Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47135 * 270.00644 * 3 2 1 5 5 H 1.48497 * 109.47187 * 30.00290 * 3 2 1 6 6 H 1.48498 * 109.47186 * 150.00571 * 3 2 1 7 7 C 1.38955 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99611 * 359.97438 * 7 2 1 9 9 N 1.37087 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00226 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99676 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00644 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47559 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00306 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47496 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47473 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47551 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 15 19 19 O 1.21552 * 120.00341 * 359.97438 * 18 17 16 20 20 C 1.47836 * 119.99800 * 179.97438 * 18 17 16 21 21 C 1.39948 * 120.93999 * 359.72080 * 20 18 17 22 22 N 1.32147 * 118.92164 * 179.73351 * 21 20 18 23 23 C 1.31872 * 120.96680 * 0.53005 * 22 21 20 24 24 C 1.50706 * 118.95350 * 179.71935 * 23 22 21 25 25 C 1.53004 * 117.49617 * 8.64449 * 24 23 22 26 26 C 1.52996 * 117.49651 * 300.02271 * 24 23 22 27 27 N 1.31872 * 122.09511 * 359.74337 * 23 22 21 28 28 C 1.32139 * 120.96942 * 359.97438 * 27 23 22 29 29 H 0.96994 * 119.99763 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00083 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46667 * 59.99646 * 12 10 9 32 32 H 1.09002 * 109.47031 * 300.00080 * 12 10 9 33 33 H 1.00904 * 110.99691 * 303.95567 * 13 12 10 34 34 H 1.09000 * 109.47017 * 60.00110 * 14 13 12 35 35 H 1.08996 * 109.47227 * 300.00430 * 14 13 12 36 36 H 1.09000 * 109.46870 * 60.00053 * 15 14 13 37 37 H 1.09004 * 109.47108 * 300.00159 * 15 14 13 38 38 H 1.09000 * 109.47250 * 60.00015 * 16 15 14 39 39 H 1.09004 * 109.46862 * 300.00038 * 16 15 14 40 40 H 0.96999 * 119.99694 * 359.97438 * 17 16 15 41 41 H 1.07995 * 120.54051 * 359.97115 * 21 20 18 42 42 H 1.08998 * 115.54951 * 154.34808 * 24 23 22 43 43 H 1.09002 * 117.50102 * 0.02562 * 25 24 23 44 44 H 1.09000 * 117.49502 * 145.02066 * 25 24 23 45 45 H 1.09005 * 117.49969 * 214.97488 * 26 24 23 46 46 H 1.08997 * 117.50469 * 359.97438 * 26 24 23 47 47 H 1.07996 * 120.54439 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5607 -2.3707 -0.0022 13 7 6.0504 -3.7556 -0.0014 14 6 7.5188 -3.7949 -0.0019 15 6 7.9902 -5.2504 -0.0003 16 6 9.5195 -5.2913 -0.0002 17 7 9.9709 -6.6850 0.0007 18 6 11.2889 -6.9666 0.0015 19 8 12.1032 -6.0641 0.0010 20 6 11.7443 -8.3731 0.0030 21 6 10.8239 -9.4273 0.0094 22 7 11.2749 -10.6694 0.0051 23 6 12.5694 -10.9213 0.0054 24 6 13.0337 -12.3550 0.0068 25 6 11.9747 -13.4407 -0.1961 26 6 12.6052 -13.2351 1.1827 27 7 13.4705 -9.9585 0.0049 28 6 13.1080 -8.6878 0.0036 29 1 -0.4849 0.8400 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9247 -1.8564 0.8873 32 1 5.9234 -1.8572 -0.8927 33 1 5.6754 -4.2712 0.7808 34 1 7.8960 -3.2903 0.8876 35 1 7.8954 -3.2916 -0.8923 36 1 7.6129 -5.7554 -0.8896 37 1 7.6135 -5.7533 0.8904 38 1 9.8964 -4.7864 0.8893 39 1 9.8965 -4.7883 -0.8907 40 1 9.3211 -7.4052 0.0015 41 1 9.7623 -9.2290 0.0139 42 1 14.0218 -12.5296 -0.4187 43 1 10.9424 -13.1179 -0.3311 44 1 12.2663 -14.3297 -0.7553 45 1 13.3114 -13.9890 1.5307 46 1 11.9880 -12.7771 1.9555 47 1 13.8518 -7.9048 0.0037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167718317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = 7.590983 kcal Electronic energy + Delta-G solvation = -27604.690431 eV Core-core repulsion = 23402.632477 eV Total energy + Delta-G solvation = -4202.057954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90546 -39.94384 -38.54303 -37.58156 -36.74672 -35.21441 -34.38332 -33.92833 -32.82039 -31.72056 -31.25041 -27.64469 -26.37230 -25.25635 -24.70804 -23.22279 -22.90279 -22.21726 -21.89424 -21.03044 -19.41369 -18.60465 -18.43059 -18.27464 -17.30139 -16.56911 -16.35477 -15.90680 -15.87377 -15.60973 -15.25780 -14.98200 -14.90260 -14.70376 -14.41057 -14.26805 -14.06096 -13.64153 -13.25320 -12.98137 -12.85105 -12.41480 -12.23566 -12.20974 -12.02474 -11.98169 -11.79349 -11.60147 -11.55009 -11.45904 -11.23092 -11.08955 -11.06635 -10.61577 -10.46849 -9.99810 -9.98115 -9.88699 -9.59739 -9.56225 -8.63992 -8.23854 -8.18832 -6.33391 -3.84970 -0.21242 0.42495 2.24284 2.50829 2.98327 3.00664 3.05387 3.07508 3.13627 3.33015 3.57502 3.70867 3.81351 3.97940 4.08123 4.09526 4.25720 4.28938 4.38731 4.42659 4.66294 4.68472 4.72465 4.89512 4.95864 5.10769 5.11106 5.19239 5.25572 5.26942 5.34789 5.47494 5.50123 5.58340 5.61787 5.67186 5.76020 5.78588 5.86565 5.90209 5.96614 6.25076 6.88581 7.01158 7.39553 7.49719 7.55795 7.60378 8.11948 8.57225 8.92488 9.39959 9.79832 10.79700 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.001261 C = 0.001209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.892773 B =22197.002006 C =23155.816046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.063 3.937 15 C -0.131 4.131 16 C 0.121 3.879 17 N -0.721 5.721 18 C 0.570 3.430 19 O -0.529 6.529 20 C -0.252 4.252 21 C 0.190 3.810 22 N -0.518 5.518 23 C 0.371 3.629 24 C -0.112 4.112 25 C -0.150 4.150 26 C -0.152 4.152 27 N -0.517 5.517 28 C 0.215 3.785 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.351 0.649 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.401 0.599 41 H 0.174 0.826 42 H 0.133 0.867 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.663 -20.611 1.230 35.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.169 4.169 16 C -0.003 4.003 17 N -0.373 5.373 18 C 0.355 3.645 19 O -0.406 6.406 20 C -0.259 4.259 21 C 0.022 3.978 22 N -0.232 5.232 23 C 0.106 3.894 24 C -0.132 4.132 25 C -0.188 4.188 26 C -0.190 4.190 27 N -0.229 5.229 28 C 0.047 3.953 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.191 0.809 42 H 0.151 0.849 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 28.866 -21.535 0.542 36.018 hybrid contribution 0.104 2.449 0.889 2.607 sum 28.970 -19.086 1.431 34.722 Atomic orbital electron populations 1.69622 1.05656 1.27530 1.49262 1.25040 0.95488 0.97980 0.97583 0.86669 0.79742 0.84016 0.78936 1.19565 1.20166 1.19533 1.19436 0.79247 0.96656 1.48174 0.86274 1.42202 1.07548 1.06172 1.66997 1.19704 0.88191 0.84574 0.84069 1.90564 1.69442 1.30945 1.53806 1.21705 0.95060 0.90319 1.01392 1.60040 1.05808 1.12921 1.51409 1.21821 0.88722 0.95296 1.00919 1.21761 0.92988 0.98268 1.03905 1.21407 0.94619 0.81245 1.03011 1.45884 1.06599 1.09728 1.75078 1.17726 0.82694 0.87358 0.76715 1.90818 1.53264 1.47099 1.49431 1.21775 0.97384 0.95802 1.10959 1.23483 1.00475 0.86876 0.86919 1.68168 1.17086 1.22607 1.15291 1.22459 0.84609 0.95184 0.87157 1.20746 1.01005 0.84346 1.07073 1.23071 0.98724 0.98115 0.98900 1.23015 1.03273 1.00946 0.91763 1.68312 1.39037 1.00448 1.15150 1.23542 0.93784 0.93310 0.84618 0.91588 0.79662 0.93682 0.89385 0.82992 0.95138 0.90663 0.89901 0.91060 0.90988 0.90753 0.76384 0.80921 0.84925 0.86977 0.87846 0.87590 0.88412 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 2 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 3 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.87 5.09 -10.96 -0.06 -13.92 16 10 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 11 O -0.57 -14.94 15.78 5.54 0.09 -14.85 16 12 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 13 N -0.67 -9.54 6.13 -115.06 -0.70 -10.24 16 14 C 0.06 0.62 5.68 -3.83 -0.02 0.60 16 15 C -0.13 -1.00 5.59 -26.74 -0.15 -1.15 16 16 C 0.12 0.89 5.67 -4.05 -0.02 0.87 16 17 N -0.72 -4.76 5.51 -61.26 -0.34 -5.10 16 18 C 0.57 4.99 7.79 -12.33 -0.10 4.89 16 19 O -0.53 -6.44 16.45 5.32 0.09 -6.36 16 20 C -0.25 -1.91 5.91 -104.69 -0.62 -2.52 16 21 C 0.19 1.21 10.81 -16.78 -0.18 1.03 16 22 N -0.52 -4.07 9.32 -10.39 -0.10 -4.17 16 23 C 0.37 3.07 7.31 -157.06 -1.15 1.92 16 24 C -0.11 -0.67 6.23 -91.77 -0.57 -1.25 16 25 C -0.15 -0.70 10.01 -26.73 -0.27 -0.97 16 26 C -0.15 -0.71 10.23 -26.73 -0.27 -0.98 16 27 N -0.52 -4.63 10.31 -10.39 -0.11 -4.73 16 28 C 0.21 1.76 10.88 -16.78 -0.18 1.57 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.35 5.14 8.43 -39.29 -0.33 4.81 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 1.62 6.61 -40.82 -0.27 1.35 16 41 H 0.17 0.53 6.54 -52.49 -0.34 0.18 16 42 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.63 7.53 -51.93 -0.39 0.24 16 44 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.18 1.28 7.74 -52.49 -0.41 0.87 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -35.93 402.78 -9.50 -45.43 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.61 Total: 11.26 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.90 Total: 6.94 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.53 Total: -62.95 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.17 Total: -21.21 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.93 -9.50 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167718317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.026 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds