Wall clock time and date at job start Wed Apr 1 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47003 * 240.00402 * 3 2 1 5 5 H 1.48500 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46706 * 120.00841 * 3 2 1 7 7 C 1.38808 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 169.90728 * 7 2 1 9 9 N 1.36939 * 119.99905 * 349.90076 * 7 2 1 10 10 C 1.47149 * 120.98097 * 327.01183 * 9 7 2 11 11 C 1.53300 * 108.38501 * 230.51177 * 10 9 7 12 12 O 1.42961 * 109.22172 * 307.70202 * 11 10 9 13 13 C 1.42968 * 114.20087 * 62.56444 * 12 11 10 14 14 C 1.47147 * 120.98154 * 146.99565 * 9 7 2 15 15 H 1.09005 * 109.68045 * 249.25107 * 14 9 7 16 16 C 1.50706 * 109.68311 * 9.75906 * 14 9 7 17 17 N 1.30712 * 125.52514 * 44.44512 * 16 14 9 18 18 N 1.40437 * 106.79462 * 179.78435 * 17 16 14 19 19 H 0.97001 * 126.82730 * 180.25940 * 18 17 16 20 20 C 1.34440 * 106.35323 * 0.40332 * 18 17 16 21 21 C 1.50698 * 125.96196 * 179.85987 * 20 18 17 22 22 N 1.46490 * 109.47240 * 94.69013 * 21 20 18 23 23 C 1.34781 * 119.99958 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00142 * 0.02562 * 23 22 21 25 25 C 1.47104 * 119.99829 * 180.02562 * 23 22 21 26 26 C 1.32996 * 119.99712 * 173.59807 * 25 23 22 27 27 C 1.50695 * 120.00145 * 352.35376 * 26 25 23 28 28 C 1.53000 * 117.50033 * 181.68977 * 27 26 25 29 29 C 1.53000 * 117.49956 * 113.06455 * 27 26 25 30 30 N 1.30835 * 108.07369 * 359.59359 * 20 18 17 31 31 H 0.97006 * 119.99871 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.68353 * 350.23793 * 10 9 7 33 33 H 1.09009 * 109.67720 * 110.79234 * 10 9 7 34 34 H 1.08996 * 109.51053 * 67.62511 * 11 10 9 35 35 H 1.09005 * 109.50823 * 187.77712 * 11 10 9 36 36 H 1.09005 * 109.54918 * 177.53151 * 13 12 11 37 37 H 1.09001 * 109.48563 * 57.38039 * 13 12 11 38 38 H 1.08997 * 109.46932 * 334.68748 * 21 20 18 39 39 H 1.09003 * 109.46695 * 214.69271 * 21 20 18 40 40 H 0.97004 * 120.00020 * 0.02562 * 22 21 20 41 41 H 1.07999 * 120.00116 * 353.58893 * 25 23 22 42 42 H 1.07998 * 119.99789 * 172.62783 * 26 25 23 43 43 H 1.09008 * 115.55057 * 327.39794 * 27 26 25 44 44 H 1.09004 * 117.49877 * 0.02562 * 28 27 26 45 45 H 1.09002 * 117.49836 * 145.01720 * 28 27 26 46 46 H 1.09003 * 117.49996 * 214.97744 * 29 27 26 47 47 H 1.08999 * 117.50137 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0777 -1.2094 -0.1644 9 7 1.3414 -2.3789 0.2069 10 6 0.1665 -2.4368 1.0909 11 6 0.3652 -3.5871 2.0846 12 8 0.6777 -4.7821 1.3648 13 6 1.8962 -4.7160 0.6200 14 6 1.7762 -3.6229 -0.4479 15 1 1.0415 -3.9199 -1.1964 16 6 3.1142 -3.4085 -1.1075 17 7 4.1342 -2.7901 -0.5728 18 7 5.1701 -2.8216 -1.5205 19 1 6.0601 -2.4488 -1.4216 20 6 4.6821 -3.4684 -2.5933 21 6 5.4276 -3.7479 -3.8728 22 7 6.0209 -5.0857 -3.8101 23 6 6.7387 -5.5541 -4.8503 24 8 6.8941 -4.8658 -5.8408 25 6 7.3341 -6.8978 -4.7875 26 6 7.9329 -7.4105 -5.8586 27 6 7.8530 -6.6938 -7.1819 28 6 8.5289 -7.3544 -8.3850 29 6 9.1486 -6.1090 -7.7479 30 7 3.4490 -3.8179 -2.3304 31 1 -0.4850 0.8401 0.0004 32 1 0.0682 -1.4963 1.6330 33 1 -0.7307 -2.6148 0.4979 34 1 1.1840 -3.3455 2.7621 35 1 -0.5504 -3.7357 2.6572 36 1 2.0822 -5.6763 0.1389 37 1 2.7209 -4.4792 1.2924 38 1 6.2158 -3.0065 -4.0034 39 1 4.7368 -3.6958 -4.7145 40 1 5.8967 -5.6349 -3.0201 41 1 7.2851 -7.4678 -3.8715 42 1 8.4726 -8.3427 -5.7811 43 1 6.9305 -6.1419 -7.3627 44 1 9.0311 -8.3077 -8.2196 45 1 8.0511 -7.2374 -9.3577 46 1 9.0784 -5.1726 -8.3015 47 1 10.0588 -6.2429 -7.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130842353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:59 Heat of formation + Delta-G solvation = 94.994475 kcal Electronic energy + Delta-G solvation = -30023.461146 eV Core-core repulsion = 25825.193292 eV Total energy + Delta-G solvation = -4198.267854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92481 -40.04434 -38.32426 -37.60487 -35.29370 -34.54770 -32.92714 -32.73084 -31.60288 -30.79736 -29.90159 -27.32144 -26.91500 -24.00329 -23.86800 -23.33161 -22.61255 -21.70746 -21.33571 -20.44191 -19.87935 -19.30486 -17.91117 -17.21144 -16.69688 -16.49684 -15.86049 -15.63212 -15.24414 -15.14909 -14.88133 -14.67944 -14.41914 -14.25640 -13.78292 -13.74719 -13.49288 -13.30514 -13.14167 -13.06508 -12.70536 -12.01018 -11.83752 -11.79234 -11.67933 -11.35555 -11.19975 -11.05030 -10.81569 -10.69543 -10.55297 -10.28551 -10.14779 -9.93479 -9.83494 -9.71383 -9.54014 -9.51592 -9.32477 -9.23705 -8.65754 -8.50572 -6.64253 -5.80331 -3.30557 1.01252 1.71012 2.75073 2.98344 3.00297 3.34377 3.37805 3.40065 3.41778 3.70420 3.98762 4.26644 4.41448 4.50271 4.54519 4.67738 4.77158 4.81391 4.99956 5.02980 5.05230 5.24077 5.34664 5.39347 5.44350 5.58624 5.59166 5.78073 5.83040 5.83451 5.83714 5.91359 6.03169 6.06090 6.19589 6.19809 6.33077 6.49813 6.57346 6.59375 6.82104 7.08007 7.20189 7.27264 7.52193 7.86497 7.93278 7.97251 8.39449 8.44803 9.17715 9.74646 10.33712 11.28460 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002292 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.065166 B =12215.804108 C =13531.035064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.585 5.585 10 C 0.149 3.851 11 C 0.033 3.967 12 O -0.389 6.389 13 C 0.063 3.937 14 C 0.224 3.776 15 H 0.065 0.935 16 C 0.256 3.744 17 N -0.259 5.259 18 N -0.483 5.483 19 H 0.435 0.565 20 C 0.241 3.759 21 C 0.208 3.792 22 N -0.721 5.721 23 C 0.547 3.453 24 O -0.532 6.532 25 C -0.218 4.218 26 C -0.030 4.030 27 C -0.129 4.129 28 C -0.187 4.187 29 C -0.156 4.156 30 N -0.514 5.514 31 H 0.254 0.746 32 H 0.092 0.908 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.405 0.595 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.035 -14.705 -8.205 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.105 0.895 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.045 4.045 12 O -0.307 6.307 13 C -0.017 4.017 14 C 0.115 3.885 15 H 0.082 0.918 16 C -0.026 4.026 17 N -0.087 5.087 18 N -0.202 5.202 19 H 0.280 0.720 20 C -0.038 4.038 21 C 0.082 3.918 22 N -0.375 5.375 23 C 0.337 3.663 24 O -0.411 6.411 25 C -0.239 4.239 26 C -0.049 4.049 27 C -0.147 4.147 28 C -0.224 4.224 29 C -0.193 4.193 30 N -0.243 5.243 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.240 0.760 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.592 -14.063 -8.401 22.616 hybrid contribution 1.114 1.348 0.363 1.786 sum 16.707 -12.715 -8.038 22.481 Atomic orbital electron populations 1.69971 1.05184 1.25601 1.54063 1.25234 0.95365 0.98321 1.00285 0.86362 0.78871 0.83417 0.77989 1.21204 1.21541 1.20916 1.19636 0.91723 0.82927 1.44445 0.89539 1.43941 1.33381 1.03248 1.50511 1.21422 0.88807 0.96575 0.90851 1.23398 0.99439 0.86766 0.94854 1.87811 1.41214 1.37066 1.64633 1.22858 0.87140 0.98192 0.93503 1.19527 0.86228 0.90048 0.92714 0.91767 1.24053 0.96093 0.93604 0.88876 1.78375 0.96447 1.21515 1.12378 1.48267 1.14803 1.45029 1.12109 0.72017 1.23893 0.91677 0.96166 0.92042 1.19495 0.96182 0.84907 0.91183 1.45866 1.53835 1.17461 1.20290 1.18591 0.78047 0.87422 0.82284 1.90785 1.60213 1.59204 1.30884 1.22539 1.04768 0.95906 1.00657 1.23123 0.92082 0.97276 0.92466 1.21562 0.99537 1.02538 0.91038 1.23088 1.04674 0.97089 0.97520 1.22802 0.95815 0.97607 1.03077 1.70295 1.10961 1.26641 1.16404 0.93555 0.88958 0.94919 0.93925 0.89923 0.89777 0.93349 0.89226 0.87721 0.76021 0.85147 0.85523 0.84956 0.88921 0.88588 0.88483 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 11.24 55.49 0.62 -25.59 16 2 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 3 Si 0.90 22.18 29.57 -169.99 -5.03 17.16 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -7.06 8.72 -15.06 -0.13 -7.19 16 8 H 0.09 2.36 4.95 -52.49 -0.26 2.10 16 9 N -0.59 -14.76 3.02 -165.61 -0.50 -15.26 16 10 C 0.15 3.54 5.36 -3.53 -0.02 3.52 16 11 C 0.03 0.66 6.99 37.31 0.26 0.92 16 12 O -0.39 -7.78 10.74 -35.23 -0.38 -8.16 16 13 C 0.06 1.20 6.27 37.31 0.23 1.43 16 14 C 0.22 4.93 3.62 -68.58 -0.25 4.68 16 15 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.26 5.28 6.14 -156.85 -0.96 4.32 16 17 N -0.26 -5.15 10.03 32.42 0.33 -4.82 16 18 N -0.48 -7.12 7.45 32.62 0.24 -6.87 16 19 H 0.44 4.71 8.96 -182.34 -1.63 3.08 16 20 C 0.24 3.50 7.61 -155.68 -1.18 2.32 16 21 C 0.21 2.30 6.30 -5.20 -0.03 2.27 16 22 N -0.72 -6.79 5.54 -62.68 -0.35 -7.14 16 23 C 0.55 5.58 7.66 -12.66 -0.10 5.48 16 24 O -0.53 -6.91 13.35 5.27 0.07 -6.84 16 25 C -0.22 -1.64 10.02 -37.80 -0.38 -2.02 16 26 C -0.03 -0.21 9.74 -36.13 -0.35 -0.57 16 27 C -0.13 -1.12 4.32 -91.77 -0.40 -1.51 16 28 C -0.19 -1.27 10.23 -26.73 -0.27 -1.55 16 29 C -0.16 -1.23 10.23 -26.73 -0.27 -1.51 16 30 N -0.51 -9.47 11.19 -8.15 -0.09 -9.56 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.09 2.39 6.45 -51.93 -0.34 2.05 16 33 H 0.03 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.41 3.28 8.45 -40.82 -0.34 2.94 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 1.45 6.29 -51.92 -0.33 1.13 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -34.16 388.97 -11.12 -45.28 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.95 Total: 5.23 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -3.94 Total: 10.71 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: 0.25 Total: -69.24 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.31 Total: -15.00 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.16 -11.12 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130842353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.274 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds