Wall clock time and date at job start Wed Apr 1 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00247 * 2 1 4 4 O 1.42105 * 104.27564 * 308.92478 * 3 2 1 5 5 O 1.42098 * 104.28100 * 181.06985 * 3 2 1 6 6 C 1.81401 * 104.45170 * 64.99494 * 3 2 1 7 7 C 1.53001 * 109.47081 * 180.02562 * 6 3 2 8 8 C 1.50700 * 109.46748 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00206 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62678 * 355.00982 * 10 8 7 12 12 C 1.53188 * 108.77309 * 233.58333 * 11 10 8 13 13 C 1.53037 * 109.31272 * 305.36530 * 12 11 10 14 14 C 1.53041 * 109.53952 * 61.37055 * 13 12 11 15 15 C 1.46922 * 120.63469 * 174.73070 * 10 8 7 16 16 H 1.09007 * 109.58622 * 246.20488 * 15 10 8 17 17 C 1.53001 * 109.58645 * 6.62231 * 15 10 8 18 18 N 1.46500 * 109.47310 * 181.24525 * 17 15 10 19 19 C 1.46493 * 119.99613 * 84.91067 * 18 17 15 20 20 C 1.36934 * 120.00266 * 264.90913 * 18 17 15 21 21 H 1.08009 * 119.99769 * 10.86482 * 20 18 17 22 22 C 1.38807 * 120.00200 * 190.86379 * 20 18 17 23 23 N 1.31619 * 119.99644 * 12.45639 * 22 20 18 24 24 Si 1.86800 * 120.00288 * 192.45822 * 22 20 18 25 25 H 1.48499 * 109.46769 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47159 * 119.99750 * 24 22 20 27 27 H 1.48490 * 109.47230 * 240.00222 * 24 22 20 28 28 H 1.09000 * 109.47248 * 300.00745 * 1 2 3 29 29 H 1.09007 * 109.46719 * 60.00614 * 1 2 3 30 30 H 1.09004 * 109.46869 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99951 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46815 * 60.00475 * 6 3 2 33 33 H 1.09002 * 109.46940 * 300.00792 * 6 3 2 34 34 H 1.08995 * 109.47090 * 60.00334 * 7 6 3 35 35 H 1.08996 * 109.46829 * 299.99827 * 7 6 3 36 36 H 1.09000 * 109.58959 * 353.37394 * 11 10 8 37 37 H 1.09004 * 109.58676 * 113.65379 * 11 10 8 38 38 H 1.09004 * 109.50008 * 65.31713 * 12 11 10 39 39 H 1.08999 * 109.49876 * 185.41325 * 12 11 10 40 40 H 1.09005 * 109.45678 * 181.38481 * 13 12 11 41 41 H 1.08994 * 109.46379 * 301.35760 * 13 12 11 42 42 H 1.08995 * 109.50098 * 58.58148 * 14 13 12 43 43 H 1.08996 * 109.49869 * 178.65266 * 14 13 12 44 44 H 1.08995 * 109.47161 * 301.25234 * 17 15 10 45 45 H 1.09007 * 109.46767 * 61.24747 * 17 15 10 46 46 H 1.09008 * 109.47601 * 354.89066 * 19 18 17 47 47 H 1.09005 * 109.47408 * 114.89358 * 19 18 17 48 48 H 1.09002 * 109.47169 * 234.89600 * 19 18 17 49 49 H 0.97003 * 119.99509 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8764 2.1974 1.5920 7 6 2.5890 3.5459 1.7130 8 6 2.2433 4.1797 3.0358 9 8 1.4998 3.6093 3.8057 10 7 2.7604 5.3805 3.3634 11 6 3.7465 6.0338 2.4918 12 6 4.9825 6.3879 3.3245 13 6 4.5564 7.2273 4.5311 14 6 3.6001 6.4152 5.4075 15 6 2.3442 6.0639 4.5956 16 1 1.8024 6.9754 4.3428 17 6 1.4428 5.1389 5.4157 18 7 1.0053 5.8333 6.6292 19 6 -0.1669 6.7110 6.5884 20 6 1.6919 5.6620 7.8015 21 1 2.6492 5.1618 7.7985 22 6 1.1577 6.1311 8.9937 23 7 -0.1000 6.5157 9.0450 24 14 2.2237 6.2166 10.5252 25 1 3.5899 5.7305 10.2051 26 1 2.2974 7.6220 10.9992 27 1 1.6317 5.3659 11.5886 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9499 -0.8401 0.0004 32 1 2.1958 1.5432 2.4032 33 1 0.7986 2.3497 1.6509 34 1 2.2693 4.1999 0.9018 35 1 3.6667 3.3939 1.6540 36 1 4.0300 5.3549 1.6875 37 1 3.3159 6.9415 2.0689 38 1 5.4632 5.4725 3.6697 39 1 5.6819 6.9583 2.7133 40 1 5.4371 7.5013 5.1121 41 1 4.0536 8.1306 4.1858 42 1 4.0937 5.4995 5.7330 43 1 3.3158 7.0048 6.2790 44 1 0.5719 4.8604 4.8224 45 1 1.9972 4.2414 5.6906 46 1 -0.5237 6.7935 5.5617 47 1 -0.9554 6.2936 7.2147 48 1 0.1061 7.6993 6.9585 49 1 -0.4734 6.8431 9.8782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157981204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:24 Heat of formation + Delta-G solvation = -64.963512 kcal Electronic energy + Delta-G solvation = -30172.134046 eV Core-core repulsion = 26070.081094 eV Total energy + Delta-G solvation = -4102.052952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.38336 -37.40590 -37.34259 -36.27174 -35.54077 -35.34187 -33.61365 -32.59724 -31.78128 -30.02176 -26.78146 -26.34597 -25.89350 -25.21510 -24.19668 -22.33660 -20.69516 -20.42518 -19.64051 -18.98491 -18.01612 -17.27298 -16.76165 -16.60582 -16.16876 -15.81427 -15.61303 -15.09828 -14.72712 -14.40951 -14.24725 -14.11394 -13.94245 -13.65669 -13.22186 -13.20304 -13.17381 -12.87231 -12.69048 -12.45699 -12.40175 -12.30119 -12.22941 -11.97960 -11.78992 -11.65512 -11.15768 -11.12906 -11.01704 -10.78676 -10.69244 -10.58741 -10.41596 -10.27612 -10.05707 -9.94417 -9.84758 -9.69607 -8.94342 -8.49826 -8.25366 -6.74297 -5.53951 -3.00955 -0.07185 2.37389 2.72468 3.07168 3.41689 3.46062 3.48828 3.50418 3.92147 4.12412 4.47628 4.52111 4.58302 4.63010 4.76095 4.93862 5.01488 5.06391 5.10768 5.18587 5.33710 5.37260 5.37911 5.48138 5.51250 5.52549 5.57829 5.72775 5.89352 5.92971 5.98911 6.11998 6.15427 6.42249 6.47679 6.53541 6.69807 6.83364 6.90963 6.99591 7.28498 7.54730 7.61637 7.84229 8.00359 8.34071 8.51129 9.35484 10.01201 10.45102 11.42907 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002816 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.852010 B = 9939.817200 C =10992.876644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.614 3.386 4 O -0.956 6.956 5 O -0.958 6.958 6 C -0.610 4.610 7 C -0.136 4.136 8 C 0.516 3.484 9 O -0.517 6.517 10 N -0.604 5.604 11 C 0.103 3.897 12 C -0.134 4.134 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.122 3.878 16 H 0.063 0.937 17 C 0.166 3.834 18 N -0.608 5.608 19 C 0.157 3.843 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.914 5.914 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.418 0.582 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.058 0.942 46 H -0.007 1.007 47 H 0.064 0.936 48 H 0.017 0.983 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -7.500 -20.161 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.705 3.295 4 O -0.945 6.945 5 O -0.949 6.949 6 C -0.739 4.739 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.393 6.393 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.172 4.172 13 C -0.159 4.159 14 C -0.158 4.158 15 C 0.017 3.983 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.332 5.332 19 C 0.013 3.987 20 C -0.367 4.367 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.562 5.562 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.220 1.220 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.012 0.988 47 H 0.082 0.918 48 H 0.036 0.964 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.521 -7.279 -20.291 22.253 hybrid contribution 0.510 -0.106 1.535 1.621 sum 6.031 -7.385 -18.756 21.040 Atomic orbital electron populations 1.21547 0.78549 1.04412 1.02202 1.55346 1.16110 1.24539 1.92239 1.04931 0.73689 0.73956 0.76894 1.93606 1.78811 1.72298 1.49829 1.93612 1.32710 1.81226 1.87320 1.30386 1.12055 1.07748 1.23736 1.21442 1.02223 0.94753 0.99359 1.20085 0.80976 0.81241 0.87558 1.90817 1.36358 1.61747 1.50387 1.48367 1.42263 1.19106 1.24132 1.21773 0.89416 0.98129 0.92743 1.21909 0.96768 1.00815 0.97701 1.21578 0.99638 0.98402 0.96327 1.21964 0.94635 1.00389 0.98800 1.22646 0.96240 0.97030 0.82358 0.91850 1.21376 0.96110 0.91713 0.86971 1.44296 1.31705 1.51986 1.05169 1.21062 0.90319 0.93508 0.93809 1.19319 0.99972 1.32656 0.84779 0.91026 1.24846 0.95926 1.02237 0.97455 1.70122 1.11430 1.49582 1.25035 0.86206 0.79707 0.77213 0.83649 1.20561 1.21844 1.21963 0.91850 0.91286 0.89914 0.74844 0.83903 0.84124 0.87635 0.87686 0.90302 0.91265 0.91569 0.91154 0.92108 0.92202 0.92341 0.88811 0.92262 0.92355 0.98816 0.91798 0.96399 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.03 59.84 0.66 1.07 16 2 N -1.12 -7.17 6.08 -16.63 -0.10 -7.27 16 3 S 2.61 22.70 5.46 -107.50 -0.59 22.11 16 4 O -0.96 -11.13 17.73 -57.54 -1.02 -12.15 16 5 O -0.96 -11.08 18.08 -57.54 -1.04 -12.12 16 6 C -0.61 -5.31 5.31 37.16 0.20 -5.11 16 7 C -0.14 -1.34 4.11 -27.88 -0.11 -1.46 16 8 C 0.52 7.44 7.61 -10.99 -0.08 7.36 16 9 O -0.52 -9.39 11.39 5.55 0.06 -9.33 16 10 N -0.60 -8.60 2.97 -164.96 -0.49 -9.09 16 11 C 0.10 1.06 6.33 -3.71 -0.02 1.04 16 12 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 13 C -0.12 -1.58 5.88 -26.69 -0.16 -1.73 16 14 C -0.12 -2.05 4.69 -26.39 -0.12 -2.17 16 15 C 0.12 2.17 3.20 -67.38 -0.22 1.95 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.17 3.64 3.51 -4.04 -0.01 3.63 16 18 N -0.61 -15.58 2.68 -181.12 -0.49 -16.07 16 19 C 0.16 4.03 9.04 59.84 0.54 4.57 16 20 C -0.24 -6.54 8.24 -15.06 -0.12 -6.67 16 21 H 0.07 1.94 7.79 -52.48 -0.41 1.53 16 22 C -0.01 -0.24 5.32 -17.43 -0.09 -0.33 16 23 N -0.91 -26.99 9.96 55.49 0.55 -26.44 16 24 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H 0.06 0.28 7.73 -51.93 -0.40 -0.12 16 29 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.42 2.01 8.92 -34.47 -0.31 1.71 16 32 H 0.14 1.21 8.10 -51.92 -0.42 0.79 16 33 H 0.14 1.15 7.73 -51.92 -0.40 0.75 16 34 H 0.11 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.10 0.83 7.48 -51.93 -0.39 0.44 16 36 H 0.08 0.60 5.96 -51.93 -0.31 0.29 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 44 H 0.06 1.36 6.27 -51.93 -0.33 1.03 16 45 H 0.06 1.38 6.99 -51.93 -0.36 1.02 16 46 H -0.01 -0.16 7.90 -51.92 -0.41 -0.57 16 47 H 0.06 1.81 6.43 -51.93 -0.33 1.48 16 48 H 0.02 0.47 7.81 -51.93 -0.41 0.07 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -36.93 391.27 -10.14 -47.07 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.19 Total: -0.35 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 0.29 Total: 0.58 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.52 Total: -58.87 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -2.00 Total: -33.60 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.59 Total: 22.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.93 -10.14 -47.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157981204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.889 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds