Wall clock time and date at job start Wed Apr 1 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99863 * 3 2 1 5 5 H 1.48499 * 109.47211 * 29.99764 * 3 2 1 6 6 H 1.48502 * 109.47030 * 149.99962 * 3 2 1 7 7 C 1.38949 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00631 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99618 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00684 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47658 * 180.02562 * 12 10 9 14 14 C 1.46893 * 110.99987 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46803 * 179.97438 * 14 13 12 16 16 C 1.53042 * 109.45622 * 175.00087 * 15 14 13 17 17 C 1.53188 * 109.31078 * 181.38810 * 16 15 14 18 18 N 1.46933 * 108.77511 * 305.36092 * 17 16 15 19 19 C 1.34773 * 120.63030 * 233.58518 * 18 17 16 20 20 O 1.21557 * 119.99656 * 183.75890 * 19 18 17 21 21 C 1.47826 * 120.00389 * 3.75836 * 19 18 17 22 22 C 1.39946 * 120.94037 * 309.97577 * 21 19 18 23 23 N 1.32150 * 118.92287 * 179.76513 * 22 21 19 24 24 C 1.31864 * 120.96848 * 0.51908 * 23 22 21 25 25 N 1.31866 * 122.09287 * 359.72893 * 24 23 22 26 26 C 1.32145 * 120.97116 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73428 * 53.86499 * 18 17 16 28 28 C 1.53038 * 109.46181 * 295.06628 * 15 14 13 29 29 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99422 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46872 * 59.99347 * 12 10 9 32 32 H 1.09001 * 109.46634 * 299.99890 * 12 10 9 33 33 H 1.00905 * 110.99222 * 303.95285 * 13 12 10 34 34 H 1.09005 * 109.47379 * 60.00157 * 14 13 12 35 35 H 1.08993 * 109.47671 * 299.99631 * 14 13 12 36 36 H 1.08997 * 109.45973 * 55.03335 * 15 14 13 37 37 H 1.08996 * 109.50287 * 61.43684 * 16 15 14 38 38 H 1.09001 * 109.52748 * 301.35287 * 16 15 14 39 39 H 1.09005 * 109.59018 * 185.58033 * 17 16 15 40 40 H 1.09002 * 109.70644 * 65.21976 * 17 16 15 41 41 H 1.08002 * 120.53995 * 359.97438 * 22 21 19 42 42 H 1.08000 * 118.95049 * 179.75132 * 24 23 22 43 43 H 1.07999 * 120.54046 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.59015 * 65.92390 * 27 18 17 45 45 H 1.09000 * 109.58492 * 186.35139 * 27 18 17 46 46 H 1.09001 * 109.49614 * 298.56871 * 28 15 14 47 47 H 1.08997 * 109.49578 * 58.66153 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0030 14 6 1.4980 -7.2708 0.0031 15 6 2.5230 -8.4068 0.0045 16 6 1.7970 -9.7482 0.1304 17 6 2.8279 -10.8807 0.1664 18 7 3.6924 -10.7711 -1.0167 19 6 3.8630 -11.8226 -1.8423 20 8 4.6335 -11.7411 -2.7789 21 6 3.1132 -13.0750 -1.6088 22 6 3.0918 -13.6759 -0.3451 23 7 2.4048 -14.7926 -0.1799 24 6 1.7553 -15.3448 -1.1859 25 7 1.7531 -14.8151 -2.3935 26 6 2.4090 -13.6962 -2.6465 27 6 4.3721 -9.4952 -1.2791 28 6 3.3195 -8.3765 -1.3019 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6181 -4.9208 -0.8896 32 1 0.6161 -4.9204 0.8903 33 1 2.8343 -5.9127 -0.7775 34 1 0.8741 -7.3459 -0.8876 35 1 0.8721 -7.3446 0.8923 36 1 3.2028 -8.2814 0.8472 37 1 1.1355 -9.8856 -0.7249 38 1 1.2109 -9.7605 1.0493 39 1 2.3149 -11.8424 0.1561 40 1 3.4326 -10.7987 1.0696 41 1 3.6253 -13.2323 0.4826 42 1 1.2075 -16.2598 -1.0153 43 1 2.4021 -13.2682 -3.6380 44 1 5.0998 -9.3000 -0.4913 45 1 4.8782 -9.5424 -2.2433 46 1 2.6435 -8.5268 -2.1437 47 1 3.8173 -7.4121 -1.4021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205044970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:46 Heat of formation + Delta-G solvation = -41.707886 kcal Electronic energy + Delta-G solvation = -29308.388928 eV Core-core repulsion = 25104.193215 eV Total energy + Delta-G solvation = -4204.195713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44294 -40.95091 -40.16251 -38.97675 -36.80974 -35.88922 -34.98576 -34.20067 -33.37043 -33.16357 -31.87279 -29.41094 -27.48462 -26.38549 -25.88678 -25.40302 -24.19297 -23.40482 -21.72084 -21.09146 -20.41919 -19.90868 -19.02959 -18.71892 -18.26048 -17.85679 -17.32416 -17.05590 -16.45285 -16.36081 -16.02460 -15.70478 -15.47353 -15.40286 -15.27326 -15.05279 -14.85768 -14.74673 -14.62707 -14.19095 -14.12957 -13.87700 -13.49189 -13.24072 -13.13126 -12.95035 -12.81523 -12.64703 -12.42219 -12.27508 -12.12732 -12.06901 -11.81823 -11.54855 -11.50955 -11.35013 -11.17418 -10.69873 -10.45104 -10.34482 -10.01827 -9.79731 -9.30800 -8.47039 -5.95814 -0.57627 -0.13111 1.37964 1.39163 1.41986 1.54678 1.78360 2.05142 2.29106 2.59324 2.93172 3.02637 3.04920 3.20342 3.22899 3.35149 3.53379 3.74013 3.77824 3.84362 3.86898 4.08376 4.27374 4.29223 4.33026 4.37845 4.45801 4.52853 4.55963 4.57268 4.60386 4.71595 4.78025 4.87661 4.94282 4.98292 5.05452 5.14196 5.17863 5.40652 5.44392 5.46332 5.69250 5.90190 6.12020 6.18414 6.42572 6.59823 6.86408 6.87891 7.12349 7.56087 8.11299 8.70281 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.001588 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.269890 B =17630.660089 C =17985.996114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.682 5.682 14 C 0.065 3.935 15 C -0.079 4.079 16 C -0.122 4.122 17 C 0.098 3.902 18 N -0.595 5.595 19 C 0.570 3.430 20 O -0.571 6.571 21 C -0.240 4.240 22 C 0.188 3.812 23 N -0.528 5.528 24 C 0.310 3.690 25 N -0.534 5.534 26 C 0.193 3.807 27 C 0.116 3.884 28 C -0.128 4.128 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.342 0.658 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.199 0.801 42 H 0.232 0.768 43 H 0.179 0.821 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -29.779 0.793 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.063 4.063 15 C -0.097 4.097 16 C -0.160 4.160 17 C -0.024 4.024 18 N -0.326 5.326 19 C 0.357 3.643 20 O -0.451 6.451 21 C -0.248 4.248 22 C 0.021 3.979 23 N -0.242 5.242 24 C 0.024 3.976 25 N -0.248 5.248 26 C 0.027 3.973 27 C -0.006 4.006 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.162 0.838 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.215 0.785 42 H 0.248 0.752 43 H 0.196 0.804 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.374 -30.411 1.156 30.435 hybrid contribution 0.037 1.944 -1.325 2.353 sum -0.337 -28.468 -0.170 28.470 Atomic orbital electron populations 1.69670 1.06815 1.29293 1.50304 1.26035 0.96548 1.02401 0.96253 0.84927 0.77894 0.76886 0.78623 1.19674 1.19522 1.19794 1.19675 0.92732 0.84078 1.49983 0.90312 1.41938 1.09337 1.04743 1.65052 1.20922 0.88294 0.86216 0.82164 1.90488 1.15848 1.87983 1.56645 1.21531 0.94100 0.88225 1.02952 1.60143 1.18971 1.01052 1.51392 1.22094 0.95694 0.87370 1.01155 1.21099 0.96937 0.93740 0.97966 1.21890 0.97562 0.92650 1.03916 1.22268 0.92524 1.00213 0.87390 1.48132 1.46828 1.11382 1.26244 1.18083 0.81236 0.83305 0.81658 1.90815 1.38560 1.83309 1.32415 1.21604 1.05231 0.99487 0.98463 1.23901 0.90176 0.88959 0.94853 1.68625 1.09637 1.10705 1.35204 1.25918 0.90517 0.98364 0.82760 1.68617 1.20354 1.11280 1.24502 1.23534 0.86239 0.88432 0.99085 1.21721 0.94704 0.81237 1.02945 1.22012 0.98054 0.98343 0.98189 0.91302 0.76980 0.91948 0.87706 0.83813 0.94997 0.89830 0.89836 0.91842 0.88189 0.88703 0.88134 0.78472 0.75192 0.80390 0.89624 0.90357 0.92168 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.24 5.29 -307.00 -1.62 -30.86 16 10 C 0.44 20.51 7.82 87.66 0.69 21.20 16 11 O -0.62 -34.19 15.78 -3.08 -0.05 -34.23 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -19.93 6.12 -517.94 -3.17 -23.10 16 14 C 0.07 1.28 5.14 86.31 0.44 1.73 16 15 C -0.08 -1.20 2.36 -10.76 -0.03 -1.23 16 16 C -0.12 -1.21 5.36 30.67 0.16 -1.05 16 17 C 0.10 0.82 5.41 86.36 0.47 1.29 16 18 N -0.59 -8.57 2.97 -821.48 -2.44 -11.01 16 19 C 0.57 10.44 7.29 86.78 0.63 11.07 16 20 O -0.57 -15.23 16.48 -3.90 -0.06 -15.30 16 21 C -0.24 -3.40 5.04 -19.91 -0.10 -3.50 16 22 C 0.19 1.99 8.67 85.06 0.74 2.72 16 23 N -0.53 -6.23 10.42 -198.98 -2.07 -8.31 16 24 C 0.31 3.34 12.27 180.84 2.22 5.56 16 25 N -0.53 -7.67 10.42 -198.99 -2.07 -9.74 16 26 C 0.19 2.85 11.05 85.06 0.94 3.79 16 27 C 0.12 1.94 6.45 86.51 0.56 2.49 16 28 C -0.13 -2.22 5.18 30.82 0.16 -2.06 16 29 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.34 10.67 6.65 -89.69 -0.60 10.08 16 34 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.61 4.52 -2.38 -0.01 0.60 16 40 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.20 1.02 7.09 -2.91 -0.02 1.00 16 42 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.60 7.02 -2.39 -0.02 1.59 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.47 6.62 -2.39 -0.02 1.46 16 Total: -1.00 -75.17 387.59 -0.79 -75.97 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.30 Total: 34.59 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 8.69 Total: 26.28 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -11.10 Total: -132.07 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.11 Total: -49.53 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.17 -0.79 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205044970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.258 kcal (2) G-P(sol) polarization free energy of solvation -75.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds