20 6 -5.2367 -3.0202 2.2568 21 6 -6.4370 -2.1931 2.7217 22 1 -6.5949 -2.3203 3.7926 23 6 -7.7071 -2.5937 1.9360 24 6 -7.7015 -1.5575 0.7855 25 7 -6.9582 -0.4022 1.3021 26 6 -6.2349 -0.7319 2.3861 27 8 -5.5234 0.0309 3.0047 28 6 0.2764 -3.4910 2.1356 29 6 0.1443 -2.3577 1.1460 30 1 -0.4849 0.8401 -0.0004 31 1 1.0797 -4.1777 -0.7162 32 1 2.7267 -3.5077 -0.8079 33 1 2.4107 -5.5527 0.7302 34 1 3.2136 -4.1383 1.4554 35 1 -0.4092 -5.3739 4.7071 36 1 -1.8847 -3.1490 4.7144 37 1 -1.4554 -1.8718 3.5513 38 1 -2.7772 -3.9398 2.1541 39 1 -5.0305 -2.8045 1.2084 40 1 -5.4599 -4.0808 2.3723 41 1 -7.6225 -3.6092 1.5492 42 1 -8.5983 -2.4863 2.5544 43 1 -8.7219 -1.2679 0.5344 44 1 -7.1989 -1.9685 -0.0900 45 1 -6.9856 0.4853 0.9116 46 1 0.0627 -1.4087 1.6760 47 1 -0.7343 -2.5115 0.5195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128376519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = 34.638215 kcal Electronic energy + Delta-G solvation = -31071.004419 eV Core-core repulsion = 26870.119322 eV Total energy + Delta-G solvation = -4200.885098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97387 -40.56874 -38.80156 -36.29760 -36.27063 -34.66114 -32.97424 -32.83110 -31.24930 -30.20274 -29.41947 -28.49656 -26.43442 -25.72476 -24.41158 -23.42726 -21.95074 -21.74294 -20.53801 -20.12360 -19.65902 -18.39653 -17.45661 -16.91550 -16.70103 -16.06478 -15.96202 -15.68990 -15.34860 -14.99384 -14.70199 -14.44324 -13.89052 -13.81634 -13.72521 -13.58373 -13.44465 -13.25277 -13.14629 -12.83919 -12.64371 -12.61607 -12.39706 -11.99060 -11.67657 -11.55291 -11.44355 -11.27167 -11.08283 -10.95422 -10.85696 -10.70838 -10.18670 -10.15294 -10.06394 -9.67035 -9.40842 -9.09318 -8.88583 -8.60022 -8.52541 -7.88984 -7.06388 -5.99262 -3.42324 2.44346 2.75938 2.97294 3.03085 3.06111 3.30614 3.36525 3.39521 3.41005 3.76999 4.24484 4.33137 4.33999 4.52508 4.84254 4.94651 4.97993 5.08135 5.20287 5.23243 5.25481 5.30416 5.40236 5.42243 5.56604 5.57252 5.59435 5.62669 5.66206 5.75028 5.87523 5.90397 6.22321 6.23989 6.41380 6.42058 6.59125 6.83474 6.86742 6.93655 7.05238 7.11537 7.17628 7.59450 7.62570 7.91001 8.11418 8.25631 8.42054 8.64211 8.93819 9.56583 10.08828 11.11564 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.003541 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.098047 B = 7906.336081 C = 9921.643290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.010 3.990 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.130 3.870 11 C 0.114 3.886 12 N -0.358 5.358 13 N -0.319 5.319 14 C 0.056 3.944 15 C -0.286 4.286 16 C 0.211 3.789 17 N -0.722 5.722 18 C 0.499 3.501 19 O -0.515 6.515 20 C -0.125 4.125 21 C -0.108 4.108 22 H 0.111 0.889 23 C -0.131 4.131 24 C 0.101 3.899 25 N -0.743 5.743 26 C 0.516 3.484 27 O -0.492 6.492 28 C 0.119 3.881 29 C 0.231 3.769 30 H 0.260 0.740 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.408 0.592 46 H 0.109 0.891 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -10.356 0.268 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.010 4.010 12 N -0.140 5.140 13 N -0.139 5.139 14 C -0.131 4.131 15 C -0.299 4.299 16 C 0.088 3.912 17 N -0.374 5.374 18 C 0.284 3.716 19 O -0.390 6.390 20 C -0.166 4.166 21 C -0.130 4.130 22 H 0.129 0.871 23 C -0.169 4.169 24 C -0.024 4.024 25 N -0.401 5.401 26 C 0.300 3.700 27 O -0.363 6.363 28 C -0.013 4.013 29 C 0.105 3.895 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.247 0.753 46 H 0.127 0.873 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.027 -10.183 1.107 16.572 hybrid contribution -0.106 1.348 -0.581 1.471 sum -13.133 -8.836 0.526 15.837 Atomic orbital electron populations 1.69932 1.05233 1.26347 1.52947 1.25035 0.95437 0.98573 0.99936 0.86229 0.79152 0.83186 0.77805 1.21159 1.21212 1.20342 1.19132 0.92416 0.83930 1.44032 0.90930 1.44191 1.29364 1.01357 1.56974 1.21263 0.99197 0.87403 0.92023 1.22542 0.88841 1.01462 0.88170 1.48488 1.24107 1.19564 1.21801 1.77157 1.20031 1.16593 1.00113 1.23668 0.94499 0.95338 0.99589 1.19463 1.05188 1.03191 1.02016 1.19266 0.80557 0.97890 0.93524 1.46157 1.09512 1.43534 1.38230 1.20452 0.84356 0.81745 0.85066 1.90820 1.84610 1.31191 1.32406 1.21539 0.92640 1.01292 1.01125 1.21700 0.94737 0.93513 1.03032 0.87065 1.22766 0.97592 0.99703 0.96831 1.22070 0.96750 0.86664 0.96883 1.46272 1.49339 1.12880 1.31587 1.20711 0.79015 0.90167 0.80068 1.90853 1.36564 1.56035 1.52878 1.22580 0.88541 0.92833 0.97339 1.19905 0.89219 0.92351 0.88045 0.93004 0.94672 0.89752 0.90230 0.90638 0.80781 0.91500 0.91005 0.77002 0.88702 0.87965 0.88967 0.89769 0.90557 0.91146 0.75340 0.87328 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.08 55.49 0.61 -24.50 16 2 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 3 Si 0.91 21.28 29.58 -169.99 -5.03 16.25 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.27 -6.91 9.66 -15.06 -0.15 -7.06 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -14.05 3.01 -172.97 -0.52 -14.57 16 10 C 0.13 2.43 6.49 -3.59 -0.02 2.41 16 11 C 0.11 1.95 7.44 -3.88 -0.03 1.92 16 12 N -0.36 -6.94 4.03 -56.94 -0.23 -7.17 16 13 N -0.32 -5.93 12.61 30.70 0.39 -5.55 16 14 C 0.06 0.92 11.97 -17.22 -0.21 0.71 16 15 C -0.29 -5.07 5.46 -105.21 -0.57 -5.65 16 16 C 0.21 3.57 5.95 -5.19 -0.03 3.54 16 17 N -0.72 -10.70 5.55 -61.47 -0.34 -11.04 16 18 C 0.50 7.71 7.62 -10.99 -0.08 7.62 16 19 O -0.52 -10.27 13.83 -15.99 -0.22 -10.49 16 20 C -0.13 -1.31 5.11 -27.88 -0.14 -1.45 16 21 C -0.11 -1.14 2.54 -90.63 -0.23 -1.37 16 22 H 0.11 1.27 7.96 -51.93 -0.41 0.86 16 23 C -0.13 -0.79 6.73 -24.91 -0.17 -0.96 16 24 C 0.10 0.65 7.79 -2.94 -0.02 0.63 16 25 N -0.74 -7.76 6.24 -59.01 -0.37 -8.13 16 26 C 0.52 7.52 7.42 -10.86 -0.08 7.44 16 27 O -0.49 -10.09 16.03 -15.98 -0.26 -10.35 16 28 C 0.12 2.39 6.71 -82.16 -0.55 1.84 16 29 C 0.23 5.31 5.12 -4.48 -0.02 5.29 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.46 7.94 -51.93 -0.41 1.04 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.40 5.13 8.46 -40.82 -0.35 4.79 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.09 0.35 7.90 -51.93 -0.41 -0.06 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.41 3.92 8.96 -40.82 -0.37 3.56 16 46 H 0.11 2.85 6.46 -51.93 -0.34 2.52 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -36.10 385.78 -9.45 -45.55 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.90 Total: 9.09 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: -2.40 Total: 15.10 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.46 Total: -70.96 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.48 Total: -20.84 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.10 -9.45 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128376519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.186 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds