Wall clock time and date at job start Wed Apr 1 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99610 * 2 1 4 4 H 1.48506 * 109.47051 * 269.99937 * 3 2 1 5 5 H 1.48494 * 109.47390 * 29.99826 * 3 2 1 6 6 H 1.48498 * 109.46907 * 150.00447 * 3 2 1 7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00044 * 164.55449 * 7 2 1 9 9 N 1.36939 * 120.00116 * 344.55074 * 7 2 1 10 10 C 1.47080 * 121.01197 * 155.92887 * 9 7 2 11 11 C 1.53257 * 109.22823 * 116.17196 * 10 9 7 12 12 N 1.46545 * 109.24835 * 45.95995 * 11 10 9 13 13 N 1.39743 * 127.32643 * 161.41509 * 12 11 10 14 14 C 1.31012 * 108.18230 * 179.52801 * 13 12 11 15 15 C 1.40068 * 108.25466 * 0.14839 * 14 13 12 16 16 C 1.50700 * 126.12901 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.47245 * 260.00414 * 16 15 14 18 18 C 1.34766 * 120.00242 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00299 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47361 * 179.97438 * 20 18 17 22 22 H 1.08994 * 110.43427 * 305.69487 * 21 20 18 23 23 C 1.54630 * 110.48557 * 183.15461 * 21 20 18 24 24 C 1.54827 * 101.60793 * 266.08140 * 23 21 20 25 25 N 1.46765 * 105.49221 * 334.57079 * 24 23 21 26 26 C 1.34420 * 111.30414 * 17.03279 * 25 24 23 27 27 O 1.21278 * 124.94505 * 179.55495 * 26 25 24 28 28 C 1.34644 * 107.74980 * 0.06859 * 15 14 13 29 29 C 1.47505 * 121.01145 * 335.65027 * 9 7 2 30 30 H 0.96999 * 119.99662 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.51054 * 236.09295 * 10 9 7 32 32 H 1.08999 * 109.51440 * 356.19336 * 10 9 7 33 33 H 1.08994 * 109.50768 * 165.89803 * 11 10 9 34 34 H 1.09000 * 109.50110 * 286.03258 * 11 10 9 35 35 H 1.08002 * 125.87731 * 180.13944 * 14 13 12 36 36 H 1.09001 * 109.47012 * 19.99913 * 16 15 14 37 37 H 1.09001 * 109.47651 * 140.00306 * 16 15 14 38 38 H 0.97005 * 119.99167 * 359.97438 * 17 16 15 39 39 H 1.09001 * 109.46620 * 299.99570 * 20 18 17 40 40 H 1.08998 * 109.47382 * 59.99091 * 20 18 17 41 41 H 1.09000 * 110.96960 * 24.24027 * 23 21 20 42 42 H 1.09006 * 110.96515 * 147.99780 * 23 21 20 43 43 H 1.09001 * 110.21984 * 215.57327 * 24 23 21 44 44 H 1.08997 * 110.25555 * 93.58547 * 24 23 21 45 45 H 0.97002 * 124.34670 * 197.06186 * 25 24 23 46 46 H 1.09004 * 109.94466 * 342.61449 * 29 9 7 47 47 H 1.08998 * 109.94945 * 103.86077 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0611 -1.2189 -0.2496 9 7 1.3629 -2.3668 0.3148 10 6 1.8647 -3.6653 -0.1598 11 6 2.2778 -4.5177 1.0450 12 7 1.2309 -4.4478 2.0680 13 7 1.0293 -5.3267 3.1356 14 6 -0.0049 -4.9066 3.8214 15 6 -0.4962 -3.7471 3.2082 16 6 -1.6785 -2.9325 3.6662 17 7 -2.8507 -3.2754 2.8571 18 6 -4.0307 -2.6671 3.0887 19 8 -4.1225 -1.8361 3.9673 20 6 -5.2367 -3.0202 2.2568 21 6 -6.4370 -2.1931 2.7217 22 1 -6.5949 -2.3203 3.7926 23 6 -7.7071 -2.5937 1.9360 24 6 -7.7015 -1.5575 0.7855 25 7 -6.9582 -0.4022 1.3021 26 6 -6.2349 -0.7319 2.3861 27 8 -5.5234 0.0309 3.0047 28 6 0.2764 -3.4910 2.1356 29 6 0.1443 -2.3577 1.1460 30 1 -0.4849 0.8401 -0.0004 31 1 1.0797 -4.1777 -0.7162 32 1 2.7267 -3.5077 -0.8079 33 1 2.4107 -5.5527 0.7302 34 1 3.2136 -4.1383 1.4554 35 1 -0.4092 -5.3739 4.7071 36 1 -1.8847 -3.1490 4.7144 37 1 -1.4554 -1.8718 3.5513 38 1 -2.7772 -3.9398 2.1541 39 1 -5.0305 -2.8045 1.2084 40 1 -5.4599 -4.0808 2.3723 41 1 -7.6225 -3.6092 1.5492 42 1 -8.5983 -2.4863 2.5544 43 1 -8.7219 -1.2679 0.5344 44 1 -7.1989 -1.9685 -0.0900 45 1 -6.9856 0.4853 0.9116 46 1 0.0627 -1.4087 1.6760 47 1 -0.7343 -2.5115 0.5195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128376519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:07 Heat of formation + Delta-G solvation = 6.842402 kcal Electronic energy + Delta-G solvation = -31072.209736 eV Core-core repulsion = 26870.119322 eV Total energy + Delta-G solvation = -4202.090415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43755 -41.54728 -40.02443 -37.98534 -37.33827 -36.05178 -34.63201 -33.77157 -32.87714 -31.83677 -30.59574 -29.56533 -27.90300 -27.09565 -25.75464 -25.06955 -23.32371 -22.59132 -21.68755 -21.58708 -20.68572 -19.96865 -18.56221 -18.50375 -18.04378 -17.40708 -17.17380 -16.81621 -16.70992 -16.44664 -16.08263 -15.69954 -15.49276 -15.27831 -15.02147 -14.81243 -14.74608 -14.63941 -14.35583 -14.02520 -13.92924 -13.54188 -13.39571 -13.30423 -13.12983 -13.00087 -12.83240 -12.73135 -12.63916 -12.37007 -12.10270 -12.05555 -11.94794 -11.82004 -11.62237 -10.90276 -10.79565 -10.58262 -10.07167 -9.96621 -9.91616 -9.38434 -8.97622 -8.02217 -5.45625 0.91985 1.40971 1.45594 1.52575 1.58826 1.65112 1.70931 1.85333 2.41692 2.55908 2.60102 3.17841 3.41239 3.49235 3.60393 3.61673 3.81846 3.83452 4.05106 4.16728 4.20080 4.23742 4.26305 4.36884 4.43353 4.52492 4.56528 4.69592 4.76763 4.79953 4.82878 4.85836 4.93797 4.98307 5.01228 5.16299 5.23325 5.27576 5.35150 5.54858 5.57831 5.75428 6.05076 6.08222 6.12124 6.16761 6.72507 6.79499 6.95682 7.40022 7.47011 7.63136 8.13707 9.06498 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.003541 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.098047 B = 7906.336081 C = 9921.643290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.081 0.919 9 N -0.616 5.616 10 C 0.129 3.871 11 C 0.117 3.883 12 N -0.366 5.366 13 N -0.324 5.324 14 C 0.068 3.932 15 C -0.273 4.273 16 C 0.219 3.781 17 N -0.715 5.715 18 C 0.488 3.512 19 O -0.566 6.566 20 C -0.116 4.116 21 C -0.107 4.107 22 H 0.098 0.902 23 C -0.114 4.114 24 C 0.093 3.907 25 N -0.736 5.736 26 C 0.496 3.504 27 O -0.571 6.571 28 C 0.094 3.906 29 C 0.251 3.749 30 H 0.250 0.750 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.216 0.784 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.408 0.592 39 H 0.104 0.896 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.408 0.592 46 H 0.065 0.935 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.168 -13.777 -0.534 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.099 0.901 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.006 4.006 12 N -0.148 5.148 13 N -0.144 5.144 14 C -0.118 4.118 15 C -0.285 4.285 16 C 0.094 3.906 17 N -0.367 5.367 18 C 0.276 3.724 19 O -0.444 6.444 20 C -0.156 4.156 21 C -0.129 4.129 22 H 0.116 0.884 23 C -0.151 4.151 24 C -0.030 4.030 25 N -0.392 5.392 26 C 0.283 3.717 27 O -0.449 6.449 28 C -0.037 4.037 29 C 0.124 3.876 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.244 0.756 39 H 0.122 0.878 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.246 0.754 46 H 0.083 0.917 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.873 -13.687 0.222 19.489 hybrid contribution 0.138 2.366 -0.343 2.395 sum -13.735 -11.320 -0.121 17.799 Atomic orbital electron populations 1.70095 1.06515 1.26013 1.54967 1.25724 0.96037 1.01378 1.00770 0.85336 0.78026 0.79634 0.77861 1.20325 1.22760 1.19440 1.19495 0.92907 0.84979 1.42271 0.90124 1.44428 1.29345 1.02571 1.57606 1.21447 0.99802 0.85394 0.93158 1.22545 0.88093 1.02979 0.86972 1.48677 1.24192 1.19402 1.22514 1.77154 1.20689 1.16531 1.00064 1.24234 0.93275 0.94261 1.00022 1.19537 1.04597 1.03315 1.01060 1.19033 0.81469 0.95402 0.94694 1.46062 1.08875 1.43627 1.38163 1.21471 0.85570 0.80580 0.84825 1.90810 1.85467 1.33265 1.34906 1.21641 0.89835 1.03981 1.00103 1.21736 0.97177 0.90802 1.03210 0.88364 1.22848 0.95242 1.01251 0.95805 1.22472 0.97884 0.85276 0.97396 1.46453 1.48211 1.14256 1.30248 1.21599 0.78209 0.91647 0.80274 1.90802 1.40096 1.58353 1.55651 1.22160 0.90498 0.92990 0.98075 1.19284 0.88680 0.91609 0.87985 0.94133 0.93946 0.88167 0.86749 0.90649 0.76754 0.90162 0.95281 0.75650 0.87788 0.83052 0.85361 0.88325 0.87668 0.89655 0.75367 0.91687 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 11.08 21.65 0.24 -54.29 16 2 C -0.04 -2.36 5.00 84.86 0.42 -1.94 16 3 Si 0.96 44.95 29.58 68.60 2.03 46.98 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.27 -14.04 9.66 84.03 0.81 -13.23 16 8 H 0.08 4.02 7.88 -2.91 -0.02 4.00 16 9 N -0.62 -29.41 3.01 -701.15 -2.11 -31.52 16 10 C 0.13 4.68 6.49 86.35 0.56 5.24 16 11 C 0.12 3.75 7.44 86.46 0.64 4.40 16 12 N -0.37 -13.61 4.03 -334.06 -1.35 -14.96 16 13 N -0.32 -11.21 12.61 -56.80 -0.72 -11.92 16 14 C 0.07 2.08 11.97 85.26 1.02 3.10 16 15 C -0.27 -9.54 5.46 -20.24 -0.11 -9.65 16 16 C 0.22 7.63 5.95 85.63 0.51 8.14 16 17 N -0.71 -21.35 5.55 -466.79 -2.59 -23.94 16 18 C 0.49 15.36 7.62 87.66 0.67 16.03 16 19 O -0.57 -23.98 13.83 17.56 0.24 -23.74 16 20 C -0.12 -2.20 5.11 29.85 0.15 -2.05 16 21 C -0.11 -2.15 2.54 -10.80 -0.03 -2.18 16 22 H 0.10 2.24 7.96 -2.39 -0.02 2.22 16 23 C -0.11 -0.93 6.73 31.77 0.21 -0.71 16 24 C 0.09 0.90 7.79 86.95 0.68 1.58 16 25 N -0.74 -15.19 6.24 -459.21 -2.87 -18.05 16 26 C 0.50 15.07 7.42 87.90 0.65 15.72 16 27 O -0.57 -25.54 16.03 17.57 0.28 -25.26 16 28 C 0.09 3.80 6.71 41.30 0.28 4.08 16 29 C 0.25 12.05 5.12 85.55 0.44 12.49 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.10 3.28 7.94 -2.39 -0.02 3.26 16 33 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.22 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 10.20 8.46 -92.70 -0.78 9.42 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.15 1.40 8.13 -2.39 -0.02 1.38 16 41 H 0.13 0.21 7.90 -2.39 -0.02 0.19 16 42 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.41 8.07 8.96 -92.71 -0.83 7.24 16 46 H 0.06 3.67 6.46 -2.38 -0.02 3.66 16 47 H 0.03 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -86.62 385.78 -0.52 -87.15 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.60 Total: 28.54 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 6.91 Total: 41.02 kcal Atomic # 7 Polarization: -145.29 SS G_CDS: -9.39 Total: -154.68 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: 0.52 Total: -49.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -86.62 -0.52 -87.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128376519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.988 kcal (2) G-P(sol) polarization free energy of solvation -86.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds