Wall clock time and date at job start Wed Apr 1 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48498 * 109.47223 * 240.00494 * 3 2 1 5 5 H 1.48501 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47263 * 120.00348 * 3 2 1 7 7 C 1.38949 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99994 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99894 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47024 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99990 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47431 * 179.97438 * 14 13 12 16 16 C 1.53035 * 109.46381 * 174.99843 * 15 14 13 17 17 C 1.53197 * 109.31369 * 181.37307 * 16 15 14 18 18 N 1.46927 * 108.77448 * 305.36554 * 17 16 15 19 19 C 1.34774 * 120.63145 * 233.58547 * 18 17 16 20 20 O 1.21515 * 119.99717 * 7.58783 * 19 18 17 21 21 C 1.48155 * 120.00186 * 187.59047 * 19 18 17 22 22 C 1.39716 * 120.18282 * 189.20269 * 21 19 18 23 23 C 1.38817 * 117.89757 * 179.97438 * 22 21 19 24 24 C 1.38569 * 118.07051 * 359.97438 * 23 22 21 25 25 N 1.32180 * 120.06625 * 0.02562 * 24 23 22 26 26 N 1.28345 * 122.29794 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73556 * 53.85815 * 18 17 16 28 28 C 1.53035 * 109.44908 * 295.06358 * 15 14 13 29 29 H 0.96999 * 120.00977 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99887 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47108 * 60.00742 * 12 10 9 32 32 H 1.09000 * 109.47400 * 300.00305 * 12 10 9 33 33 H 1.00894 * 110.99756 * 303.95520 * 13 12 10 34 34 H 1.08999 * 109.47683 * 59.99801 * 14 13 12 35 35 H 1.09000 * 109.47102 * 299.99617 * 14 13 12 36 36 H 1.09009 * 109.45603 * 55.02550 * 15 14 13 37 37 H 1.09004 * 109.49707 * 61.42344 * 16 15 14 38 38 H 1.08997 * 109.52397 * 301.34195 * 16 15 14 39 39 H 1.09000 * 109.58337 * 185.58120 * 17 16 15 40 40 H 1.09003 * 109.70276 * 65.22194 * 17 16 15 41 41 H 1.08000 * 121.05153 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.96450 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.97007 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58467 * 65.92979 * 27 18 17 45 45 H 1.09006 * 109.58183 * 186.35042 * 27 18 17 46 46 H 1.09000 * 109.49921 * 298.57207 * 28 15 14 47 47 H 1.09002 * 109.50109 * 58.66451 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.4985 -7.2707 -0.0039 15 6 2.5234 -8.4067 -0.0050 16 6 1.7977 -9.7483 0.1196 17 6 2.8288 -10.8809 0.1526 18 7 3.6919 -10.7693 -1.0312 19 6 3.8617 -11.8194 -1.8587 20 8 3.1950 -12.8244 -1.7097 21 6 4.8613 -11.7487 -2.9499 22 6 4.9096 -12.7490 -3.9242 23 6 5.8646 -12.6351 -4.9252 24 6 6.7102 -11.5376 -4.8978 25 7 6.5951 -10.6367 -3.9375 26 7 5.7154 -10.7337 -3.0081 27 6 4.3712 -9.4929 -1.2923 28 6 3.3185 -8.3743 -1.3122 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6171 -4.9201 -0.8920 32 1 0.6176 -4.9213 0.8880 33 1 2.8335 -5.9119 -0.7840 34 1 0.8738 -7.3446 -0.8940 35 1 0.8733 -7.3459 0.8859 36 1 3.2041 -8.2824 0.8373 37 1 1.1352 -9.8843 -0.7353 38 1 1.2127 -9.7620 1.0391 39 1 2.3157 -11.8425 0.1414 40 1 3.4344 -10.8003 1.0553 41 1 4.2257 -13.5844 -3.8992 42 1 5.9461 -13.3801 -5.7028 43 1 7.4641 -11.4183 -5.6619 44 1 5.0997 -9.2990 -0.5050 45 1 4.8763 -9.5386 -2.2572 46 1 2.6417 -8.5232 -2.1535 47 1 3.8163 -7.4097 -1.4115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206661949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:27 Heat of formation + Delta-G solvation = 5.651779 kcal Electronic energy + Delta-G solvation = -29453.498717 eV Core-core repulsion = 25251.356673 eV Total energy + Delta-G solvation = -4202.142044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82666 -40.13656 -38.48008 -37.89194 -35.62414 -34.02789 -33.77122 -33.53142 -32.47693 -31.20405 -31.10512 -28.22146 -26.41866 -25.33334 -25.20004 -23.90499 -23.50408 -22.44188 -20.99076 -19.88650 -19.19634 -18.40902 -17.85737 -17.62084 -17.24637 -16.37645 -16.25376 -16.07898 -15.50652 -15.05650 -14.91431 -14.62122 -14.51225 -14.48666 -14.13794 -14.06183 -13.78611 -13.71222 -13.53846 -13.08738 -12.99771 -12.55073 -12.33405 -11.90911 -11.65902 -11.54731 -11.48645 -11.43447 -11.01759 -10.93679 -10.85973 -10.72963 -10.64777 -10.58158 -10.42334 -10.36113 -10.18885 -9.69950 -9.47610 -8.95020 -8.41965 -8.01464 -7.93056 -6.39256 -3.80038 -0.09693 0.16735 2.19270 2.46761 3.09764 3.22079 3.27398 3.32049 3.33718 3.82398 3.93793 3.94262 4.11254 4.11828 4.26642 4.33228 4.48837 4.63562 4.71802 4.83432 4.91902 5.09281 5.14279 5.15849 5.26757 5.27776 5.29549 5.37273 5.46943 5.51541 5.56304 5.66075 5.77037 5.80612 5.84229 5.94291 5.97811 6.02092 6.08885 6.27470 6.34548 6.35215 6.98755 7.27168 7.57300 7.60381 7.71601 7.99630 8.08818 8.64079 9.20286 9.57070 10.08758 10.78452 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.001819 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.563408 B =15387.090870 C =16673.506665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.064 3.936 15 C -0.087 4.087 16 C -0.127 4.127 17 C 0.110 3.890 18 N -0.584 5.584 19 C 0.573 3.427 20 O -0.535 6.535 21 C 0.027 3.973 22 C -0.066 4.066 23 C -0.119 4.119 24 C 0.057 3.943 25 N -0.243 5.243 26 N -0.202 5.202 27 C 0.075 3.925 28 C -0.133 4.133 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.075 0.925 45 H 0.140 0.860 46 H 0.060 0.940 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -28.011 -8.435 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.065 4.065 15 C -0.106 4.106 16 C -0.165 4.165 17 C -0.012 4.012 18 N -0.316 5.316 19 C 0.358 3.642 20 O -0.411 6.411 21 C -0.119 4.119 22 C -0.095 4.095 23 C -0.148 4.148 24 C -0.105 4.105 25 N -0.085 5.085 26 N -0.049 5.049 27 C -0.048 4.048 28 C -0.172 4.172 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.197 0.803 44 H 0.093 0.907 45 H 0.156 0.844 46 H 0.079 0.921 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.127 -26.945 -6.989 28.735 hybrid contribution -1.127 -0.362 -1.553 1.953 sum 6.000 -27.308 -8.542 29.235 Atomic orbital electron populations 1.69601 1.05928 1.28230 1.50644 1.25263 0.95641 0.99721 0.97371 0.85913 0.78744 0.80450 0.79075 1.19923 1.21013 1.19882 1.19658 0.93354 0.82260 1.47609 0.87967 1.41860 1.09187 1.04604 1.64451 1.19828 0.88401 0.84739 0.84405 1.90519 1.13752 1.87078 1.55337 1.21670 0.94409 0.91058 1.01113 1.60123 1.18816 0.99933 1.51327 1.21988 0.95272 0.88991 1.00278 1.21187 0.97414 0.93265 0.98752 1.21920 0.97670 0.93985 1.02940 1.21739 0.92397 1.00407 0.86644 1.48029 1.46285 1.12259 1.24980 1.17611 0.81933 0.83593 0.81041 1.90789 1.46725 1.31583 1.72052 1.22910 0.97606 0.94150 0.97193 1.22432 0.97100 0.98351 0.91665 1.22515 0.94370 0.98991 0.98923 1.24553 0.97879 0.90810 0.97285 1.73234 1.12157 1.23731 0.99413 1.73212 0.99656 1.16650 1.15351 1.23074 0.94543 0.80699 1.06449 1.22117 0.98108 0.99310 0.97616 0.91852 0.77474 0.94029 0.89655 0.83156 0.95724 0.91036 0.89622 0.91533 0.90235 0.88903 0.90761 0.81952 0.82279 0.80341 0.90668 0.84368 0.92096 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.51 5.29 -10.97 -0.06 -14.56 16 10 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 N -0.67 -10.89 6.12 -115.06 -0.70 -11.59 16 14 C 0.06 0.79 5.14 -3.83 -0.02 0.77 16 15 C -0.09 -0.92 2.36 -90.58 -0.21 -1.13 16 16 C -0.13 -1.12 5.36 -26.61 -0.14 -1.26 16 17 C 0.11 1.01 6.44 -3.71 -0.02 0.98 16 18 N -0.58 -6.04 2.97 -173.49 -0.51 -6.56 16 19 C 0.57 6.41 7.66 -12.19 -0.09 6.31 16 20 O -0.54 -7.00 15.86 5.35 0.08 -6.92 16 21 C 0.03 0.26 6.66 -82.83 -0.55 -0.30 16 22 C -0.07 -0.44 9.73 -38.82 -0.38 -0.82 16 23 C -0.12 -0.50 10.20 -39.24 -0.40 -0.90 16 24 C 0.06 0.31 11.31 -17.28 -0.20 0.12 16 25 N -0.24 -2.28 11.51 30.59 0.35 -1.92 16 26 N -0.20 -2.08 7.33 33.32 0.24 -1.83 16 27 C 0.07 0.76 5.94 -3.49 -0.02 0.74 16 28 C -0.13 -1.41 5.17 -26.39 -0.14 -1.55 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.35 5.84 6.65 -39.29 -0.26 5.58 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.89 7.00 -51.93 -0.36 0.52 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.16 0.88 7.75 -52.49 -0.41 0.48 16 42 H 0.16 0.08 8.06 -52.49 -0.42 -0.35 16 43 H 0.18 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.14 1.49 3.99 -134.03 -0.53 0.95 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.99 6.62 -51.93 -0.34 0.65 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -34.61 386.83 -8.33 -42.94 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.82 Total: 12.14 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.53 Total: 6.23 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.04 Total: -60.51 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.17 Total: -22.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.61 -8.33 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206661949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds