Wall clock time and date at job start Wed Apr 1 2020 04:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99497 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21573 * 120.00276 * 359.72080 * 17 16 15 19 19 C 1.47680 * 119.99777 * 179.72383 * 17 16 15 20 20 C 1.39915 * 120.38809 * 0.02562 * 19 17 16 21 21 N 1.31441 * 121.13654 * 179.97438 * 20 19 17 22 22 C 1.32477 * 121.81329 * 359.97438 * 21 20 19 23 23 N 1.37876 * 133.44909 * 180.02562 * 22 21 20 24 24 H 0.96998 * 126.24921 * 0.02600 * 23 22 21 25 25 C 1.36511 * 107.49828 * 179.97438 * 23 22 21 26 26 O 1.35267 * 125.02538 * 179.97438 * 25 23 22 27 27 N 1.30726 * 109.95475 * 0.02562 * 25 23 22 28 28 C 1.35896 * 109.39558 * 359.97438 * 27 25 23 29 29 C 1.39415 * 133.62984 * 180.30733 * 28 27 25 30 30 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 33 33 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 34 34 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 35 35 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 36 36 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 37 37 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 38 38 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 39 39 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 40 40 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 41 41 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 42 42 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 43 43 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 44 44 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 45 45 H 1.08003 * 119.43308 * 359.95017 * 20 19 17 46 46 H 0.96698 * 113.99638 * 90.00518 * 26 25 23 47 47 H 1.08000 * 120.97426 * 359.91873 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5514 -12.2316 -0.0071 19 6 1.4028 -13.5104 -0.0138 20 6 2.8019 -13.5198 -0.0132 21 7 3.4740 -14.6494 -0.0187 22 6 2.8636 -15.8252 -0.0245 23 7 3.3151 -17.1279 -0.0304 24 1 4.2420 -17.4137 -0.0310 25 6 2.2193 -17.9421 -0.0342 26 8 2.2568 -19.2942 -0.0408 27 7 1.1284 -17.2218 -0.0315 28 6 1.4580 -15.9035 -0.0253 29 6 0.7123 -14.7255 -0.0150 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6848 -3.7144 -0.8894 34 1 0.4369 -4.7622 -0.8885 35 1 0.4377 -4.7618 0.8914 36 1 2.4563 -6.2024 0.8902 37 1 2.4550 -6.2023 -0.8899 38 1 0.2079 -7.2497 -0.8892 39 1 0.2084 -7.2502 0.8908 40 1 2.2265 -8.6904 0.8905 41 1 2.2265 -8.6903 -0.8895 42 1 -0.0207 -9.7376 -0.8904 43 1 -0.0213 -9.7381 0.8896 44 1 2.3082 -11.0642 -0.0011 45 1 3.3390 -12.5828 -0.0085 46 1 2.2678 -19.6916 0.8406 47 1 -0.3674 -14.7512 -0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178897423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:19 Heat of formation + Delta-G solvation = 6.991361 kcal Electronic energy + Delta-G solvation = -27367.406821 eV Core-core repulsion = 23165.322866 eV Total energy + Delta-G solvation = -4202.083955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12671 -40.50231 -39.11814 -37.58932 -36.86017 -35.48478 -34.43587 -34.01792 -32.29145 -31.80332 -30.46503 -29.62303 -27.06011 -25.03919 -24.39000 -23.79726 -22.61306 -22.27781 -21.50765 -20.80303 -20.65718 -20.03058 -18.93330 -18.61731 -17.43705 -16.97830 -16.93332 -16.45869 -16.27276 -15.84682 -15.47232 -15.12715 -14.69165 -14.51943 -14.30267 -14.19732 -13.75830 -13.47127 -13.38830 -13.13575 -13.10889 -12.84143 -12.72122 -12.35868 -11.95566 -11.72718 -11.70786 -11.36843 -11.20086 -10.92278 -10.74219 -10.73939 -10.61492 -10.35658 -10.25139 -9.95428 -9.90044 -9.70566 -9.63313 -9.43811 -9.21544 -8.83768 -6.87488 -5.73051 -3.01371 -0.03974 0.09325 1.32750 1.79659 2.35518 2.53097 2.88637 3.21019 3.45408 3.49314 3.50662 3.53235 3.89700 4.09040 4.11806 4.19061 4.48361 4.58884 4.66118 4.74025 4.92481 4.95014 5.22856 5.27063 5.32858 5.37721 5.39364 5.56409 5.63893 5.63933 5.69174 5.72512 5.78683 5.93235 5.96259 6.03203 6.14060 6.34782 6.35508 6.42874 6.49973 6.64600 6.80099 6.93280 6.97262 7.00322 7.04617 7.73563 7.73722 8.46376 9.57119 10.16908 10.51298 11.50216 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.046817 B = 0.001084 C = 0.001061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.935449 B =25827.256750 C =26380.984102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.117 3.883 16 N -0.723 5.723 17 C 0.568 3.432 18 O -0.530 6.530 19 C -0.195 4.195 20 C 0.177 3.823 21 N -0.480 5.480 22 C 0.269 3.731 23 N -0.586 5.586 24 H 0.431 0.569 25 C 0.469 3.531 26 O -0.435 6.435 27 N -0.467 5.467 28 C 0.006 3.994 29 C 0.050 3.950 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.400 0.600 45 H 0.173 0.827 46 H 0.416 0.584 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -41.648 1.734 42.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.006 4.006 16 N -0.375 5.375 17 C 0.354 3.646 18 O -0.406 6.406 19 C -0.204 4.204 20 C 0.008 3.992 21 N -0.192 5.192 22 C 0.033 3.967 23 N -0.213 5.213 24 H 0.272 0.728 25 C 0.164 3.836 26 O -0.237 6.237 27 N -0.198 5.198 28 C -0.114 4.114 29 C 0.023 3.977 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.235 0.765 45 H 0.190 0.810 46 H 0.276 0.724 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.140 -41.957 1.138 42.576 hybrid contribution 1.189 0.766 0.465 1.489 sum 8.329 -41.192 1.603 42.056 Atomic orbital electron populations 1.69669 1.05130 1.25489 1.58057 1.24745 0.95522 0.97687 1.03179 0.86119 0.78777 0.84150 0.77189 1.20559 1.21866 1.21873 1.19305 0.91075 0.84290 1.42303 0.91173 1.42406 1.05920 1.00177 1.89445 1.20656 0.93660 0.85722 0.97518 1.21731 0.98893 0.93851 1.02017 1.21501 0.97869 0.93865 1.01906 1.21518 0.98440 0.92790 1.02714 1.21845 0.98262 0.93986 1.02882 1.21523 0.94957 0.81078 1.03010 1.45923 1.10413 1.05839 1.75364 1.17765 0.87078 0.83100 0.76706 1.90831 1.13160 1.87347 1.49311 1.20668 0.94898 0.94287 1.10507 1.22751 0.89929 0.94814 0.91742 1.66368 1.40585 0.95568 1.16711 1.18714 0.90889 0.85702 1.01431 1.43069 1.10951 1.04071 1.63208 0.72829 1.20198 0.81094 0.84065 0.98276 1.84872 1.94232 1.09529 1.35078 1.70782 1.25084 1.01378 1.22529 1.19340 0.91617 0.91997 1.08450 1.20879 1.01515 0.87223 0.88095 0.93587 0.78334 0.96602 0.96593 0.92082 0.92076 0.92087 0.92087 0.91561 0.91569 0.91145 0.91153 0.90960 0.90947 0.76490 0.81037 0.72437 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.74 -19.30 5.60 -59.92 -0.34 -19.64 16 10 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 11 C -0.13 -2.02 5.33 -26.73 -0.14 -2.17 16 12 C -0.11 -1.32 5.21 -26.73 -0.14 -1.46 16 13 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 14 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 15 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 16 N -0.72 -4.62 5.51 -61.30 -0.34 -4.96 16 17 C 0.57 5.01 7.77 -12.40 -0.10 4.91 16 18 O -0.53 -6.75 16.40 5.30 0.09 -6.66 16 19 C -0.20 -1.44 5.89 -104.84 -0.62 -2.05 16 20 C 0.18 1.01 10.69 -17.09 -0.18 0.83 16 21 N -0.48 -3.49 10.36 -11.91 -0.12 -3.61 16 22 C 0.27 2.03 8.45 -155.42 -1.31 0.72 16 23 N -0.59 -2.80 6.23 -13.35 -0.08 -2.89 16 24 H 0.43 0.75 8.96 -40.82 -0.37 0.38 16 25 C 0.47 2.68 9.39 -88.83 -0.83 1.84 16 26 O -0.44 -1.21 13.63 -17.49 -0.24 -1.44 16 27 N -0.47 -4.08 11.32 -12.21 -0.14 -4.22 16 28 C 0.01 0.05 7.22 -84.67 -0.61 -0.56 16 29 C 0.05 0.42 9.75 -38.57 -0.38 0.05 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.40 1.33 6.51 -40.82 -0.27 1.07 16 45 H 0.17 0.38 6.39 -52.48 -0.34 0.04 16 46 H 0.42 -1.16 9.06 45.56 0.41 -0.74 16 47 H 0.16 1.33 7.72 -52.49 -0.41 0.92 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -38.64 400.81 -10.21 -48.85 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.89 Total: 2.75 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.89 Total: -3.78 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.29 Total: -63.42 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.15 Total: -8.11 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.64 -10.21 -48.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178897423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.839 kcal (2) G-P(sol) polarization free energy of solvation -38.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds