Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99863 * 3 2 1 5 5 H 1.48499 * 109.47211 * 29.99764 * 3 2 1 6 6 H 1.48502 * 109.47030 * 149.99962 * 3 2 1 7 7 C 1.38949 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00631 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99618 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00684 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47658 * 180.02562 * 12 10 9 14 14 C 1.46893 * 110.99987 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46803 * 179.97438 * 14 13 12 16 16 C 1.53042 * 109.45622 * 175.00087 * 15 14 13 17 17 C 1.53188 * 109.31078 * 181.38810 * 16 15 14 18 18 N 1.46933 * 108.77511 * 305.36092 * 17 16 15 19 19 C 1.34773 * 120.63030 * 233.58518 * 18 17 16 20 20 O 1.21557 * 119.99656 * 183.75890 * 19 18 17 21 21 C 1.47826 * 120.00389 * 3.75836 * 19 18 17 22 22 C 1.39946 * 120.94037 * 309.97577 * 21 19 18 23 23 N 1.32150 * 118.92287 * 179.76513 * 22 21 19 24 24 C 1.31864 * 120.96848 * 0.51908 * 23 22 21 25 25 N 1.31866 * 122.09287 * 359.72893 * 24 23 22 26 26 C 1.32145 * 120.97116 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73428 * 53.86499 * 18 17 16 28 28 C 1.53038 * 109.46181 * 295.06628 * 15 14 13 29 29 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99422 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46872 * 59.99347 * 12 10 9 32 32 H 1.09001 * 109.46634 * 299.99890 * 12 10 9 33 33 H 1.00905 * 110.99222 * 303.95285 * 13 12 10 34 34 H 1.09005 * 109.47379 * 60.00157 * 14 13 12 35 35 H 1.08993 * 109.47671 * 299.99631 * 14 13 12 36 36 H 1.08997 * 109.45973 * 55.03335 * 15 14 13 37 37 H 1.08996 * 109.50287 * 61.43684 * 16 15 14 38 38 H 1.09001 * 109.52748 * 301.35287 * 16 15 14 39 39 H 1.09005 * 109.59018 * 185.58033 * 17 16 15 40 40 H 1.09002 * 109.70644 * 65.21976 * 17 16 15 41 41 H 1.08002 * 120.53995 * 359.97438 * 22 21 19 42 42 H 1.08000 * 118.95049 * 179.75132 * 24 23 22 43 43 H 1.07999 * 120.54046 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.59015 * 65.92390 * 27 18 17 45 45 H 1.09000 * 109.58492 * 186.35139 * 27 18 17 46 46 H 1.09001 * 109.49614 * 298.56871 * 28 15 14 47 47 H 1.08997 * 109.49578 * 58.66153 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0030 14 6 1.4980 -7.2708 0.0031 15 6 2.5230 -8.4068 0.0045 16 6 1.7970 -9.7482 0.1304 17 6 2.8279 -10.8807 0.1664 18 7 3.6924 -10.7711 -1.0167 19 6 3.8630 -11.8226 -1.8423 20 8 4.6335 -11.7411 -2.7789 21 6 3.1132 -13.0750 -1.6088 22 6 3.0918 -13.6759 -0.3451 23 7 2.4048 -14.7926 -0.1799 24 6 1.7553 -15.3448 -1.1859 25 7 1.7531 -14.8151 -2.3935 26 6 2.4090 -13.6962 -2.6465 27 6 4.3721 -9.4952 -1.2791 28 6 3.3195 -8.3765 -1.3019 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6181 -4.9208 -0.8896 32 1 0.6161 -4.9204 0.8903 33 1 2.8343 -5.9127 -0.7775 34 1 0.8741 -7.3459 -0.8876 35 1 0.8721 -7.3446 0.8923 36 1 3.2028 -8.2814 0.8472 37 1 1.1355 -9.8856 -0.7249 38 1 1.2109 -9.7605 1.0493 39 1 2.3149 -11.8424 0.1561 40 1 3.4326 -10.7987 1.0696 41 1 3.6253 -13.2323 0.4826 42 1 1.2075 -16.2598 -1.0153 43 1 2.4021 -13.2682 -3.6380 44 1 5.0998 -9.3000 -0.4913 45 1 4.8782 -9.5424 -2.2433 46 1 2.6435 -8.5268 -2.1437 47 1 3.8173 -7.4121 -1.4021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205044970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -16.764279 kcal Electronic energy + Delta-G solvation = -29307.307292 eV Core-core repulsion = 25104.193215 eV Total energy + Delta-G solvation = -4203.114077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88914 -40.29621 -38.55188 -37.96827 -35.74738 -34.45385 -33.96493 -33.38704 -32.55502 -31.29753 -31.19047 -28.29709 -26.29303 -25.49331 -25.27173 -24.07870 -23.51468 -22.54783 -20.99840 -19.80043 -19.25689 -18.45551 -18.25755 -17.91957 -17.63836 -16.62936 -16.32128 -15.74595 -15.57475 -15.05758 -14.77389 -14.75763 -14.58035 -14.45105 -14.33566 -14.25396 -13.98062 -13.78744 -13.61989 -13.26179 -13.07950 -12.54053 -12.52398 -12.21885 -11.86740 -11.69410 -11.61407 -11.54627 -11.48232 -11.10010 -11.02059 -10.84720 -10.63056 -10.51596 -10.40735 -10.23471 -10.09030 -9.92673 -9.52750 -9.13941 -8.48645 -8.09439 -7.97917 -6.43538 -3.84432 -0.05461 0.38931 2.07960 2.41459 3.11161 3.16583 3.25417 3.31368 3.45494 3.53163 3.76676 3.85641 3.88714 4.02874 4.22439 4.30820 4.34031 4.50744 4.63196 4.68141 4.71405 4.91554 4.95382 5.04965 5.07754 5.16569 5.23608 5.32800 5.37029 5.39464 5.54051 5.61652 5.63133 5.66952 5.75524 5.79744 5.86924 5.95456 6.10721 6.15887 6.20391 6.25488 6.82241 7.17796 7.36683 7.53508 7.56212 7.62138 8.04463 8.59235 9.16038 9.52355 10.03654 10.74158 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.001588 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.269890 B =17630.660089 C =17985.996114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.064 3.936 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.099 3.901 18 N -0.600 5.600 19 C 0.569 3.431 20 O -0.526 6.526 21 C -0.233 4.233 22 C 0.180 3.820 23 N -0.519 5.519 24 C 0.310 3.690 25 N -0.518 5.518 26 C 0.200 3.800 27 C 0.113 3.887 28 C -0.133 4.133 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.176 0.824 42 H 0.203 0.797 43 H 0.177 0.823 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 -28.594 -0.468 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.066 4.066 15 C -0.105 4.105 16 C -0.167 4.167 17 C -0.024 4.024 18 N -0.333 5.333 19 C 0.355 3.645 20 O -0.403 6.403 21 C -0.240 4.240 22 C 0.013 3.987 23 N -0.232 5.232 24 C 0.023 3.977 25 N -0.231 5.231 26 C 0.033 3.967 27 C -0.008 4.008 28 C -0.172 4.172 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.192 0.808 42 H 0.219 0.781 43 H 0.194 0.806 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.781 -29.207 -0.131 29.218 hybrid contribution -0.294 1.641 -0.946 1.917 sum 0.487 -27.566 -1.077 27.592 Atomic orbital electron populations 1.69612 1.05947 1.28171 1.50573 1.25266 0.95639 0.99741 0.97290 0.85851 0.79252 0.80768 0.78377 1.20424 1.20916 1.19392 1.19709 0.93391 0.82239 1.47623 0.87901 1.41864 1.09202 1.04622 1.64315 1.19810 0.88395 0.84729 0.84513 1.90520 1.13749 1.87077 1.55453 1.21667 0.94388 0.91036 1.01145 1.60113 1.18797 0.99931 1.51384 1.21982 0.95211 0.88972 1.00387 1.21161 0.97444 0.93208 0.98648 1.21932 0.97590 0.94073 1.03108 1.22068 0.92670 0.99895 0.87796 1.48075 1.47119 1.12146 1.25931 1.17849 0.81784 0.82632 0.82283 1.90839 1.36524 1.82428 1.30487 1.21772 1.04609 0.99915 0.97704 1.23550 0.90879 0.89410 0.94868 1.68519 1.09165 1.10474 1.35034 1.25283 0.91176 0.97878 0.83362 1.68554 1.19740 1.11108 1.23675 1.23405 0.86233 0.88298 0.98747 1.21817 0.94649 0.80924 1.03427 1.22102 0.98127 0.98998 0.97933 0.91868 0.77470 0.93971 0.89637 0.83155 0.95638 0.90961 0.89500 0.91457 0.90075 0.89974 0.90164 0.80753 0.78066 0.80624 0.90551 0.88638 0.91612 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 10 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 11 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 N -0.67 -10.11 6.12 -115.06 -0.70 -10.82 16 14 C 0.06 0.70 5.14 -3.82 -0.02 0.68 16 15 C -0.09 -0.73 2.36 -90.57 -0.21 -0.95 16 16 C -0.13 -0.82 5.36 -26.61 -0.14 -0.96 16 17 C 0.10 0.55 5.41 -3.71 -0.02 0.53 16 18 N -0.60 -4.67 2.97 -173.62 -0.51 -5.18 16 19 C 0.57 5.32 7.29 -12.34 -0.09 5.23 16 20 O -0.53 -6.81 16.48 5.32 0.09 -6.72 16 21 C -0.23 -1.77 5.04 -104.69 -0.53 -2.29 16 22 C 0.18 1.14 8.67 -16.78 -0.15 1.00 16 23 N -0.52 -3.65 10.42 -14.25 -0.15 -3.80 16 24 C 0.31 1.97 12.27 -92.03 -1.13 0.84 16 25 N -0.52 -4.02 10.42 -14.25 -0.15 -4.17 16 26 C 0.20 1.52 11.05 -16.78 -0.19 1.34 16 27 C 0.11 0.96 6.45 -3.49 -0.02 0.94 16 28 C -0.13 -1.18 5.18 -26.39 -0.14 -1.32 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.35 5.43 6.65 -39.29 -0.26 5.17 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.39 4.52 -51.93 -0.23 0.16 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.18 0.72 7.09 -52.49 -0.37 0.34 16 42 H 0.20 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.93 7.02 -51.93 -0.36 0.56 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.87 6.62 -51.93 -0.34 0.52 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -34.23 387.59 -9.33 -43.56 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.48 Total: 10.77 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.99 Total: 8.04 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.85 Total: -61.85 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.18 Total: -22.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.23 -9.33 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205044970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.800 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds