Wall clock time and date at job start Wed Apr 1 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99497 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21573 * 120.00276 * 359.72080 * 17 16 15 19 19 C 1.47680 * 119.99777 * 179.72383 * 17 16 15 20 20 C 1.39915 * 120.38809 * 0.02562 * 19 17 16 21 21 N 1.31441 * 121.13654 * 179.97438 * 20 19 17 22 22 C 1.32477 * 121.81329 * 359.97438 * 21 20 19 23 23 N 1.37876 * 133.44909 * 180.02562 * 22 21 20 24 24 H 0.96998 * 126.24921 * 0.02600 * 23 22 21 25 25 C 1.36511 * 107.49828 * 179.97438 * 23 22 21 26 26 O 1.35267 * 125.02538 * 179.97438 * 25 23 22 27 27 N 1.30726 * 109.95475 * 0.02562 * 25 23 22 28 28 C 1.35896 * 109.39558 * 359.97438 * 27 25 23 29 29 C 1.39415 * 133.62984 * 180.30733 * 28 27 25 30 30 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 33 33 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 34 34 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 35 35 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 36 36 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 37 37 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 38 38 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 39 39 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 40 40 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 41 41 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 42 42 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 43 43 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 44 44 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 45 45 H 1.08003 * 119.43308 * 359.95017 * 20 19 17 46 46 H 0.96698 * 113.99638 * 90.00518 * 26 25 23 47 47 H 1.08000 * 120.97426 * 359.91873 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5514 -12.2316 -0.0071 19 6 1.4028 -13.5104 -0.0138 20 6 2.8019 -13.5198 -0.0132 21 7 3.4740 -14.6494 -0.0187 22 6 2.8636 -15.8252 -0.0245 23 7 3.3151 -17.1279 -0.0304 24 1 4.2420 -17.4137 -0.0310 25 6 2.2193 -17.9421 -0.0342 26 8 2.2568 -19.2942 -0.0408 27 7 1.1284 -17.2218 -0.0315 28 6 1.4580 -15.9035 -0.0253 29 6 0.7123 -14.7255 -0.0150 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6848 -3.7144 -0.8894 34 1 0.4369 -4.7622 -0.8885 35 1 0.4377 -4.7618 0.8914 36 1 2.4563 -6.2024 0.8902 37 1 2.4550 -6.2023 -0.8899 38 1 0.2079 -7.2497 -0.8892 39 1 0.2084 -7.2502 0.8908 40 1 2.2265 -8.6904 0.8905 41 1 2.2265 -8.6903 -0.8895 42 1 -0.0207 -9.7376 -0.8904 43 1 -0.0213 -9.7381 0.8896 44 1 2.3082 -11.0642 -0.0011 45 1 3.3390 -12.5828 -0.0085 46 1 2.2678 -19.6916 0.8406 47 1 -0.3674 -14.7512 -0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178897423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:18 Heat of formation + Delta-G solvation = -25.362009 kcal Electronic energy + Delta-G solvation = -27368.809768 eV Core-core repulsion = 23165.322866 eV Total energy + Delta-G solvation = -4203.486903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60486 -41.12288 -39.59759 -37.98286 -37.83367 -36.75726 -35.33711 -34.94440 -33.56802 -32.64260 -31.62915 -30.49592 -28.25853 -26.10740 -25.06559 -24.86046 -23.54272 -23.06209 -22.22856 -22.02113 -21.52518 -20.41410 -19.41265 -19.18172 -19.04775 -17.87171 -17.50602 -17.05005 -16.90718 -16.67231 -16.43732 -16.28091 -15.67764 -15.37739 -15.28547 -15.22794 -15.02956 -14.74528 -14.27170 -14.06984 -13.84848 -13.45464 -13.43306 -13.36910 -13.02136 -12.93691 -12.64216 -12.45487 -12.33818 -12.19660 -12.09461 -11.98241 -11.75639 -11.75414 -11.51785 -11.28137 -11.20232 -10.92976 -10.48023 -10.31376 -10.01778 -9.71362 -8.99886 -7.95351 -5.24698 -0.57132 -0.41047 0.93808 1.34560 1.47850 1.49159 1.59459 1.71773 1.95750 2.46755 2.56775 2.64697 3.06161 3.38520 3.42891 3.56964 3.67859 3.70891 3.80186 4.02547 4.09104 4.12062 4.30993 4.34247 4.39309 4.47815 4.65656 4.70452 4.75598 4.80605 4.84836 4.92633 5.03500 5.03984 5.12347 5.16111 5.22278 5.34904 5.36865 5.44908 5.50793 5.59085 5.62274 5.64275 6.27743 6.33013 6.39968 6.47895 6.61413 7.13808 7.33081 8.10695 8.33133 9.28855 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.046817 B = 0.001084 C = 0.001061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.935449 B =25827.256750 C =26380.984102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.119 3.881 16 N -0.706 5.706 17 C 0.569 3.431 18 O -0.577 6.577 19 C -0.195 4.195 20 C 0.186 3.814 21 N -0.486 5.486 22 C 0.262 3.738 23 N -0.571 5.571 24 H 0.446 0.554 25 C 0.486 3.514 26 O -0.434 6.434 27 N -0.509 5.509 28 C -0.013 4.013 29 C 0.036 3.964 30 H 0.252 0.748 31 H 0.372 0.628 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.418 0.582 45 H 0.210 0.790 46 H 0.441 0.559 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 -42.645 1.848 44.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.156 4.156 12 C -0.142 4.142 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.358 5.358 17 C 0.356 3.644 18 O -0.457 6.457 19 C -0.203 4.203 20 C 0.017 3.983 21 N -0.199 5.199 22 C 0.025 3.975 23 N -0.200 5.200 24 H 0.289 0.711 25 C 0.180 3.820 26 O -0.240 6.240 27 N -0.241 5.241 28 C -0.132 4.132 29 C 0.008 3.992 30 H 0.061 0.939 31 H 0.204 0.796 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.256 0.744 45 H 0.227 0.773 46 H 0.305 0.695 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.114 -43.012 1.273 44.203 hybrid contribution 0.321 0.950 0.437 1.094 sum 10.435 -42.062 1.710 43.371 Atomic orbital electron populations 1.69828 1.06754 1.26099 1.59607 1.25619 0.96429 1.01275 1.03601 0.85039 0.78270 0.79506 0.76752 1.18854 1.21900 1.21900 1.19733 0.91594 0.85517 1.41208 0.90576 1.42689 1.05705 1.01605 1.89440 1.20889 0.94455 0.85047 0.97467 1.21652 0.98094 0.94513 1.01328 1.21423 0.97957 0.91992 1.02796 1.21455 0.98087 0.93294 1.02432 1.21715 0.97774 0.91795 1.04381 1.21422 0.95178 0.81772 1.02017 1.45751 1.11285 1.04804 1.73998 1.17968 0.86547 0.83981 0.75946 1.90810 1.15230 1.87975 1.51696 1.20554 0.95592 0.93094 1.11105 1.23288 0.89186 0.95797 0.89987 1.66504 1.40495 0.95701 1.17161 1.18901 0.90622 0.86615 1.01371 1.42995 1.11605 1.03019 1.62369 0.71052 1.20220 0.80750 0.84884 0.96187 1.84850 1.94024 1.07808 1.37311 1.70732 1.26818 1.01779 1.24796 1.19456 0.92431 0.92101 1.09251 1.20901 1.01249 0.88046 0.88984 0.93947 0.79606 0.96256 0.96268 0.92824 0.92792 0.91151 0.91191 0.91992 0.91956 0.89592 0.89656 0.92123 0.92041 0.74378 0.77324 0.69496 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -39.65 5.60 -343.47 -1.92 -41.57 16 10 C 0.15 5.94 6.26 86.38 0.54 6.48 16 11 C -0.12 -3.66 5.33 30.59 0.16 -3.50 16 12 C -0.10 -2.18 5.21 30.60 0.16 -2.02 16 13 C -0.11 -1.91 5.21 30.59 0.16 -1.75 16 14 C -0.12 -1.27 5.33 30.59 0.16 -1.11 16 15 C 0.12 1.62 5.67 86.38 0.49 2.12 16 16 N -0.71 -7.72 5.51 -466.12 -2.57 -10.29 16 17 C 0.57 9.84 7.77 86.74 0.67 10.51 16 18 O -0.58 -15.29 16.40 -3.95 -0.06 -15.35 16 19 C -0.20 -2.79 5.89 -20.01 -0.12 -2.90 16 20 C 0.19 1.76 10.69 85.16 0.91 2.67 16 21 N -0.49 -6.20 10.36 -191.61 -1.99 -8.18 16 22 C 0.26 3.70 8.45 133.83 1.13 4.83 16 23 N -0.57 -4.67 6.23 -306.99 -1.91 -6.59 16 24 H 0.45 0.68 8.96 -92.71 -0.83 -0.15 16 25 C 0.49 5.07 9.39 179.72 1.69 6.76 16 26 O -0.43 -1.68 13.63 -85.51 -1.17 -2.85 16 27 N -0.51 -9.01 11.32 -306.40 -3.47 -12.47 16 28 C -0.01 -0.23 7.22 39.42 0.28 0.06 16 29 C 0.04 0.64 9.75 22.92 0.22 0.86 16 30 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.42 1.42 6.51 -92.71 -0.60 0.81 16 45 H 0.21 0.14 6.39 -2.91 -0.02 0.12 16 46 H 0.44 -3.34 9.06 -74.06 -0.67 -4.01 16 47 H 0.15 2.82 7.72 -2.91 -0.02 2.80 16 Total: -1.00 -84.86 400.81 -4.77 -89.63 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -1.76 Total: 14.03 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 7.78 Total: 5.51 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -11.58 Total: -139.55 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.23 Total: -18.20 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -84.86 -4.77 -89.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178897423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.269 kcal (2) G-P(sol) polarization free energy of solvation -84.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds