Wall clock time and date at job start Wed Apr 1 2020 04:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47003 * 240.00402 * 3 2 1 5 5 H 1.48500 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46706 * 120.00841 * 3 2 1 7 7 C 1.38808 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 169.90728 * 7 2 1 9 9 N 1.36939 * 119.99905 * 349.90076 * 7 2 1 10 10 C 1.47149 * 120.98097 * 327.01183 * 9 7 2 11 11 C 1.53300 * 108.38501 * 230.51177 * 10 9 7 12 12 O 1.42961 * 109.22172 * 307.70202 * 11 10 9 13 13 C 1.42968 * 114.20087 * 62.56444 * 12 11 10 14 14 C 1.47147 * 120.98154 * 146.99565 * 9 7 2 15 15 H 1.09005 * 109.68045 * 249.25107 * 14 9 7 16 16 C 1.50706 * 109.68311 * 9.75906 * 14 9 7 17 17 N 1.30712 * 125.52514 * 44.44512 * 16 14 9 18 18 N 1.40437 * 106.79462 * 179.78435 * 17 16 14 19 19 H 0.97001 * 126.82730 * 180.25940 * 18 17 16 20 20 C 1.34440 * 106.35323 * 0.40332 * 18 17 16 21 21 C 1.50698 * 125.96196 * 179.85987 * 20 18 17 22 22 N 1.46490 * 109.47240 * 94.69013 * 21 20 18 23 23 C 1.34781 * 119.99958 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00142 * 0.02562 * 23 22 21 25 25 C 1.47104 * 119.99829 * 180.02562 * 23 22 21 26 26 C 1.32996 * 119.99712 * 173.59807 * 25 23 22 27 27 C 1.50695 * 120.00145 * 352.35376 * 26 25 23 28 28 C 1.53000 * 117.50033 * 181.68977 * 27 26 25 29 29 C 1.53000 * 117.49956 * 113.06455 * 27 26 25 30 30 N 1.30835 * 108.07369 * 359.59359 * 20 18 17 31 31 H 0.97006 * 119.99871 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.68353 * 350.23793 * 10 9 7 33 33 H 1.09009 * 109.67720 * 110.79234 * 10 9 7 34 34 H 1.08996 * 109.51053 * 67.62511 * 11 10 9 35 35 H 1.09005 * 109.50823 * 187.77712 * 11 10 9 36 36 H 1.09005 * 109.54918 * 177.53151 * 13 12 11 37 37 H 1.09001 * 109.48563 * 57.38039 * 13 12 11 38 38 H 1.08997 * 109.46932 * 334.68748 * 21 20 18 39 39 H 1.09003 * 109.46695 * 214.69271 * 21 20 18 40 40 H 0.97004 * 120.00020 * 0.02562 * 22 21 20 41 41 H 1.07999 * 120.00116 * 353.58893 * 25 23 22 42 42 H 1.07998 * 119.99789 * 172.62783 * 26 25 23 43 43 H 1.09008 * 115.55057 * 327.39794 * 27 26 25 44 44 H 1.09004 * 117.49877 * 0.02562 * 28 27 26 45 45 H 1.09002 * 117.49836 * 145.01720 * 28 27 26 46 46 H 1.09003 * 117.49996 * 214.97744 * 29 27 26 47 47 H 1.08999 * 117.50137 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0777 -1.2094 -0.1644 9 7 1.3414 -2.3789 0.2069 10 6 0.1665 -2.4368 1.0909 11 6 0.3652 -3.5871 2.0846 12 8 0.6777 -4.7821 1.3648 13 6 1.8962 -4.7160 0.6200 14 6 1.7762 -3.6229 -0.4479 15 1 1.0415 -3.9199 -1.1964 16 6 3.1142 -3.4085 -1.1075 17 7 4.1342 -2.7901 -0.5728 18 7 5.1701 -2.8216 -1.5205 19 1 6.0601 -2.4488 -1.4216 20 6 4.6821 -3.4684 -2.5933 21 6 5.4276 -3.7479 -3.8728 22 7 6.0209 -5.0857 -3.8101 23 6 6.7387 -5.5541 -4.8503 24 8 6.8941 -4.8658 -5.8408 25 6 7.3341 -6.8978 -4.7875 26 6 7.9329 -7.4105 -5.8586 27 6 7.8530 -6.6938 -7.1819 28 6 8.5289 -7.3544 -8.3850 29 6 9.1486 -6.1090 -7.7479 30 7 3.4490 -3.8179 -2.3304 31 1 -0.4850 0.8401 0.0004 32 1 0.0682 -1.4963 1.6330 33 1 -0.7307 -2.6148 0.4979 34 1 1.1840 -3.3455 2.7621 35 1 -0.5504 -3.7357 2.6572 36 1 2.0822 -5.6763 0.1389 37 1 2.7209 -4.4792 1.2924 38 1 6.2158 -3.0065 -4.0034 39 1 4.7368 -3.6958 -4.7145 40 1 5.8967 -5.6349 -3.0201 41 1 7.2851 -7.4678 -3.8715 42 1 8.4726 -8.3427 -5.7811 43 1 6.9305 -6.1419 -7.3627 44 1 9.0311 -8.3077 -8.2196 45 1 8.0511 -7.2374 -9.3577 46 1 9.0784 -5.1726 -8.3015 47 1 10.0588 -6.2429 -7.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130842353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:58 Heat of formation + Delta-G solvation = 70.762292 kcal Electronic energy + Delta-G solvation = -30024.511932 eV Core-core repulsion = 25825.193292 eV Total energy + Delta-G solvation = -4199.318640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.29731 -40.83806 -39.98581 -38.23231 -36.58299 -35.99628 -34.39202 -33.47835 -33.10506 -32.50673 -31.38086 -28.82345 -28.36320 -25.47163 -25.25871 -24.70839 -23.16901 -22.89589 -22.24808 -21.81611 -21.07576 -20.64598 -19.22502 -18.48831 -17.98723 -17.49185 -17.35867 -16.82100 -16.49927 -16.28465 -16.12528 -15.92972 -15.90308 -15.63373 -15.24713 -15.14566 -14.68321 -14.56965 -14.27651 -14.15254 -13.88607 -13.38576 -13.15688 -13.03736 -12.87003 -12.72824 -12.63647 -12.38463 -12.30930 -12.19025 -11.95511 -11.91988 -11.46380 -11.29251 -11.17591 -11.06857 -10.97929 -10.65453 -10.57475 -10.34265 -10.17365 -9.89029 -8.65291 -7.89164 -5.41804 0.41350 0.44175 1.37874 1.39943 1.46758 1.55776 1.67382 2.27359 2.35680 2.44704 2.75013 2.99799 3.12263 3.27759 3.42105 3.62055 3.70151 3.79266 3.96959 4.09017 4.13552 4.20978 4.22585 4.36683 4.42419 4.48037 4.51868 4.58889 4.60571 4.62249 4.81331 4.88369 4.96581 5.03341 5.16915 5.19066 5.21717 5.26454 5.27634 5.30275 5.40278 5.57705 5.58895 5.78507 6.13937 6.24007 6.38270 6.50047 7.03776 7.12528 7.21406 7.72562 8.29541 9.17328 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002292 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.065166 B =12215.804108 C =13531.035064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.962 3.038 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.257 4.257 8 H 0.090 0.910 9 N -0.601 5.601 10 C 0.152 3.848 11 C 0.047 3.953 12 O -0.391 6.391 13 C 0.073 3.927 14 C 0.219 3.781 15 H 0.044 0.956 16 C 0.242 3.758 17 N -0.289 5.289 18 N -0.465 5.465 19 H 0.454 0.546 20 C 0.266 3.734 21 C 0.216 3.784 22 N -0.713 5.713 23 C 0.542 3.458 24 O -0.566 6.566 25 C -0.226 4.226 26 C -0.023 4.023 27 C -0.148 4.148 28 C -0.171 4.171 29 C -0.164 4.164 30 N -0.542 5.542 31 H 0.249 0.751 32 H 0.067 0.933 33 H 0.007 0.993 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.414 0.586 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.601 -16.598 -8.119 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.031 4.031 12 O -0.309 6.309 13 C -0.006 4.006 14 C 0.111 3.889 15 H 0.061 0.939 16 C -0.041 4.041 17 N -0.119 5.119 18 N -0.186 5.186 19 H 0.302 0.698 20 C -0.013 4.013 21 C 0.089 3.911 22 N -0.367 5.367 23 C 0.334 3.666 24 O -0.447 6.447 25 C -0.246 4.246 26 C -0.042 4.042 27 C -0.166 4.166 28 C -0.208 4.208 29 C -0.201 4.201 30 N -0.272 5.272 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.250 0.750 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.121 0.879 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.200 -15.982 -8.297 25.603 hybrid contribution 0.391 1.884 0.196 1.934 sum 18.591 -14.098 -8.101 24.698 Atomic orbital electron populations 1.70129 1.06378 1.25702 1.55902 1.25948 0.96147 1.01245 1.01114 0.85439 0.77635 0.79883 0.78006 1.21098 1.21830 1.20124 1.19944 0.92181 0.83846 1.42744 0.89287 1.44166 1.33339 1.03916 1.51288 1.21282 0.87740 0.97190 0.91107 1.23263 1.01131 0.85037 0.93626 1.87814 1.41727 1.36720 1.64650 1.22860 0.86721 0.98477 0.92572 1.19580 0.86768 0.89461 0.93127 0.93850 1.23759 0.95822 0.94764 0.89759 1.78201 0.97338 1.22149 1.14165 1.48094 1.14861 1.44493 1.11195 0.69764 1.24335 0.90603 0.94017 0.92371 1.19510 0.96304 0.86540 0.88750 1.45755 1.53454 1.16804 1.20667 1.19120 0.77612 0.88318 0.81598 1.90786 1.61460 1.60340 1.32074 1.22680 1.05023 0.94703 1.02207 1.23412 0.91542 0.97996 0.91289 1.21510 0.98612 1.03540 0.92955 1.23169 1.03440 0.97398 0.96753 1.22838 0.95908 0.97847 1.03469 1.70263 1.12917 1.28109 1.15893 0.94191 0.91503 0.97461 0.93393 0.86859 0.86800 0.93210 0.87177 0.88620 0.75010 0.82244 0.82272 0.87946 0.86808 0.88576 0.89649 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 11.24 21.65 0.24 -55.65 16 2 C -0.05 -2.80 5.06 84.86 0.43 -2.37 16 3 Si 0.96 46.18 29.57 68.60 2.03 48.21 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.26 -14.25 8.72 84.03 0.73 -13.51 16 8 H 0.09 4.86 4.95 -2.91 -0.01 4.85 16 9 N -0.60 -30.84 3.02 -677.86 -2.05 -32.89 16 10 C 0.15 7.43 5.36 86.36 0.46 7.89 16 11 C 0.05 1.81 6.99 72.08 0.50 2.32 16 12 O -0.39 -15.08 10.74 -148.98 -1.60 -16.68 16 13 C 0.07 2.69 6.27 72.08 0.45 3.14 16 14 C 0.22 9.72 3.62 44.22 0.16 9.88 16 15 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 16 C 0.24 9.89 6.14 138.63 0.85 10.74 16 17 N -0.29 -11.23 10.03 -51.33 -0.52 -11.74 16 18 N -0.47 -12.91 7.45 -50.70 -0.38 -13.28 16 19 H 0.45 8.76 8.96 -213.10 -1.91 6.85 16 20 C 0.27 7.33 7.61 138.22 1.05 8.38 16 21 C 0.22 4.42 6.30 85.63 0.54 4.96 16 22 N -0.71 -12.12 5.54 -470.47 -2.61 -14.73 16 23 C 0.54 10.29 7.66 86.57 0.66 10.95 16 24 O -0.57 -14.49 13.35 -4.06 -0.05 -14.55 16 25 C -0.23 -2.84 10.02 23.43 0.23 -2.60 16 26 C -0.02 -0.27 9.74 24.52 0.24 -0.03 16 27 C -0.15 -2.41 4.32 -11.54 -0.05 -2.46 16 28 C -0.17 -2.02 10.23 30.60 0.31 -1.71 16 29 C -0.16 -2.42 10.23 30.60 0.31 -2.11 16 30 N -0.54 -19.65 11.19 -179.71 -2.01 -21.66 16 31 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.07 3.58 6.45 -2.39 -0.02 3.57 16 33 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 36 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 37 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.41 5.74 8.45 -92.70 -0.78 4.95 16 41 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 43 H 0.10 2.31 6.29 -2.38 -0.01 2.30 16 44 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -76.10 388.97 -1.72 -77.82 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -1.67 Total: 21.70 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 6.90 Total: 33.47 kcal Atomic # 7 Polarization: -142.65 SS G_CDS: -7.32 Total: -149.97 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.65 Total: -31.23 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.10 -1.72 -77.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130842353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.581 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds