Wall clock time and date at job start Wed Apr 1 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48497 * 109.46941 * 269.99764 * 3 2 1 5 5 H 1.48495 * 109.47174 * 30.00269 * 3 2 1 6 6 H 1.48505 * 109.46888 * 149.99966 * 3 2 1 7 7 C 1.38946 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99772 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99493 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00581 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99635 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00083 * 180.02562 * 13 12 10 15 15 H 1.09006 * 110.88385 * 328.88455 * 14 13 12 16 16 C 1.55150 * 111.00921 * 205.00331 * 14 13 12 17 17 C 1.54317 * 102.94509 * 206.38708 * 16 14 13 18 18 N 1.47016 * 107.27257 * 22.18903 * 17 16 14 19 19 C 1.34784 * 125.65078 * 181.02490 * 18 17 16 20 20 O 1.21605 * 119.99806 * 179.75217 * 19 18 17 21 21 C 1.47427 * 119.99755 * 0.02562 * 19 18 17 22 22 C 1.41200 * 126.43848 * 359.69177 * 21 19 18 23 23 N 1.30288 * 108.02816 * 179.89475 * 22 21 19 24 24 N 1.40519 * 109.01664 * 0.51262 * 23 22 21 25 25 C 1.34012 * 108.16576 * 359.51847 * 24 23 22 26 26 C 1.51390 * 110.34113 * 180.27079 * 25 24 23 27 27 C 1.54571 * 104.14584 * 16.45389 * 26 25 24 28 28 C 1.47249 * 140.80866 * 179.41674 * 24 23 22 29 29 C 1.47422 * 108.70287 * 1.29125 * 18 17 16 30 30 H 0.97004 * 120.00033 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00355 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47079 * 60.00348 * 12 10 9 33 33 H 1.08997 * 109.46892 * 300.00309 * 12 10 9 34 34 H 1.00901 * 111.00199 * 303.95486 * 13 12 10 35 35 H 1.09003 * 110.72057 * 88.01614 * 16 14 13 36 36 H 1.09007 * 110.71622 * 324.75061 * 16 14 13 37 37 H 1.09000 * 109.88145 * 262.77116 * 17 16 14 38 38 H 1.09009 * 109.88623 * 141.60958 * 17 16 14 39 39 H 1.07996 * 125.98948 * 0.08233 * 22 21 19 40 40 H 1.08997 * 110.50021 * 135.11902 * 26 25 24 41 41 H 1.08997 * 110.49455 * 257.79048 * 26 25 24 42 42 H 1.08995 * 110.99182 * 93.07330 * 27 26 25 43 43 H 1.08995 * 110.99193 * 216.85909 * 27 26 25 44 44 H 1.08997 * 110.23206 * 43.95355 * 28 24 23 45 45 H 1.09000 * 110.30329 * 282.03018 * 28 24 23 46 46 H 1.08996 * 110.37059 * 94.48400 * 29 18 17 47 47 H 1.09001 * 110.36609 * 216.80695 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0011 13 7 6.0504 -3.7555 0.0017 14 6 7.5188 -3.7947 0.0023 15 1 7.9308 -2.9336 -0.5241 16 6 8.0401 -5.1219 -0.6092 17 6 9.4173 -5.2958 0.0649 18 7 9.3979 -4.5089 1.3066 19 6 10.4223 -4.3843 2.1737 20 8 10.2947 -3.7006 3.1712 21 6 11.6993 -5.0721 1.9097 22 6 11.9949 -5.8954 0.8014 23 7 13.2225 -6.3138 0.9259 24 7 13.7649 -5.7946 2.1137 25 6 12.8301 -5.0370 2.7037 26 6 13.3668 -4.4454 3.9897 27 6 14.8986 -4.6173 3.8742 28 6 15.0058 -5.8150 2.9061 29 6 8.0705 -3.8839 1.4495 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3632 0.0014 32 1 5.9241 -1.8567 0.8911 33 1 5.9240 -1.8566 -0.8889 34 1 5.6749 -4.2714 0.7833 35 1 8.1483 -5.0322 -1.6902 36 1 7.3786 -5.9500 -0.3543 37 1 10.2024 -4.9273 -0.5953 38 1 9.5872 -6.3477 0.2952 39 1 11.3225 -6.1339 -0.0094 40 1 13.1057 -3.3897 4.0624 41 1 12.9850 -4.9941 4.8507 42 1 15.3602 -3.7273 3.4468 43 1 15.3387 -4.8564 4.8423 44 1 15.8713 -5.6965 2.2543 45 1 15.0815 -6.7469 3.4664 46 1 7.4227 -4.5059 2.0672 47 1 8.1649 -2.8874 1.8811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183094900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:21 Heat of formation + Delta-G solvation = 12.318201 kcal Electronic energy + Delta-G solvation = -29473.618972 eV Core-core repulsion = 25271.766006 eV Total energy + Delta-G solvation = -4201.852966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.93461 -40.94468 -40.22143 -38.64907 -37.37006 -36.20842 -35.55802 -33.73806 -32.42380 -31.62352 -30.52864 -29.96049 -28.56439 -27.40797 -25.64999 -24.65846 -23.13248 -22.39676 -22.02114 -21.48046 -21.26364 -20.30790 -19.91759 -18.43586 -17.73777 -17.60199 -17.25818 -16.95081 -16.65489 -16.48095 -15.92792 -15.74713 -15.38510 -15.24233 -15.05203 -14.78844 -14.71570 -14.57590 -14.41692 -14.23406 -14.06959 -13.90545 -13.76655 -13.46305 -13.24252 -13.08678 -12.92493 -12.54179 -12.46511 -12.40432 -12.23673 -12.13976 -12.01172 -11.96938 -11.68250 -11.50430 -11.00384 -10.42809 -10.40061 -10.23799 -9.91367 -9.57999 -9.34820 -8.40467 -6.01246 0.42143 1.06654 1.19541 1.31336 1.36340 1.45058 1.91585 1.97234 2.23687 2.34455 2.72751 3.02047 3.15871 3.27062 3.44497 3.57311 3.65478 3.72981 3.87042 3.92697 4.04825 4.10851 4.17336 4.22056 4.27038 4.37940 4.43452 4.45442 4.51455 4.54220 4.62104 4.68746 4.78133 4.80066 4.82479 4.95979 5.04411 5.15211 5.21213 5.27137 5.37587 5.53871 5.62630 5.91287 6.03745 6.30620 6.46665 6.55294 6.60259 6.88928 7.14782 7.40653 7.96977 8.77075 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.001788 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.456899 B =15655.237920 C =16432.578094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.329 4.329 8 H 0.056 0.944 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.613 6.613 12 C 0.059 3.941 13 N -0.664 5.664 14 C 0.083 3.917 15 H 0.109 0.891 16 C -0.114 4.114 17 C 0.092 3.908 18 N -0.611 5.611 19 C 0.604 3.396 20 O -0.592 6.592 21 C -0.308 4.308 22 C 0.080 3.920 23 N -0.305 5.305 24 N -0.384 5.384 25 C 0.130 3.870 26 C -0.076 4.076 27 C -0.116 4.116 28 C 0.112 3.888 29 C 0.080 3.920 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.347 0.653 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.229 0.771 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.952 -8.027 4.524 39.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.156 1.156 7 C -0.458 4.458 8 H 0.074 0.926 9 N -0.233 5.233 10 C 0.237 3.763 11 O -0.497 6.497 12 C -0.074 4.074 13 N -0.295 5.295 14 C -0.028 4.028 15 H 0.127 0.873 16 C -0.152 4.152 17 C -0.030 4.030 18 N -0.344 5.344 19 C 0.396 3.604 20 O -0.474 6.474 21 C -0.322 4.322 22 C -0.107 4.107 23 N -0.124 5.124 24 N -0.163 5.163 25 C -0.006 4.006 26 C -0.114 4.114 27 C -0.154 4.154 28 C -0.006 4.006 29 C -0.045 4.045 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.244 0.756 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 38.447 -9.201 3.784 39.713 hybrid contribution -1.242 1.533 1.251 2.336 sum 37.205 -7.668 5.036 38.319 Atomic orbital electron populations 1.69805 1.08116 1.29211 1.50328 1.26106 0.96466 1.02683 0.96100 0.85375 0.79439 0.76796 0.79981 1.18016 1.20128 1.15588 1.19016 0.81535 0.94941 1.50304 0.92582 1.42038 1.05814 1.07654 1.67787 1.20962 0.90963 0.83299 0.81098 1.90547 1.71395 1.32720 1.55081 1.21737 0.89581 0.91895 1.04137 1.60201 1.06299 1.11889 1.51091 1.22908 0.86229 1.00628 0.93085 0.87320 1.22674 0.94057 0.96787 1.01724 1.22641 0.99313 0.96473 0.84604 1.48113 1.12177 1.50280 1.23809 1.17196 0.82326 0.79581 0.81316 1.90730 1.83629 1.43533 1.29543 1.19421 0.95625 1.15139 1.02057 1.25130 0.93290 0.93928 0.98322 1.77160 1.11365 1.23323 1.00514 1.50574 1.13800 1.35740 1.16165 1.23073 0.89803 0.92272 0.95451 1.21189 0.95989 1.02925 0.91343 1.22932 0.93521 0.97462 1.01528 1.22955 0.82681 1.02382 0.92613 1.23062 0.83867 0.98217 0.99349 0.91170 0.77485 0.90836 0.86184 0.83298 0.87470 0.90229 0.88647 0.89284 0.75569 0.88447 0.87270 0.88425 0.84356 0.87104 0.87121 0.91970 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.96 21.66 0.30 -56.28 16 2 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 3 Si 0.96 39.03 27.74 68.60 1.90 40.93 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 7 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 9 N -0.59 -27.83 5.09 -306.98 -1.56 -29.40 16 10 C 0.45 20.02 7.82 87.66 0.69 20.71 16 11 O -0.61 -33.65 15.78 -3.05 -0.05 -33.70 16 12 C 0.06 1.73 6.03 85.56 0.52 2.24 16 13 N -0.66 -18.11 6.04 -488.01 -2.95 -21.06 16 14 C 0.08 1.60 3.39 46.38 0.16 1.76 16 15 H 0.11 1.85 7.83 -2.38 -0.02 1.83 16 16 C -0.11 -1.68 6.64 31.78 0.21 -1.47 16 17 C 0.09 1.21 4.98 86.73 0.43 1.64 16 18 N -0.61 -12.86 3.32 -815.23 -2.71 -15.57 16 19 C 0.60 15.65 7.85 86.66 0.68 16.33 16 20 O -0.59 -19.55 17.15 -4.05 -0.07 -19.62 16 21 C -0.31 -6.69 6.09 -20.13 -0.12 -6.82 16 22 C 0.08 1.42 10.44 85.65 0.89 2.31 16 23 N -0.31 -6.11 12.64 -56.42 -0.71 -6.83 16 24 N -0.38 -6.32 4.81 -328.35 -1.58 -7.90 16 25 C 0.13 2.42 7.30 42.44 0.31 2.73 16 26 C -0.08 -0.84 6.86 30.60 0.21 -0.63 16 27 C -0.12 -0.30 7.18 31.60 0.23 -0.07 16 28 C 0.11 0.68 7.78 86.71 0.67 1.36 16 29 C 0.08 1.78 6.51 86.93 0.57 2.35 16 30 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.39 15.19 5.76 -92.71 -0.53 14.65 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 2.88 8.09 -2.39 -0.02 2.86 16 34 H 0.35 10.43 7.89 -89.69 -0.71 9.72 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.10 0.89 6.85 -2.39 -0.02 0.87 16 38 H 0.09 0.94 6.98 -2.38 -0.02 0.92 16 39 H 0.23 2.48 4.48 -2.91 -0.01 2.47 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.14 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.06 1.49 7.76 -2.39 -0.02 1.47 16 47 H 0.07 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -89.82 384.43 -0.93 -90.75 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.27 Total: 35.07 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.76 Total: 23.60 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -9.21 Total: -137.03 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.12 Total: -53.32 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Total: -89.82 -0.93 -90.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183094900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.067 kcal (2) G-P(sol) polarization free energy of solvation -89.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds