Wall clock time and date at job start Wed Apr 1 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48495 * 109.47174 * 270.00042 * 3 2 1 5 5 H 1.48503 * 109.47273 * 30.00107 * 3 2 1 6 6 H 1.48503 * 109.47022 * 149.99720 * 3 2 1 7 7 C 1.38952 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99897 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00037 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99706 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46460 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99599 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.64653 * 323.31248 * 14 13 12 16 16 C 1.55163 * 110.87319 * 200.06370 * 14 13 12 17 17 C 1.54903 * 101.58291 * 206.06430 * 16 14 13 18 18 N 1.47432 * 104.83274 * 37.00890 * 17 16 14 19 19 C 1.34776 * 125.64860 * 155.84807 * 18 17 16 20 20 O 1.21603 * 120.00161 * 175.67182 * 19 18 17 21 21 C 1.47432 * 120.00150 * 355.67400 * 19 18 17 22 22 C 1.38040 * 126.41388 * 34.03845 * 21 19 18 23 23 N 1.34258 * 107.41499 * 179.87622 * 22 21 19 24 24 H 0.97007 * 125.75852 * 180.18610 * 23 22 21 25 25 N 1.39935 * 108.49607 * 0.39556 * 23 22 21 26 26 C 1.30450 * 108.89153 * 359.75138 * 25 23 22 27 27 C 1.50704 * 125.98611 * 179.97438 * 26 25 23 28 28 C 1.52993 * 117.49836 * 8.74654 * 27 26 25 29 29 C 1.52994 * 117.49809 * 300.08569 * 27 26 25 30 30 C 1.47022 * 108.70020 * 335.87246 * 18 17 16 31 31 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00312 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47463 * 59.99991 * 12 10 9 34 34 H 1.09000 * 109.46593 * 299.99229 * 12 10 9 35 35 H 1.00896 * 111.00636 * 303.95201 * 13 12 10 36 36 H 1.09003 * 111.00495 * 87.99211 * 16 14 13 37 37 H 1.08995 * 111.00150 * 324.14312 * 16 14 13 38 38 H 1.08998 * 110.37067 * 278.17210 * 17 16 14 39 39 H 1.08998 * 110.37045 * 155.85020 * 17 16 14 40 40 H 1.08006 * 126.29568 * 0.02562 * 22 21 19 41 41 H 1.09002 * 115.54624 * 154.42018 * 27 26 25 42 42 H 1.09002 * 117.50387 * 0.02562 * 28 27 26 43 43 H 1.09007 * 117.49847 * 145.02166 * 28 27 26 44 44 H 1.09002 * 117.50202 * 214.97601 * 29 27 26 45 45 H 1.09001 * 117.50181 * 359.97438 * 29 27 26 46 46 H 1.08997 * 109.88199 * 120.47656 * 30 18 17 47 47 H 1.08998 * 109.87860 * 241.63854 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0000 13 7 2.1983 -5.9795 -0.0005 14 6 1.4980 -7.2708 -0.0005 15 1 0.5960 -7.2188 0.6092 16 6 2.4317 -8.4061 0.4964 17 6 1.8115 -9.6447 -0.1968 18 7 1.3788 -9.1595 -1.5201 19 6 1.2130 -9.9204 -2.6200 20 8 0.7758 -9.4259 -3.6413 21 6 1.5616 -11.3525 -2.5852 22 6 1.4330 -12.2011 -1.5040 23 7 1.8574 -13.4141 -1.8925 24 1 1.8793 -14.2109 -1.3397 25 7 2.2674 -13.3342 -3.2281 26 6 2.0957 -12.1119 -3.6502 27 6 2.4122 -11.5995 -5.0317 28 6 2.7922 -12.6294 -6.0973 29 6 3.8617 -11.7054 -5.5095 30 6 1.1588 -7.7080 -1.4411 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3907 0.0005 33 1 0.6173 -4.9205 -0.8902 34 1 0.6168 -4.9208 0.8898 35 1 2.8332 -5.9122 -0.7818 36 1 2.3869 -8.5022 1.5812 37 1 3.4564 -8.2435 0.1622 38 1 0.9560 -10.0091 0.3719 39 1 2.5578 -10.4315 -0.3067 40 1 1.0575 -11.9382 -0.5260 41 1 1.8383 -10.7304 -5.3536 42 1 2.8130 -13.6777 -5.7994 43 1 2.4688 -12.4378 -7.1205 44 1 4.2415 -10.9064 -6.1463 45 1 4.5866 -12.1453 -4.8246 46 1 1.8115 -7.1952 -2.1475 47 1 0.1165 -7.4785 -1.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186746936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:01 Heat of formation + Delta-G solvation = 39.975491 kcal Electronic energy + Delta-G solvation = -29468.209898 eV Core-core repulsion = 25267.556241 eV Total energy + Delta-G solvation = -4200.653656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88531 -39.93252 -38.36606 -37.60335 -37.27130 -34.75951 -33.79874 -31.84790 -31.42219 -31.14577 -30.44381 -28.54639 -26.24601 -24.57440 -24.40931 -23.57125 -22.63913 -22.16574 -21.03451 -20.16306 -19.56363 -19.29335 -18.11175 -17.86607 -16.98229 -16.65902 -16.00997 -15.84632 -15.51736 -15.23191 -15.10744 -14.95606 -14.48147 -14.43103 -14.09824 -13.79575 -13.67687 -13.53924 -12.93263 -12.85578 -12.51924 -12.33499 -12.22707 -11.91548 -11.81071 -11.73751 -11.54081 -11.44803 -11.39467 -11.29748 -11.03718 -10.96585 -10.66600 -10.39095 -10.21833 -10.04946 -9.66993 -9.51185 -9.17363 -8.83257 -8.49949 -8.13547 -7.96577 -6.41727 -3.82576 1.15252 1.75436 2.22792 2.74799 3.03181 3.18324 3.27092 3.32946 3.68180 3.89709 3.93695 4.04739 4.16199 4.26057 4.39455 4.40841 4.52155 4.69700 4.77453 4.88994 4.92798 5.00729 5.04116 5.10474 5.15709 5.24996 5.27237 5.28571 5.39583 5.57307 5.61105 5.62621 5.76679 5.84710 5.86979 5.90730 5.94958 5.95994 5.99423 6.12057 6.25695 6.65458 7.10784 7.12998 7.33661 7.54507 7.55409 8.05657 8.05879 8.60647 9.17657 9.53788 10.04900 10.75905 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001816 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.682562 B =15416.961934 C =16125.532109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.653 5.653 14 C 0.078 3.922 15 H 0.095 0.905 16 C -0.121 4.121 17 C 0.094 3.906 18 N -0.612 5.612 19 C 0.608 3.392 20 O -0.536 6.536 21 C -0.272 4.272 22 C 0.100 3.900 23 N -0.462 5.462 24 H 0.445 0.555 25 N -0.295 5.295 26 C 0.165 3.835 27 C -0.091 4.091 28 C -0.164 4.164 29 C -0.161 4.161 30 C 0.078 3.922 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.353 0.647 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.188 0.812 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -28.602 -1.929 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.285 5.285 14 C -0.034 4.034 15 H 0.113 0.887 16 C -0.159 4.159 17 C -0.030 4.030 18 N -0.346 5.346 19 C 0.397 3.603 20 O -0.413 6.413 21 C -0.287 4.287 22 C -0.052 4.052 23 N -0.166 5.166 24 H 0.289 0.711 25 N -0.118 5.118 26 C -0.003 4.003 27 C -0.111 4.111 28 C -0.201 4.201 29 C -0.199 4.199 30 C -0.046 4.046 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.174 0.826 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.205 0.795 41 H 0.156 0.844 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.223 -29.338 -2.161 29.443 hybrid contribution -0.997 1.213 -0.129 1.575 sum 0.226 -28.125 -2.290 28.219 Atomic orbital electron populations 1.69610 1.05934 1.28183 1.50512 1.25271 0.95648 0.99755 0.97301 0.85850 0.79235 0.80775 0.78389 1.20411 1.20932 1.19402 1.19701 0.93377 0.82210 1.47610 0.87900 1.41860 1.09222 1.04606 1.64228 1.19774 0.88373 0.84702 0.84623 1.90527 1.13740 1.87047 1.55488 1.21752 0.94405 0.90918 1.01429 1.60195 1.17991 0.99081 1.51200 1.22709 0.97194 0.90143 0.93330 0.88654 1.22797 1.00083 0.92146 1.00901 1.22550 0.98839 0.98226 0.83343 1.48235 1.67750 1.08597 1.10051 1.16900 0.77264 0.84225 0.81953 1.90779 1.45392 1.74027 1.31070 1.20095 1.18520 0.95413 0.94692 1.23266 0.96943 0.85605 0.99406 1.46056 1.49771 1.10191 1.10605 0.71059 1.77102 1.23967 1.19392 0.91299 1.21388 0.94840 0.89384 0.94639 1.20554 1.00091 1.02271 0.88198 1.23005 1.02682 0.96757 0.97693 1.23020 0.90822 1.02714 1.03331 1.22921 1.02067 0.80444 0.99207 0.91858 0.77432 0.93532 0.89370 0.82563 0.89216 0.89782 0.91230 0.90382 0.79531 0.84422 0.88058 0.88116 0.87869 0.88657 0.91076 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 11 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 12 C 0.05 0.79 6.02 -4.97 -0.03 0.76 16 13 N -0.65 -9.75 5.99 -106.05 -0.63 -10.38 16 14 C 0.08 0.85 3.23 -65.88 -0.21 0.63 16 15 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 16 C -0.12 -1.03 6.78 -24.58 -0.17 -1.19 16 17 C 0.09 0.66 5.36 -2.53 -0.01 0.64 16 18 N -0.61 -6.55 3.33 -171.79 -0.57 -7.12 16 19 C 0.61 7.78 7.67 -12.52 -0.10 7.68 16 20 O -0.54 -8.81 16.00 5.28 0.08 -8.72 16 21 C -0.27 -2.87 5.67 -105.07 -0.60 -3.46 16 22 C 0.10 0.65 10.07 -16.56 -0.17 0.48 16 23 N -0.46 -2.89 7.29 30.85 0.22 -2.67 16 24 H 0.44 1.10 8.96 -182.72 -1.64 -0.54 16 25 N -0.30 -2.93 12.22 33.90 0.41 -2.52 16 26 C 0.16 1.83 6.79 -82.02 -0.56 1.27 16 27 C -0.09 -0.97 5.94 -91.78 -0.55 -1.51 16 28 C -0.16 -1.39 10.14 -26.70 -0.27 -1.66 16 29 C -0.16 -1.41 10.24 -26.70 -0.27 -1.68 16 30 C 0.08 0.92 6.52 -3.07 -0.02 0.90 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 33 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 35 H 0.35 5.65 7.86 -39.29 -0.31 5.34 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.33 7.71 -51.93 -0.40 -0.07 16 39 H 0.08 0.46 6.58 -51.93 -0.34 0.11 16 40 H 0.19 0.52 6.47 -52.48 -0.34 0.18 16 41 H 0.14 1.66 6.94 -51.93 -0.36 1.30 16 42 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 43 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.95 7.57 -51.93 -0.39 0.56 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -35.86 393.55 -9.91 -45.77 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.81 Total: 12.17 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.27 Total: 5.00 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.10 Total: -60.60 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.17 Total: -24.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.86 -9.91 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186746936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.749 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds