Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47135 * 270.00644 * 3 2 1 5 5 H 1.48497 * 109.47187 * 30.00290 * 3 2 1 6 6 H 1.48498 * 109.47186 * 150.00571 * 3 2 1 7 7 C 1.38955 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99611 * 359.97438 * 7 2 1 9 9 N 1.37087 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00226 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99676 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00644 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47559 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00306 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47496 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47473 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47551 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 15 19 19 O 1.21552 * 120.00341 * 359.97438 * 18 17 16 20 20 C 1.47836 * 119.99800 * 179.97438 * 18 17 16 21 21 C 1.39948 * 120.93999 * 359.72080 * 20 18 17 22 22 N 1.32147 * 118.92164 * 179.73351 * 21 20 18 23 23 C 1.31872 * 120.96680 * 0.53005 * 22 21 20 24 24 C 1.50706 * 118.95350 * 179.71935 * 23 22 21 25 25 C 1.53004 * 117.49617 * 8.64449 * 24 23 22 26 26 C 1.52996 * 117.49651 * 300.02271 * 24 23 22 27 27 N 1.31872 * 122.09511 * 359.74337 * 23 22 21 28 28 C 1.32139 * 120.96942 * 359.97438 * 27 23 22 29 29 H 0.96994 * 119.99763 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00083 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46667 * 59.99646 * 12 10 9 32 32 H 1.09002 * 109.47031 * 300.00080 * 12 10 9 33 33 H 1.00904 * 110.99691 * 303.95567 * 13 12 10 34 34 H 1.09000 * 109.47017 * 60.00110 * 14 13 12 35 35 H 1.08996 * 109.47227 * 300.00430 * 14 13 12 36 36 H 1.09000 * 109.46870 * 60.00053 * 15 14 13 37 37 H 1.09004 * 109.47108 * 300.00159 * 15 14 13 38 38 H 1.09000 * 109.47250 * 60.00015 * 16 15 14 39 39 H 1.09004 * 109.46862 * 300.00038 * 16 15 14 40 40 H 0.96999 * 119.99694 * 359.97438 * 17 16 15 41 41 H 1.07995 * 120.54051 * 359.97115 * 21 20 18 42 42 H 1.08998 * 115.54951 * 154.34808 * 24 23 22 43 43 H 1.09002 * 117.50102 * 0.02562 * 25 24 23 44 44 H 1.09000 * 117.49502 * 145.02066 * 25 24 23 45 45 H 1.09005 * 117.49969 * 214.97488 * 26 24 23 46 46 H 1.08997 * 117.50469 * 359.97438 * 26 24 23 47 47 H 1.07996 * 120.54439 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5607 -2.3707 -0.0022 13 7 6.0504 -3.7556 -0.0014 14 6 7.5188 -3.7949 -0.0019 15 6 7.9902 -5.2504 -0.0003 16 6 9.5195 -5.2913 -0.0002 17 7 9.9709 -6.6850 0.0007 18 6 11.2889 -6.9666 0.0015 19 8 12.1032 -6.0641 0.0010 20 6 11.7443 -8.3731 0.0030 21 6 10.8239 -9.4273 0.0094 22 7 11.2749 -10.6694 0.0051 23 6 12.5694 -10.9213 0.0054 24 6 13.0337 -12.3550 0.0068 25 6 11.9747 -13.4407 -0.1961 26 6 12.6052 -13.2351 1.1827 27 7 13.4705 -9.9585 0.0049 28 6 13.1080 -8.6878 0.0036 29 1 -0.4849 0.8400 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9247 -1.8564 0.8873 32 1 5.9234 -1.8572 -0.8927 33 1 5.6754 -4.2712 0.7808 34 1 7.8960 -3.2903 0.8876 35 1 7.8954 -3.2916 -0.8923 36 1 7.6129 -5.7554 -0.8896 37 1 7.6135 -5.7533 0.8904 38 1 9.8964 -4.7864 0.8893 39 1 9.8965 -4.7883 -0.8907 40 1 9.3211 -7.4052 0.0015 41 1 9.7623 -9.2290 0.0139 42 1 14.0218 -12.5296 -0.4187 43 1 10.9424 -13.1179 -0.3311 44 1 12.2663 -14.3297 -0.7553 45 1 13.3114 -13.9890 1.5307 46 1 11.9880 -12.7771 1.9555 47 1 13.8518 -7.9048 0.0037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167718317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -21.125559 kcal Electronic energy + Delta-G solvation = -27605.935674 eV Core-core repulsion = 23402.632477 eV Total energy + Delta-G solvation = -4203.303196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47782 -40.61775 -40.28450 -38.01315 -37.65041 -36.22015 -35.77420 -34.96745 -33.75841 -33.45729 -32.08120 -28.83179 -27.24018 -26.12917 -25.74070 -24.37932 -23.25214 -22.76378 -22.59338 -21.66311 -21.26644 -20.26018 -19.14711 -18.96256 -17.82267 -17.81568 -17.29382 -16.92243 -16.77575 -16.60187 -16.22152 -15.89666 -15.78756 -15.61668 -15.36867 -15.15269 -14.89925 -14.81627 -14.56564 -14.39647 -14.15459 -13.44104 -13.34476 -13.23435 -12.88816 -12.75486 -12.69722 -12.42229 -12.39853 -12.36470 -12.11643 -11.97403 -11.94572 -11.82725 -11.50789 -11.44367 -11.18422 -10.55119 -10.46796 -10.43588 -10.24362 -10.15993 -9.31337 -8.41047 -6.01998 -0.79448 -0.13649 1.30893 1.36418 1.45154 1.60159 1.89163 1.96311 2.23526 2.46224 2.58563 2.75546 2.82341 3.11600 3.15573 3.28128 3.41686 3.54356 3.74863 3.84142 3.91602 4.01935 4.06282 4.13734 4.18836 4.22497 4.29631 4.45746 4.57650 4.58840 4.60099 4.72564 4.78415 4.80859 4.90965 5.06559 5.13599 5.16419 5.21248 5.30019 5.34131 5.53100 5.69170 5.91188 6.05795 6.32360 6.42091 6.60211 6.82271 6.88507 6.99269 7.40385 7.96864 8.76597 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.001261 C = 0.001209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.892773 B =22197.002006 C =23155.816046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.688 5.688 14 C 0.063 3.937 15 C -0.119 4.119 16 C 0.127 3.873 17 N -0.708 5.708 18 C 0.573 3.427 19 O -0.568 6.568 20 C -0.256 4.256 21 C 0.197 3.803 22 N -0.529 5.529 23 C 0.360 3.640 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.144 4.144 27 N -0.536 5.536 28 C 0.206 3.794 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.345 0.655 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.415 0.585 41 H 0.206 0.794 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.075 -19.810 1.392 36.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.074 0.926 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.320 5.320 14 C -0.066 4.066 15 C -0.157 4.157 16 C 0.003 3.997 17 N -0.360 5.360 18 C 0.359 3.641 19 O -0.448 6.448 20 C -0.263 4.263 21 C 0.029 3.971 22 N -0.242 5.242 23 C 0.096 3.904 24 C -0.148 4.148 25 C -0.180 4.180 26 C -0.183 4.183 27 N -0.249 5.249 28 C 0.039 3.961 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.252 0.748 41 H 0.223 0.777 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.107 0.893 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 31.291 -20.762 0.703 37.559 hybrid contribution -0.704 2.035 0.835 2.310 sum 30.587 -18.727 1.537 35.897 Atomic orbital electron populations 1.69805 1.08169 1.29247 1.50289 1.26107 0.96436 1.02683 0.96010 0.85371 0.79517 0.76739 0.79934 1.18204 1.20088 1.15366 1.19022 0.81584 0.94947 1.50425 0.92646 1.42037 1.05794 1.07682 1.67769 1.21041 0.91111 0.83272 0.81063 1.90542 1.71449 1.32782 1.55155 1.21630 0.89345 0.92060 1.04045 1.60044 1.08456 1.11974 1.51573 1.21909 0.85923 0.96882 1.01928 1.21622 0.92867 0.97067 1.04192 1.21300 0.94259 0.81426 1.02721 1.45771 1.06245 1.10099 1.73906 1.17825 0.82894 0.87300 0.76070 1.90800 1.54336 1.48160 1.51499 1.21670 0.97358 0.95515 1.11794 1.23998 1.01756 0.86083 0.85242 1.68265 1.16917 1.23149 1.15899 1.22922 0.84861 0.96011 0.86598 1.20904 1.01767 0.83633 1.08544 1.23116 0.97811 0.98021 0.99070 1.23080 1.03240 1.00600 0.91342 1.68347 1.39571 1.00799 1.16169 1.23699 0.94479 0.93374 0.84527 0.91154 0.77445 0.90515 0.86806 0.83588 0.93683 0.89951 0.90152 0.90296 0.91199 0.91220 0.74752 0.77721 0.84327 0.87961 0.86022 0.85739 0.89338 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.96 21.67 0.30 -55.70 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.96 38.23 27.74 68.60 1.90 40.14 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 7 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 8 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 9 N -0.59 -27.36 5.09 -306.98 -1.56 -28.92 16 10 C 0.45 19.62 7.82 87.66 0.69 20.31 16 11 O -0.61 -33.36 15.78 -3.09 -0.05 -33.40 16 12 C 0.06 1.75 6.17 85.56 0.53 2.28 16 13 N -0.69 -17.96 6.13 -517.95 -3.17 -21.13 16 14 C 0.06 1.04 5.68 86.30 0.49 1.53 16 15 C -0.12 -1.51 5.59 30.59 0.17 -1.34 16 16 C 0.13 1.59 5.67 86.38 0.49 2.08 16 17 N -0.71 -7.95 5.51 -466.00 -2.57 -10.52 16 18 C 0.57 9.44 7.79 86.78 0.68 10.11 16 19 O -0.57 -13.61 16.45 -3.88 -0.06 -13.67 16 20 C -0.26 -3.68 5.91 -19.91 -0.12 -3.80 16 21 C 0.20 2.23 10.81 85.06 0.92 3.15 16 22 N -0.53 -7.83 9.32 -186.79 -1.74 -9.57 16 23 C 0.36 5.83 7.31 138.71 1.01 6.84 16 24 C -0.13 -1.45 6.23 -11.54 -0.07 -1.53 16 25 C -0.14 -1.16 10.01 30.60 0.31 -0.85 16 26 C -0.14 -1.17 10.23 30.59 0.31 -0.86 16 27 N -0.54 -9.61 10.31 -186.79 -1.93 -11.54 16 28 C 0.21 3.39 10.88 85.06 0.93 4.31 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 31 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.35 9.59 8.43 -89.69 -0.76 8.83 16 34 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.41 2.28 6.61 -92.71 -0.61 1.66 16 41 H 0.21 0.72 6.54 -2.91 -0.02 0.70 16 42 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.05 7.53 -2.39 -0.02 1.03 16 44 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.12 0.52 8.14 -2.38 -0.02 0.51 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.19 2.73 7.74 -2.91 -0.02 2.71 16 Total: -1.00 -83.78 402.78 -2.15 -85.93 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.93 Total: 34.79 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 7.65 Total: 23.61 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -10.67 Total: -137.39 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.11 Total: -47.08 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -83.78 -2.15 -85.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167718317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.806 kcal (2) G-P(sol) polarization free energy of solvation -83.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds