Wall clock time and date at job start Wed Apr 1 2020 04:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00247 * 2 1 4 4 O 1.42105 * 104.27564 * 308.92478 * 3 2 1 5 5 O 1.42098 * 104.28100 * 181.06985 * 3 2 1 6 6 C 1.81401 * 104.45170 * 64.99494 * 3 2 1 7 7 C 1.53001 * 109.47081 * 180.02562 * 6 3 2 8 8 C 1.50700 * 109.46748 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00206 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.62678 * 355.00982 * 10 8 7 12 12 C 1.53188 * 108.77309 * 233.58333 * 11 10 8 13 13 C 1.53037 * 109.31272 * 305.36530 * 12 11 10 14 14 C 1.53041 * 109.53952 * 61.37055 * 13 12 11 15 15 C 1.46922 * 120.63469 * 174.73070 * 10 8 7 16 16 H 1.09007 * 109.58622 * 246.20488 * 15 10 8 17 17 C 1.53001 * 109.58645 * 6.62231 * 15 10 8 18 18 N 1.46500 * 109.47310 * 181.24525 * 17 15 10 19 19 C 1.46493 * 119.99613 * 84.91067 * 18 17 15 20 20 C 1.36934 * 120.00266 * 264.90913 * 18 17 15 21 21 H 1.08009 * 119.99769 * 10.86482 * 20 18 17 22 22 C 1.38807 * 120.00200 * 190.86379 * 20 18 17 23 23 N 1.31619 * 119.99644 * 12.45639 * 22 20 18 24 24 Si 1.86800 * 120.00288 * 192.45822 * 22 20 18 25 25 H 1.48499 * 109.46769 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47159 * 119.99750 * 24 22 20 27 27 H 1.48490 * 109.47230 * 240.00222 * 24 22 20 28 28 H 1.09000 * 109.47248 * 300.00745 * 1 2 3 29 29 H 1.09007 * 109.46719 * 60.00614 * 1 2 3 30 30 H 1.09004 * 109.46869 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99951 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46815 * 60.00475 * 6 3 2 33 33 H 1.09002 * 109.46940 * 300.00792 * 6 3 2 34 34 H 1.08995 * 109.47090 * 60.00334 * 7 6 3 35 35 H 1.08996 * 109.46829 * 299.99827 * 7 6 3 36 36 H 1.09000 * 109.58959 * 353.37394 * 11 10 8 37 37 H 1.09004 * 109.58676 * 113.65379 * 11 10 8 38 38 H 1.09004 * 109.50008 * 65.31713 * 12 11 10 39 39 H 1.08999 * 109.49876 * 185.41325 * 12 11 10 40 40 H 1.09005 * 109.45678 * 181.38481 * 13 12 11 41 41 H 1.08994 * 109.46379 * 301.35760 * 13 12 11 42 42 H 1.08995 * 109.50098 * 58.58148 * 14 13 12 43 43 H 1.08996 * 109.49869 * 178.65266 * 14 13 12 44 44 H 1.08995 * 109.47161 * 301.25234 * 17 15 10 45 45 H 1.09007 * 109.46767 * 61.24747 * 17 15 10 46 46 H 1.09008 * 109.47601 * 354.89066 * 19 18 17 47 47 H 1.09005 * 109.47408 * 114.89358 * 19 18 17 48 48 H 1.09002 * 109.47169 * 234.89600 * 19 18 17 49 49 H 0.97003 * 119.99509 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8764 2.1974 1.5920 7 6 2.5890 3.5459 1.7130 8 6 2.2433 4.1797 3.0358 9 8 1.4998 3.6093 3.8057 10 7 2.7604 5.3805 3.3634 11 6 3.7465 6.0338 2.4918 12 6 4.9825 6.3879 3.3245 13 6 4.5564 7.2273 4.5311 14 6 3.6001 6.4152 5.4075 15 6 2.3442 6.0639 4.5956 16 1 1.8024 6.9754 4.3428 17 6 1.4428 5.1389 5.4157 18 7 1.0053 5.8333 6.6292 19 6 -0.1669 6.7110 6.5884 20 6 1.6919 5.6620 7.8015 21 1 2.6492 5.1618 7.7985 22 6 1.1577 6.1311 8.9937 23 7 -0.1000 6.5157 9.0450 24 14 2.2237 6.2166 10.5252 25 1 3.5899 5.7305 10.2051 26 1 2.2974 7.6220 10.9992 27 1 1.6317 5.3659 11.5886 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9499 -0.8401 0.0004 32 1 2.1958 1.5432 2.4032 33 1 0.7986 2.3497 1.6509 34 1 2.2693 4.1999 0.9018 35 1 3.6667 3.3939 1.6540 36 1 4.0300 5.3549 1.6875 37 1 3.3159 6.9415 2.0689 38 1 5.4632 5.4725 3.6697 39 1 5.6819 6.9583 2.7133 40 1 5.4371 7.5013 5.1121 41 1 4.0536 8.1306 4.1858 42 1 4.0937 5.4995 5.7330 43 1 3.3158 7.0048 6.2790 44 1 0.5719 4.8604 4.8224 45 1 1.9972 4.2414 5.6906 46 1 -0.5237 6.7935 5.5617 47 1 -0.9554 6.2936 7.2147 48 1 0.1061 7.6993 6.9585 49 1 -0.4734 6.8431 9.8782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157981204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:23 Heat of formation + Delta-G solvation = -93.159196 kcal Electronic energy + Delta-G solvation = -30173.356703 eV Core-core repulsion = 26070.081094 eV Total energy + Delta-G solvation = -4103.275609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57629 -38.56985 -38.20348 -37.34423 -37.07320 -35.85731 -34.70713 -33.75618 -33.36166 -31.63361 -28.13259 -27.99740 -26.79791 -26.49445 -25.23934 -23.89102 -22.10296 -21.77630 -20.34920 -20.02654 -18.81231 -18.73300 -18.09576 -17.43979 -17.19294 -17.10401 -16.62871 -16.44769 -15.88736 -15.54063 -15.39667 -15.18755 -15.02392 -14.86674 -14.61997 -14.42749 -14.33454 -13.96568 -13.77048 -13.72196 -13.44771 -13.26521 -13.23390 -13.12412 -12.82889 -12.71575 -12.66485 -12.54377 -12.45830 -12.21112 -12.10223 -11.98878 -11.90716 -11.85467 -11.69979 -11.52552 -11.34622 -10.70629 -10.47627 -10.24611 -9.48307 -8.83572 -7.70076 -5.19558 -0.77296 1.44511 1.44913 1.55387 1.63084 1.74286 2.00750 2.53040 2.74735 3.23538 3.31901 3.34938 3.59195 3.82009 3.83275 3.92835 3.98213 4.06657 4.17782 4.21995 4.30344 4.38329 4.49260 4.51993 4.65372 4.66528 4.71104 4.79992 4.83000 4.84425 4.94554 5.02374 5.04094 5.07484 5.14564 5.19139 5.27403 5.34883 5.44091 5.52114 5.63273 5.74847 5.83218 6.11166 6.33624 6.51501 7.17468 7.23545 7.93158 8.32910 9.25645 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002816 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.852010 B = 9939.817200 C =10992.876644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.643 3.357 4 O -0.983 6.983 5 O -0.986 6.986 6 C -0.608 4.608 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.565 6.565 10 N -0.606 5.606 11 C 0.094 3.906 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.113 4.113 15 C 0.134 3.866 16 H 0.059 0.941 17 C 0.176 3.824 18 N -0.623 5.623 19 C 0.175 3.825 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.065 4.065 23 N -0.944 5.944 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.295 1.295 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.426 0.574 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.035 0.965 46 H 0.019 0.981 47 H 0.034 0.966 48 H -0.002 1.002 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -7.654 -22.422 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.735 3.265 4 O -0.973 6.973 5 O -0.976 6.976 6 C -0.738 4.738 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.444 6.444 10 N -0.339 5.339 11 C -0.027 4.027 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.151 4.151 15 C 0.028 3.972 16 H 0.077 0.923 17 C 0.051 3.949 18 N -0.347 5.347 19 C 0.030 3.970 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.258 4.258 23 N -0.594 5.594 24 Si 0.795 3.205 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.222 1.222 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.262 0.738 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.460 -7.443 -22.621 24.955 hybrid contribution -0.113 -0.139 2.178 2.186 sum 7.347 -7.582 -20.442 23.008 Atomic orbital electron populations 1.21773 0.77609 1.06008 1.02419 1.55126 1.16739 1.24142 1.91958 1.03932 0.72702 0.73767 0.76104 1.93571 1.79182 1.73368 1.51190 1.93571 1.34625 1.81741 1.87653 1.30387 1.12359 1.07417 1.23646 1.21576 1.04068 0.95254 0.96951 1.20900 0.79985 0.80829 0.88737 1.90793 1.38445 1.62926 1.52203 1.48399 1.43043 1.19230 1.23259 1.22174 0.88262 0.99514 0.92770 1.21913 0.97380 1.00566 0.96814 1.21539 0.98703 0.98324 0.96861 1.21802 0.95272 0.99684 0.98367 1.22019 0.95692 0.95673 0.83779 0.92285 1.21279 0.96210 0.91458 0.85978 1.44528 1.31806 1.52313 1.06101 1.20729 0.89537 0.92213 0.94475 1.19531 0.99800 1.31849 0.85640 0.91191 1.25614 0.97140 1.02735 1.00323 1.70317 1.12846 1.50849 1.25397 0.85194 0.78566 0.76889 0.79844 1.19289 1.21754 1.22236 0.91142 0.91662 0.87747 0.73818 0.83848 0.83746 0.84898 0.85104 0.86711 0.89582 0.92027 0.87608 0.91381 0.91525 0.94028 0.92602 0.93304 0.94648 0.96257 0.94798 0.98295 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 11.03 127.77 1.41 1.99 16 2 N -1.12 -12.32 6.08 -206.54 -1.25 -13.58 16 3 S 2.64 40.93 5.46 -56.49 -0.31 40.62 16 4 O -0.98 -21.07 17.73 -127.65 -2.26 -23.33 16 5 O -0.99 -20.90 18.08 -127.65 -2.31 -23.21 16 6 C -0.61 -9.51 5.31 71.98 0.38 -9.13 16 7 C -0.14 -2.32 4.11 29.85 0.12 -2.20 16 8 C 0.51 13.96 7.61 87.66 0.67 14.63 16 9 O -0.56 -20.71 11.39 -3.04 -0.03 -20.75 16 10 N -0.61 -16.19 2.97 -794.20 -2.36 -18.55 16 11 C 0.09 1.57 6.33 86.36 0.55 2.11 16 12 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 13 C -0.12 -2.78 5.88 30.62 0.18 -2.60 16 14 C -0.11 -3.88 4.69 30.82 0.14 -3.74 16 15 C 0.13 4.76 3.20 45.12 0.14 4.91 16 16 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 17 C 0.18 8.00 3.51 86.38 0.30 8.31 16 18 N -0.62 -33.09 2.68 -726.93 -1.95 -35.04 16 19 C 0.18 9.30 9.04 127.77 1.15 10.45 16 20 C -0.24 -13.52 8.24 84.03 0.69 -12.83 16 21 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 22 C -0.07 -3.77 5.32 84.86 0.45 -3.32 16 23 N -0.94 -57.66 9.96 21.65 0.22 -57.44 16 24 Si 0.97 46.63 29.57 68.60 2.03 48.65 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 28 H 0.07 0.51 7.73 -2.39 -0.02 0.49 16 29 H 0.06 0.63 8.04 -2.38 -0.02 0.61 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.43 3.35 8.92 -96.75 -0.86 2.49 16 32 H 0.14 2.26 8.10 -2.39 -0.02 2.24 16 33 H 0.14 2.16 7.73 -2.39 -0.02 2.14 16 34 H 0.13 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.13 1.55 7.48 -2.39 -0.02 1.53 16 36 H 0.11 1.14 5.96 -2.39 -0.01 1.12 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 2.33 7.00 -2.39 -0.02 2.31 16 44 H 0.05 2.31 6.27 -2.39 -0.01 2.30 16 45 H 0.04 1.75 6.99 -2.38 -0.02 1.73 16 46 H 0.02 0.88 7.90 -2.38 -0.02 0.87 16 47 H 0.03 2.00 6.43 -2.38 -0.02 1.99 16 48 H 0.00 -0.08 7.81 -2.39 -0.02 -0.10 16 49 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -83.29 391.27 -1.77 -85.06 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.08 Total: 10.99 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.38 Total: 6.58 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.35 Total: -124.61 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -4.61 Total: -67.29 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.31 Total: 40.62 kcal Total: -83.29 -1.77 -85.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157981204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.101 kcal (2) G-P(sol) polarization free energy of solvation -83.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds