Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00422 * 2 1 4 4 H 1.48497 * 109.47405 * 269.99984 * 3 2 1 5 5 H 1.48508 * 109.46906 * 29.99517 * 3 2 1 6 6 H 1.48500 * 109.47347 * 149.99686 * 3 2 1 7 7 C 1.38812 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00610 * 169.40377 * 7 2 1 9 9 N 1.36943 * 119.99792 * 349.40876 * 7 2 1 10 10 C 1.47156 * 120.98070 * 328.52287 * 9 7 2 11 11 C 1.53290 * 108.38504 * 230.51567 * 10 9 7 12 12 O 1.42959 * 109.22776 * 307.70112 * 11 10 9 13 13 C 1.42981 * 114.19871 * 62.56131 * 12 11 10 14 14 C 1.47155 * 120.98245 * 148.50900 * 9 7 2 15 15 H 1.08994 * 109.67800 * 249.24510 * 14 9 7 16 16 C 1.50702 * 109.68035 * 9.75991 * 14 9 7 17 17 N 1.30706 * 125.52944 * 44.44358 * 16 14 9 18 18 N 1.40443 * 106.79162 * 179.78417 * 17 16 14 19 19 H 0.97000 * 126.81963 * 180.25637 * 18 17 16 20 20 C 1.34423 * 106.35311 * 0.40413 * 18 17 16 21 21 C 1.50700 * 125.96143 * 179.86227 * 20 18 17 22 22 N 1.46503 * 109.47401 * 94.68505 * 21 20 18 23 23 C 1.34774 * 119.99712 * 180.02562 * 22 21 20 24 24 O 1.21617 * 120.00575 * 0.02562 * 23 22 21 25 25 C 1.47103 * 119.99904 * 180.02562 * 23 22 21 26 26 C 1.32994 * 120.00561 * 179.97438 * 25 23 22 27 27 C 1.50693 * 120.00232 * 179.97438 * 26 25 23 28 28 C 1.53000 * 117.49815 * 188.74907 * 27 26 25 29 29 C 1.53005 * 117.49669 * 120.09314 * 27 26 25 30 30 N 1.30829 * 108.08012 * 359.58971 * 20 18 17 31 31 H 0.96996 * 119.99933 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.67960 * 350.24431 * 10 9 7 33 33 H 1.09006 * 109.67498 * 110.79387 * 10 9 7 34 34 H 1.09000 * 109.51085 * 67.62493 * 11 10 9 35 35 H 1.09000 * 109.51333 * 187.77534 * 11 10 9 36 36 H 1.09003 * 109.54164 * 177.53975 * 13 12 11 37 37 H 1.08997 * 109.48141 * 57.38453 * 13 12 11 38 38 H 1.09009 * 109.46631 * 334.68600 * 21 20 18 39 39 H 1.09002 * 109.47248 * 214.69148 * 21 20 18 40 40 H 0.96992 * 120.00079 * 0.27882 * 22 21 20 41 41 H 1.08001 * 119.99887 * 359.97438 * 25 23 22 42 42 H 1.07999 * 119.99517 * 0.02562 * 26 25 23 43 43 H 1.08994 * 115.55670 * 334.42610 * 27 26 25 44 44 H 1.08996 * 117.49965 * 0.02562 * 28 27 26 45 45 H 1.08998 * 117.49995 * 145.02759 * 28 27 26 46 46 H 1.08995 * 117.49974 * 214.98123 * 29 27 26 47 47 H 1.09004 * 117.49489 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0764 -1.2103 -0.1714 9 7 1.3430 -2.3779 0.2190 10 6 0.1549 -2.4247 1.0861 11 6 0.3430 -3.5560 2.1033 12 8 0.6712 -4.7625 1.4103 13 6 1.9008 -4.7047 0.6829 14 6 1.7927 -3.6317 -0.4065 15 1 1.0707 -3.9453 -1.1604 16 6 3.1397 -3.4235 -1.0493 17 7 4.1489 -2.7913 -0.5105 18 7 5.1993 -2.8355 -1.4417 19 1 6.0862 -2.4571 -1.3361 20 6 4.7303 -3.5036 -2.5098 21 6 5.4962 -3.8030 -3.7726 22 7 6.0940 -5.1371 -3.6765 23 6 6.8302 -5.6206 -4.6967 24 8 6.9987 -4.9494 -5.6967 25 6 7.4299 -6.9604 -4.6005 26 6 8.1560 -7.4379 -5.6073 27 6 8.7708 -8.8101 -5.5084 28 6 9.7586 -9.2221 -6.6018 29 6 8.3611 -9.8451 -6.5582 30 7 3.4948 -3.8535 -2.2594 31 1 -0.4850 0.8400 -0.0004 32 1 0.0446 -1.4750 1.6093 33 1 -0.7324 -2.6172 0.4828 34 1 1.1505 -3.2987 2.7887 35 1 -0.5805 -3.6982 2.6645 36 1 2.0977 -5.6727 0.2222 37 1 2.7141 -4.4522 1.3633 38 1 6.2836 -3.0607 -3.9046 39 1 4.8183 -3.7691 -4.6255 40 1 5.9569 -5.6738 -2.8804 41 1 7.2807 -7.5564 -3.7122 42 1 8.3056 -6.8418 -6.4953 43 1 8.9619 -9.1680 -4.4968 44 1 9.9640 -8.5004 -7.3924 45 1 10.5993 -9.8513 -6.3096 46 1 8.2829 -10.8838 -6.2372 47 1 7.6464 -9.5334 -7.3200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130842348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = 63.331986 kcal Electronic energy + Delta-G solvation = -29675.541540 eV Core-core repulsion = 25475.900698 eV Total energy + Delta-G solvation = -4199.640842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31062 -40.77005 -39.98317 -38.43772 -36.62555 -36.09188 -34.40729 -33.54250 -33.11359 -32.51085 -31.39344 -28.82909 -28.42375 -25.47350 -25.26079 -25.02936 -23.22326 -22.87233 -21.84254 -21.78555 -21.06677 -20.57755 -19.35355 -18.56419 -18.23941 -17.58746 -17.40382 -16.82395 -16.40740 -16.34360 -16.27530 -15.97316 -15.91125 -15.71939 -15.24577 -15.15299 -14.78968 -14.60273 -14.47154 -14.20517 -13.56289 -13.38923 -13.16593 -13.04275 -12.87030 -12.72367 -12.58470 -12.36723 -12.30851 -12.15999 -12.09326 -11.91703 -11.48773 -11.41773 -11.19756 -11.11919 -11.06306 -10.90280 -10.57874 -10.40221 -10.26145 -9.97696 -8.67002 -7.88714 -5.39769 0.31016 0.42712 1.37904 1.39316 1.48569 1.53621 1.66301 2.21601 2.28178 2.44813 2.72876 2.99490 3.04360 3.28243 3.41274 3.56097 3.62955 3.79083 3.97042 4.03666 4.09770 4.13619 4.21470 4.22825 4.36240 4.45023 4.47938 4.50491 4.60899 4.62400 4.81515 4.88473 4.96596 5.02374 5.13429 5.14253 5.18974 5.21692 5.26006 5.26431 5.35464 5.49019 5.58927 5.78687 6.13396 6.24024 6.37610 6.41681 7.03116 7.10857 7.12431 7.73128 8.29024 9.17929 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.002158 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.437557 B =12972.133213 C =14357.012428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.961 3.039 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.254 4.254 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.047 3.953 12 O -0.391 6.391 13 C 0.073 3.927 14 C 0.219 3.781 15 H 0.045 0.955 16 C 0.241 3.759 17 N -0.289 5.289 18 N -0.465 5.465 19 H 0.454 0.546 20 C 0.266 3.734 21 C 0.213 3.787 22 N -0.709 5.709 23 C 0.550 3.450 24 O -0.585 6.585 25 C -0.219 4.219 26 C -0.025 4.025 27 C -0.149 4.149 28 C -0.170 4.170 29 C -0.165 4.165 30 N -0.541 5.541 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.007 0.993 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.416 0.584 41 H 0.155 0.845 42 H 0.113 0.887 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.899 -18.513 -6.607 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.789 3.211 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.108 0.892 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.031 4.031 12 O -0.309 6.309 13 C -0.006 4.006 14 C 0.111 3.889 15 H 0.062 0.938 16 C -0.041 4.041 17 N -0.118 5.118 18 N -0.186 5.186 19 H 0.303 0.697 20 C -0.013 4.013 21 C 0.087 3.913 22 N -0.362 5.362 23 C 0.341 3.659 24 O -0.467 6.467 25 C -0.239 4.239 26 C -0.045 4.045 27 C -0.167 4.167 28 C -0.207 4.207 29 C -0.202 4.202 30 N -0.271 5.271 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.253 0.747 41 H 0.173 0.827 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.503 -17.908 -6.777 26.627 hybrid contribution 0.430 1.861 0.111 1.913 sum 18.934 -16.047 -6.666 25.699 Atomic orbital electron populations 1.70132 1.06340 1.25581 1.56148 1.25910 0.96168 1.01209 1.01405 0.85377 0.78287 0.80236 0.77169 1.21914 1.21548 1.19582 1.20003 0.92331 0.83912 1.42209 0.89170 1.44197 1.32198 1.03322 1.53038 1.21305 0.87457 0.97481 0.91172 1.23262 1.01039 0.84834 0.93926 1.87817 1.40767 1.35936 1.66405 1.22863 0.86487 0.98661 0.92628 1.19579 0.86554 0.89357 0.93458 0.93772 1.23764 0.95937 0.94584 0.89865 1.78217 0.96845 1.22075 1.14657 1.48094 1.14738 1.43724 1.12014 0.69717 1.24282 0.90824 0.93908 0.92329 1.19565 0.96114 0.86341 0.89289 1.45677 1.52162 1.17385 1.20929 1.18966 0.77646 0.87580 0.81669 1.90798 1.62410 1.61493 1.32001 1.22473 1.03734 0.94659 1.03067 1.23178 0.90231 0.94226 0.96906 1.21402 1.05010 0.92610 0.97682 1.23132 0.93664 1.03678 1.00208 1.23087 0.98439 0.98188 1.00506 1.70264 1.12320 1.28195 1.16280 0.94224 0.91255 0.97492 0.93410 0.86883 0.86780 0.93218 0.86915 0.88394 0.74738 0.82725 0.86881 0.85211 0.88535 0.86859 0.86768 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.83 11.15 21.65 0.24 -55.58 16 2 C -0.05 -2.95 5.06 84.86 0.43 -2.52 16 3 Si 0.96 46.13 29.57 68.60 2.03 48.16 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.25 -14.07 8.76 84.03 0.74 -13.34 16 8 H 0.09 4.91 4.92 -2.91 -0.01 4.90 16 9 N -0.60 -30.80 3.03 -677.86 -2.06 -32.86 16 10 C 0.15 7.38 5.37 86.35 0.46 7.84 16 11 C 0.05 1.81 6.99 72.08 0.50 2.32 16 12 O -0.39 -15.06 10.74 -148.98 -1.60 -16.66 16 13 C 0.07 2.68 6.27 72.08 0.45 3.13 16 14 C 0.22 9.67 3.62 44.22 0.16 9.83 16 15 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 16 C 0.24 9.81 6.13 138.63 0.85 10.66 16 17 N -0.29 -11.15 10.04 -51.33 -0.52 -11.67 16 18 N -0.46 -12.77 7.45 -50.71 -0.38 -13.14 16 19 H 0.45 8.64 8.96 -213.10 -1.91 6.73 16 20 C 0.27 7.27 7.60 138.23 1.05 8.32 16 21 C 0.21 4.38 6.30 85.63 0.54 4.92 16 22 N -0.71 -12.27 5.54 -470.43 -2.61 -14.88 16 23 C 0.55 11.00 7.76 86.57 0.67 11.67 16 24 O -0.59 -16.26 16.22 -4.08 -0.07 -16.33 16 25 C -0.22 -3.05 9.67 23.43 0.23 -2.82 16 26 C -0.03 -0.35 9.24 24.52 0.23 -0.12 16 27 C -0.15 -1.37 6.00 -11.54 -0.07 -1.44 16 28 C -0.17 -1.32 10.24 30.62 0.31 -1.00 16 29 C -0.17 -1.34 10.24 30.62 0.31 -1.03 16 30 N -0.54 -19.45 11.19 -179.73 -2.01 -21.46 16 31 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.07 3.72 6.35 -2.39 -0.02 3.71 16 33 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 38 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.42 5.78 8.45 -92.71 -0.78 5.00 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.11 1.89 7.49 -2.91 -0.02 1.87 16 43 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -76.43 393.88 -1.77 -78.19 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -1.67 Total: 19.82 kcal Atomic # 6 Polarization: 29.54 SS G_CDS: 6.87 Total: 36.41 kcal Atomic # 7 Polarization: -142.27 SS G_CDS: -7.33 Total: -149.59 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.67 Total: -32.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.43 -1.77 -78.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130842348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.527 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds