Wall clock time and date at job start Wed Apr 1 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48497 * 109.46941 * 269.99764 * 3 2 1 5 5 H 1.48495 * 109.47174 * 30.00269 * 3 2 1 6 6 H 1.48505 * 109.46888 * 149.99966 * 3 2 1 7 7 C 1.38946 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99772 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99493 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00581 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99635 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00083 * 180.02562 * 13 12 10 15 15 H 1.09006 * 110.88385 * 328.88455 * 14 13 12 16 16 C 1.55150 * 111.00921 * 205.00331 * 14 13 12 17 17 C 1.54317 * 102.94509 * 206.38708 * 16 14 13 18 18 N 1.47016 * 107.27257 * 22.18903 * 17 16 14 19 19 C 1.34784 * 125.65078 * 181.02490 * 18 17 16 20 20 O 1.21605 * 119.99806 * 179.75217 * 19 18 17 21 21 C 1.47427 * 119.99755 * 0.02562 * 19 18 17 22 22 C 1.41200 * 126.43848 * 359.69177 * 21 19 18 23 23 N 1.30288 * 108.02816 * 179.89475 * 22 21 19 24 24 N 1.40519 * 109.01664 * 0.51262 * 23 22 21 25 25 C 1.34012 * 108.16576 * 359.51847 * 24 23 22 26 26 C 1.51390 * 110.34113 * 180.27079 * 25 24 23 27 27 C 1.54571 * 104.14584 * 16.45389 * 26 25 24 28 28 C 1.47249 * 140.80866 * 179.41674 * 24 23 22 29 29 C 1.47422 * 108.70287 * 1.29125 * 18 17 16 30 30 H 0.97004 * 120.00033 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00355 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47079 * 60.00348 * 12 10 9 33 33 H 1.08997 * 109.46892 * 300.00309 * 12 10 9 34 34 H 1.00901 * 111.00199 * 303.95486 * 13 12 10 35 35 H 1.09003 * 110.72057 * 88.01614 * 16 14 13 36 36 H 1.09007 * 110.71622 * 324.75061 * 16 14 13 37 37 H 1.09000 * 109.88145 * 262.77116 * 17 16 14 38 38 H 1.09009 * 109.88623 * 141.60958 * 17 16 14 39 39 H 1.07996 * 125.98948 * 0.08233 * 22 21 19 40 40 H 1.08997 * 110.50021 * 135.11902 * 26 25 24 41 41 H 1.08997 * 110.49455 * 257.79048 * 26 25 24 42 42 H 1.08995 * 110.99182 * 93.07330 * 27 26 25 43 43 H 1.08995 * 110.99193 * 216.85909 * 27 26 25 44 44 H 1.08997 * 110.23206 * 43.95355 * 28 24 23 45 45 H 1.09000 * 110.30329 * 282.03018 * 28 24 23 46 46 H 1.08996 * 110.37059 * 94.48400 * 29 18 17 47 47 H 1.09001 * 110.36609 * 216.80695 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0011 13 7 6.0504 -3.7555 0.0017 14 6 7.5188 -3.7947 0.0023 15 1 7.9308 -2.9336 -0.5241 16 6 8.0401 -5.1219 -0.6092 17 6 9.4173 -5.2958 0.0649 18 7 9.3979 -4.5089 1.3066 19 6 10.4223 -4.3843 2.1737 20 8 10.2947 -3.7006 3.1712 21 6 11.6993 -5.0721 1.9097 22 6 11.9949 -5.8954 0.8014 23 7 13.2225 -6.3138 0.9259 24 7 13.7649 -5.7946 2.1137 25 6 12.8301 -5.0370 2.7037 26 6 13.3668 -4.4454 3.9897 27 6 14.8986 -4.6173 3.8742 28 6 15.0058 -5.8150 2.9061 29 6 8.0705 -3.8839 1.4495 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3632 0.0014 32 1 5.9241 -1.8567 0.8911 33 1 5.9240 -1.8566 -0.8889 34 1 5.6749 -4.2714 0.7833 35 1 8.1483 -5.0322 -1.6902 36 1 7.3786 -5.9500 -0.3543 37 1 10.2024 -4.9273 -0.5953 38 1 9.5872 -6.3477 0.2952 39 1 11.3225 -6.1339 -0.0094 40 1 13.1057 -3.3897 4.0624 41 1 12.9850 -4.9941 4.8507 42 1 15.3602 -3.7273 3.4468 43 1 15.3387 -4.8564 4.8423 44 1 15.8713 -5.6965 2.2543 45 1 15.0815 -6.7469 3.4664 46 1 7.4227 -4.5059 2.0672 47 1 8.1649 -2.8874 1.8811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183094900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:22 Heat of formation + Delta-G solvation = 43.309930 kcal Electronic energy + Delta-G solvation = -29472.275070 eV Core-core repulsion = 25271.766006 eV Total energy + Delta-G solvation = -4200.509064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29442 -40.04516 -38.51647 -37.58077 -36.85827 -34.80448 -33.84007 -31.73238 -31.60017 -30.80070 -29.97349 -29.11823 -27.64311 -26.11884 -24.34371 -23.49047 -22.68082 -21.68862 -21.27760 -20.70640 -19.41764 -19.18478 -18.38599 -17.62298 -17.07676 -16.53134 -16.02757 -15.72850 -15.52679 -15.13143 -14.83716 -14.77543 -14.49137 -14.27497 -14.15158 -14.03403 -13.75005 -13.62118 -13.36992 -12.98499 -12.92083 -12.70889 -12.59798 -12.41097 -12.21584 -12.15648 -11.92435 -11.83122 -11.56257 -11.39388 -11.30504 -11.14413 -10.93078 -10.58284 -10.03977 -9.96621 -9.80909 -9.56585 -9.08902 -8.77645 -8.60094 -8.21675 -8.16039 -6.30221 -3.81705 1.14029 1.69901 1.80919 2.76649 3.04105 3.08245 3.16473 3.21465 3.44924 3.74085 3.87988 3.95521 4.06712 4.11292 4.14629 4.30819 4.43963 4.52445 4.70444 4.77157 4.79477 4.81437 4.89725 4.92107 4.99478 5.08455 5.16628 5.22694 5.23878 5.28606 5.30213 5.40862 5.55567 5.61818 5.67816 5.78647 5.87755 5.90115 5.95126 6.00277 6.14300 6.20100 7.03424 7.19388 7.35053 7.48559 7.58702 8.07441 8.15108 8.60235 8.95675 9.43168 9.82889 10.82810 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.001788 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.456899 B =15655.237920 C =16432.578094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.045 3.955 13 N -0.652 5.652 14 C 0.076 3.924 15 H 0.094 0.906 16 C -0.121 4.121 17 C 0.092 3.908 18 N -0.612 5.612 19 C 0.609 3.391 20 O -0.549 6.549 21 C -0.277 4.277 22 C 0.073 3.927 23 N -0.277 5.277 24 N -0.383 5.383 25 C 0.139 3.861 26 C -0.071 4.071 27 C -0.134 4.134 28 C 0.125 3.875 29 C 0.079 3.921 30 H 0.273 0.727 31 H 0.371 0.629 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.355 0.645 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.206 0.794 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.705 -9.153 4.894 35.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.088 4.088 13 N -0.283 5.283 14 C -0.035 4.035 15 H 0.112 0.888 16 C -0.160 4.160 17 C -0.031 4.031 18 N -0.346 5.346 19 C 0.400 3.600 20 O -0.427 6.427 21 C -0.292 4.292 22 C -0.114 4.114 23 N -0.095 5.095 24 N -0.163 5.163 25 C 0.005 3.995 26 C -0.110 4.110 27 C -0.172 4.172 28 C 0.004 3.996 29 C -0.046 4.046 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.222 0.778 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 34.145 -10.292 4.187 35.907 hybrid contribution 0.092 2.053 1.110 2.336 sum 34.237 -8.239 5.297 35.611 Atomic orbital electron populations 1.69623 1.05646 1.27497 1.49319 1.25040 0.95496 0.97986 0.97625 0.86671 0.79789 0.84032 0.78901 1.19592 1.20197 1.19485 1.19433 0.79234 0.96641 1.48087 0.86256 1.42204 1.07547 1.06171 1.67001 1.19676 0.88126 0.84590 0.84085 1.90568 1.69419 1.30909 1.53767 1.21797 0.95186 0.90251 1.01524 1.60151 1.04116 1.12870 1.51194 1.22863 0.88586 0.98707 0.93393 0.88803 1.22683 0.94102 0.98434 1.00742 1.22437 0.99103 0.95825 0.85724 1.48061 1.12907 1.50450 1.23167 1.16873 0.81511 0.79958 0.81703 1.90771 1.82767 1.41467 1.27712 1.19351 0.95758 1.13648 1.00437 1.24806 0.93340 0.94926 0.98348 1.77251 1.10792 1.22261 0.99171 1.50158 1.12713 1.36649 1.16738 1.22487 0.89927 0.92558 0.94504 1.21026 0.93520 1.03712 0.92722 1.22883 0.96205 0.97819 1.00298 1.22492 0.83900 1.00812 0.92362 1.23153 0.83483 0.98994 0.98943 0.91615 0.79663 0.93438 0.89245 0.82437 0.89303 0.89536 0.90867 0.90855 0.77764 0.87566 0.87846 0.89125 0.87542 0.88502 0.88778 0.91015 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.40 27.74 -169.99 -4.72 14.69 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.04 7.82 -10.98 -0.09 9.95 16 11 O -0.56 -14.95 15.78 5.55 0.09 -14.87 16 12 C 0.05 0.72 6.03 -4.97 -0.03 0.69 16 13 N -0.65 -9.36 6.04 -105.60 -0.64 -10.00 16 14 C 0.08 0.83 3.39 -65.45 -0.22 0.60 16 15 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 16 C -0.12 -1.04 6.64 -24.90 -0.17 -1.21 16 17 C 0.09 0.72 4.98 -3.07 -0.02 0.70 16 18 N -0.61 -6.76 3.32 -171.65 -0.57 -7.33 16 19 C 0.61 7.94 7.85 -12.52 -0.10 7.84 16 20 O -0.55 -8.84 17.15 5.27 0.09 -8.75 16 21 C -0.28 -3.10 6.09 -105.04 -0.64 -3.74 16 22 C 0.07 0.70 10.44 -17.08 -0.18 0.52 16 23 N -0.28 -2.96 12.64 30.81 0.39 -2.57 16 24 N -0.38 -3.45 4.81 -55.13 -0.26 -3.71 16 25 C 0.14 1.36 7.30 -81.31 -0.59 0.76 16 26 C -0.07 -0.43 6.86 -26.72 -0.18 -0.62 16 27 C -0.13 -0.36 7.18 -25.18 -0.18 -0.54 16 28 C 0.12 0.53 7.78 -2.91 -0.02 0.51 16 29 C 0.08 0.91 6.51 -2.41 -0.02 0.89 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 34 H 0.35 5.35 7.89 -39.29 -0.31 5.04 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.46 6.85 -51.93 -0.36 0.11 16 38 H 0.07 0.48 6.98 -51.92 -0.36 0.12 16 39 H 0.21 1.36 4.48 -52.49 -0.23 1.12 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16 47 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -37.89 384.43 -8.29 -46.18 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.51 Total: 10.94 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -2.68 Total: 8.63 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.37 Total: -62.62 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.18 Total: -23.62 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.72 Total: 14.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.89 -8.29 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183094900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.494 kcal (2) G-P(sol) polarization free energy of solvation -37.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds