Wall clock time and date at job start Wed Apr 1 2020 05:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48495 * 109.47174 * 270.00042 * 3 2 1 5 5 H 1.48503 * 109.47273 * 30.00107 * 3 2 1 6 6 H 1.48503 * 109.47022 * 149.99720 * 3 2 1 7 7 C 1.38952 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99897 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00037 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99706 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46460 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99599 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.64653 * 323.31248 * 14 13 12 16 16 C 1.55163 * 110.87319 * 200.06370 * 14 13 12 17 17 C 1.54903 * 101.58291 * 206.06430 * 16 14 13 18 18 N 1.47432 * 104.83274 * 37.00890 * 17 16 14 19 19 C 1.34776 * 125.64860 * 155.84807 * 18 17 16 20 20 O 1.21603 * 120.00161 * 175.67182 * 19 18 17 21 21 C 1.47432 * 120.00150 * 355.67400 * 19 18 17 22 22 C 1.38040 * 126.41388 * 34.03845 * 21 19 18 23 23 N 1.34258 * 107.41499 * 179.87622 * 22 21 19 24 24 H 0.97007 * 125.75852 * 180.18610 * 23 22 21 25 25 N 1.39935 * 108.49607 * 0.39556 * 23 22 21 26 26 C 1.30450 * 108.89153 * 359.75138 * 25 23 22 27 27 C 1.50704 * 125.98611 * 179.97438 * 26 25 23 28 28 C 1.52993 * 117.49836 * 8.74654 * 27 26 25 29 29 C 1.52994 * 117.49809 * 300.08569 * 27 26 25 30 30 C 1.47022 * 108.70020 * 335.87246 * 18 17 16 31 31 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00312 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47463 * 59.99991 * 12 10 9 34 34 H 1.09000 * 109.46593 * 299.99229 * 12 10 9 35 35 H 1.00896 * 111.00636 * 303.95201 * 13 12 10 36 36 H 1.09003 * 111.00495 * 87.99211 * 16 14 13 37 37 H 1.08995 * 111.00150 * 324.14312 * 16 14 13 38 38 H 1.08998 * 110.37067 * 278.17210 * 17 16 14 39 39 H 1.08998 * 110.37045 * 155.85020 * 17 16 14 40 40 H 1.08006 * 126.29568 * 0.02562 * 22 21 19 41 41 H 1.09002 * 115.54624 * 154.42018 * 27 26 25 42 42 H 1.09002 * 117.50387 * 0.02562 * 28 27 26 43 43 H 1.09007 * 117.49847 * 145.02166 * 28 27 26 44 44 H 1.09002 * 117.50202 * 214.97601 * 29 27 26 45 45 H 1.09001 * 117.50181 * 359.97438 * 29 27 26 46 46 H 1.08997 * 109.88199 * 120.47656 * 30 18 17 47 47 H 1.08998 * 109.87860 * 241.63854 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0000 13 7 2.1983 -5.9795 -0.0005 14 6 1.4980 -7.2708 -0.0005 15 1 0.5960 -7.2188 0.6092 16 6 2.4317 -8.4061 0.4964 17 6 1.8115 -9.6447 -0.1968 18 7 1.3788 -9.1595 -1.5201 19 6 1.2130 -9.9204 -2.6200 20 8 0.7758 -9.4259 -3.6413 21 6 1.5616 -11.3525 -2.5852 22 6 1.4330 -12.2011 -1.5040 23 7 1.8574 -13.4141 -1.8925 24 1 1.8793 -14.2109 -1.3397 25 7 2.2674 -13.3342 -3.2281 26 6 2.0957 -12.1119 -3.6502 27 6 2.4122 -11.5995 -5.0317 28 6 2.7922 -12.6294 -6.0973 29 6 3.8617 -11.7054 -5.5095 30 6 1.1588 -7.7080 -1.4411 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3907 0.0005 33 1 0.6173 -4.9205 -0.8902 34 1 0.6168 -4.9208 0.8898 35 1 2.8332 -5.9122 -0.7818 36 1 2.3869 -8.5022 1.5812 37 1 3.4564 -8.2435 0.1622 38 1 0.9560 -10.0091 0.3719 39 1 2.5578 -10.4315 -0.3067 40 1 1.0575 -11.9382 -0.5260 41 1 1.8383 -10.7304 -5.3536 42 1 2.8130 -13.6777 -5.7994 43 1 2.4688 -12.4378 -7.1205 44 1 4.2415 -10.9064 -6.1463 45 1 4.5866 -12.1453 -4.8246 46 1 1.8115 -7.1952 -2.1475 47 1 0.1165 -7.4785 -1.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186746936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:00 Heat of formation + Delta-G solvation = 11.784195 kcal Electronic energy + Delta-G solvation = -29469.432364 eV Core-core repulsion = 25267.556241 eV Total energy + Delta-G solvation = -4201.876122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.54892 -40.82693 -40.06799 -38.66464 -38.01987 -36.18283 -35.53046 -33.27236 -32.53647 -32.17699 -31.18583 -29.54888 -27.74040 -25.97754 -25.09351 -24.72591 -23.33040 -22.85276 -21.89713 -21.09047 -20.92061 -20.26657 -19.91819 -18.78174 -17.95904 -17.57797 -17.46064 -16.74466 -16.57540 -16.39113 -16.16798 -15.99948 -15.78932 -15.68331 -15.26105 -15.14200 -14.78118 -14.34546 -14.19091 -13.89979 -13.65550 -13.50113 -13.39010 -13.15195 -12.97673 -12.89085 -12.54577 -12.47468 -12.42828 -12.37499 -12.18129 -12.10923 -11.98871 -11.70871 -11.50424 -11.41972 -10.98014 -10.35204 -10.32004 -10.01171 -9.91984 -9.63585 -9.36687 -8.46235 -5.94864 0.56503 0.97424 1.38413 1.42240 1.54962 1.68318 1.95619 2.05976 2.20655 2.30165 2.91281 2.96030 3.21060 3.29562 3.42989 3.55097 3.67653 3.69678 3.93638 4.01321 4.07724 4.10322 4.20390 4.27550 4.34451 4.38248 4.41543 4.50355 4.58721 4.60109 4.67035 4.71173 4.79706 4.80227 4.89189 5.11381 5.14889 5.20634 5.23926 5.26539 5.33427 5.41625 5.89492 6.09783 6.24554 6.29372 6.44372 6.55791 6.60421 7.13083 7.16128 7.56846 8.12035 8.71055 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001816 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.682562 B =15416.961934 C =16125.532109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.062 3.938 13 N -0.663 5.663 14 C 0.083 3.917 15 H 0.117 0.883 16 C -0.115 4.115 17 C 0.094 3.906 18 N -0.610 5.610 19 C 0.603 3.397 20 O -0.589 6.589 21 C -0.310 4.310 22 C 0.135 3.865 23 N -0.443 5.443 24 H 0.463 0.537 25 N -0.315 5.315 26 C 0.148 3.852 27 C -0.114 4.114 28 C -0.150 4.150 29 C -0.155 4.155 30 C 0.080 3.920 31 H 0.277 0.723 32 H 0.397 0.603 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.343 0.657 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -30.567 0.142 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.070 4.070 13 N -0.294 5.294 14 C -0.028 4.028 15 H 0.135 0.865 16 C -0.153 4.153 17 C -0.028 4.028 18 N -0.343 5.343 19 C 0.394 3.606 20 O -0.470 6.470 21 C -0.325 4.325 22 C -0.019 4.019 23 N -0.150 5.150 24 H 0.312 0.688 25 N -0.138 5.138 26 C -0.019 4.019 27 C -0.135 4.135 28 C -0.188 4.188 29 C -0.193 4.193 30 C -0.045 4.045 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.249 0.751 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.671 -31.363 -0.047 31.370 hybrid contribution -0.816 1.740 -0.736 2.058 sum -0.145 -29.623 -0.783 29.634 Atomic orbital electron populations 1.69669 1.06795 1.29287 1.50310 1.26046 0.96571 1.02438 0.96325 0.84928 0.77925 0.76910 0.78580 1.19790 1.19486 1.19721 1.19660 0.92701 0.84055 1.49894 0.90330 1.41937 1.09363 1.04737 1.65004 1.20909 0.88264 0.86233 0.82179 1.90494 1.15897 1.87983 1.56695 1.21626 0.94059 0.87972 1.03327 1.60258 1.18035 1.00247 1.50856 1.22831 0.98382 0.88700 0.92915 0.86545 1.22802 0.98645 0.91548 1.02337 1.22859 1.00734 0.97869 0.81336 1.48290 1.66953 1.07931 1.11132 1.17296 0.76532 0.85258 0.81563 1.90741 1.47952 1.75229 1.33082 1.20046 1.21359 0.94706 0.96361 1.23774 0.94006 0.84387 0.99699 1.46100 1.48194 1.11058 1.09629 0.68783 1.77036 1.24873 1.18766 0.93159 1.21469 0.95524 0.90014 0.94896 1.20486 1.01061 1.02510 0.89396 1.23043 1.01692 0.96312 0.97711 1.23054 0.90117 1.02946 1.03204 1.22786 1.00995 0.81396 0.99324 0.91308 0.76932 0.91906 0.86822 0.83729 0.86874 0.91438 0.87354 0.88579 0.75076 0.86867 0.87953 0.86902 0.87211 0.88595 0.93761 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.35 5.29 -306.98 -1.62 -30.97 16 10 C 0.44 20.55 7.82 87.66 0.69 21.24 16 11 O -0.62 -34.44 15.78 -3.06 -0.05 -34.49 16 12 C 0.06 2.03 6.02 85.56 0.52 2.55 16 13 N -0.66 -19.31 5.99 -489.43 -2.93 -22.24 16 14 C 0.08 1.62 3.23 46.11 0.15 1.77 16 15 H 0.12 1.86 7.89 -2.39 -0.02 1.84 16 16 C -0.11 -1.61 6.78 31.99 0.22 -1.39 16 17 C 0.09 0.95 5.36 86.85 0.47 1.41 16 18 N -0.61 -12.28 3.33 -815.67 -2.71 -14.99 16 19 C 0.60 15.49 7.67 86.67 0.66 16.16 16 20 O -0.59 -20.60 16.00 -4.04 -0.06 -20.67 16 21 C -0.31 -6.18 5.67 -20.15 -0.11 -6.30 16 22 C 0.14 1.27 10.07 84.27 0.85 2.12 16 23 N -0.44 -4.16 7.29 -56.32 -0.41 -4.57 16 24 H 0.46 0.52 8.96 -213.42 -1.91 -1.40 16 25 N -0.32 -5.83 12.22 -46.67 -0.57 -6.40 16 26 C 0.15 3.26 6.79 43.52 0.30 3.56 16 27 C -0.11 -2.57 5.94 -11.54 -0.07 -2.64 16 28 C -0.15 -2.58 10.14 30.62 0.31 -2.26 16 29 C -0.16 -2.79 10.24 30.62 0.31 -2.48 16 30 C 0.08 1.86 6.52 86.73 0.57 2.43 16 31 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 33 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 34 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 35 H 0.34 11.23 7.86 -89.70 -0.70 10.52 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 0.36 7.71 -2.39 -0.02 0.34 16 39 H 0.10 0.69 6.58 -2.39 -0.02 0.67 16 40 H 0.23 -0.11 6.47 -2.91 -0.02 -0.13 16 41 H 0.11 3.06 6.94 -2.39 -0.02 3.05 16 42 H 0.10 1.73 7.90 -2.39 -0.02 1.71 16 43 H 0.11 1.59 8.14 -2.38 -0.02 1.58 16 44 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.25 7.57 -2.39 -0.02 1.24 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -82.93 393.55 -2.22 -85.15 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -2.30 Total: 35.78 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.13 Total: 17.67 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -7.96 Total: -128.64 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.11 Total: -55.16 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -82.93 -2.22 -85.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186746936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.937 kcal (2) G-P(sol) polarization free energy of solvation -82.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds