Wall clock time and date at job start Wed Apr 1 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48498 * 109.47223 * 240.00494 * 3 2 1 5 5 H 1.48501 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47263 * 120.00348 * 3 2 1 7 7 C 1.38949 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99994 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99894 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47024 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99990 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47431 * 179.97438 * 14 13 12 16 16 C 1.53035 * 109.46381 * 174.99843 * 15 14 13 17 17 C 1.53197 * 109.31369 * 181.37307 * 16 15 14 18 18 N 1.46927 * 108.77448 * 305.36554 * 17 16 15 19 19 C 1.34774 * 120.63145 * 233.58547 * 18 17 16 20 20 O 1.21515 * 119.99717 * 7.58783 * 19 18 17 21 21 C 1.48155 * 120.00186 * 187.59047 * 19 18 17 22 22 C 1.39716 * 120.18282 * 189.20269 * 21 19 18 23 23 C 1.38817 * 117.89757 * 179.97438 * 22 21 19 24 24 C 1.38569 * 118.07051 * 359.97438 * 23 22 21 25 25 N 1.32180 * 120.06625 * 0.02562 * 24 23 22 26 26 N 1.28345 * 122.29794 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73556 * 53.85815 * 18 17 16 28 28 C 1.53035 * 109.44908 * 295.06358 * 15 14 13 29 29 H 0.96999 * 120.00977 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99887 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47108 * 60.00742 * 12 10 9 32 32 H 1.09000 * 109.47400 * 300.00305 * 12 10 9 33 33 H 1.00894 * 110.99756 * 303.95520 * 13 12 10 34 34 H 1.08999 * 109.47683 * 59.99801 * 14 13 12 35 35 H 1.09000 * 109.47102 * 299.99617 * 14 13 12 36 36 H 1.09009 * 109.45603 * 55.02550 * 15 14 13 37 37 H 1.09004 * 109.49707 * 61.42344 * 16 15 14 38 38 H 1.08997 * 109.52397 * 301.34195 * 16 15 14 39 39 H 1.09000 * 109.58337 * 185.58120 * 17 16 15 40 40 H 1.09003 * 109.70276 * 65.22194 * 17 16 15 41 41 H 1.08000 * 121.05153 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.96450 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.97007 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58467 * 65.92979 * 27 18 17 45 45 H 1.09006 * 109.58183 * 186.35042 * 27 18 17 46 46 H 1.09000 * 109.49921 * 298.57207 * 28 15 14 47 47 H 1.09002 * 109.50109 * 58.66451 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.4985 -7.2707 -0.0039 15 6 2.5234 -8.4067 -0.0050 16 6 1.7977 -9.7483 0.1196 17 6 2.8288 -10.8809 0.1526 18 7 3.6919 -10.7693 -1.0312 19 6 3.8617 -11.8194 -1.8587 20 8 3.1950 -12.8244 -1.7097 21 6 4.8613 -11.7487 -2.9499 22 6 4.9096 -12.7490 -3.9242 23 6 5.8646 -12.6351 -4.9252 24 6 6.7102 -11.5376 -4.8978 25 7 6.5951 -10.6367 -3.9375 26 7 5.7154 -10.7337 -3.0081 27 6 4.3712 -9.4929 -1.2923 28 6 3.3185 -8.3743 -1.3122 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6171 -4.9201 -0.8920 32 1 0.6176 -4.9213 0.8880 33 1 2.8335 -5.9119 -0.7840 34 1 0.8738 -7.3446 -0.8940 35 1 0.8733 -7.3459 0.8859 36 1 3.2041 -8.2824 0.8373 37 1 1.1352 -9.8843 -0.7353 38 1 1.2127 -9.7620 1.0391 39 1 2.3157 -11.8425 0.1414 40 1 3.4344 -10.8003 1.0553 41 1 4.2257 -13.5844 -3.8992 42 1 5.9461 -13.3801 -5.7028 43 1 7.4641 -11.4183 -5.6619 44 1 5.0997 -9.2990 -0.5050 45 1 4.8763 -9.5386 -2.2572 46 1 2.6417 -8.5232 -2.1535 47 1 3.8163 -7.4097 -1.4115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206661949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:26 Heat of formation + Delta-G solvation = -20.212240 kcal Electronic energy + Delta-G solvation = -29454.620265 eV Core-core repulsion = 25251.356673 eV Total energy + Delta-G solvation = -4203.263592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43315 -40.90413 -40.16389 -39.00674 -36.79993 -35.88385 -34.53877 -34.17237 -33.45016 -33.17100 -31.91651 -29.43045 -27.60597 -26.46173 -25.78802 -25.29471 -24.34055 -23.37391 -21.83719 -21.11946 -20.60860 -19.90454 -19.09653 -18.19573 -17.89174 -17.70778 -17.17223 -17.05725 -16.82195 -16.44151 -16.02258 -15.71444 -15.63594 -15.47036 -15.26840 -15.11589 -14.95017 -14.71846 -14.37145 -14.17762 -14.08484 -13.81772 -13.46771 -13.30690 -13.14590 -12.90883 -12.69563 -12.44901 -12.42753 -12.20022 -12.12301 -11.83823 -11.60838 -11.49938 -11.45405 -11.34085 -11.26303 -11.01016 -10.40937 -10.33403 -10.01687 -9.77104 -9.30995 -8.46277 -5.95214 -0.64604 -0.30484 1.40260 1.41942 1.48242 1.53098 1.73866 2.05281 2.29566 2.50784 2.69702 2.93411 3.20748 3.29904 3.45807 3.53306 3.70708 3.79600 3.83100 3.89478 3.92746 4.10630 4.14281 4.32029 4.34881 4.44006 4.45898 4.55613 4.55953 4.64645 4.71913 4.75003 4.80445 4.87758 4.95640 5.00614 5.02390 5.06234 5.14748 5.27414 5.40770 5.45437 5.55510 5.90318 6.12104 6.17281 6.42076 6.60324 6.79843 7.12537 7.43755 7.56176 8.11550 8.70845 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.001819 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.563408 B =15387.090870 C =16673.506665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.067 3.933 15 C -0.080 4.080 16 C -0.116 4.116 17 C 0.107 3.893 18 N -0.586 5.586 19 C 0.569 3.431 20 O -0.561 6.561 21 C 0.005 3.995 22 C -0.075 4.075 23 C -0.095 4.095 24 C 0.061 3.939 25 N -0.281 5.281 26 N -0.227 5.227 27 C 0.080 3.920 28 C -0.128 4.128 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.343 0.657 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.173 0.827 42 H 0.206 0.794 43 H 0.217 0.783 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -29.108 -9.519 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.155 4.155 17 C -0.014 4.014 18 N -0.316 5.316 19 C 0.355 3.645 20 O -0.440 6.440 21 C -0.141 4.141 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.102 4.102 25 N -0.122 5.122 26 N -0.073 5.073 27 C -0.042 4.042 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.190 0.810 42 H 0.223 0.777 43 H 0.233 0.767 44 H 0.091 0.909 45 H 0.154 0.846 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.961 -28.046 -8.061 30.000 hybrid contribution -1.024 -0.112 -1.292 1.653 sum 5.937 -28.157 -9.354 30.259 Atomic orbital electron populations 1.69662 1.06822 1.29375 1.50250 1.26060 0.96581 1.02461 0.96265 0.84977 0.77749 0.76570 0.78968 1.19649 1.19455 1.19732 1.19639 0.92729 0.84047 1.50033 0.90306 1.41931 1.09328 1.04719 1.65061 1.20896 0.88285 0.86193 0.82211 1.90487 1.15839 1.87965 1.56613 1.21538 0.94089 0.88231 1.02973 1.60144 1.19052 1.01003 1.51375 1.22065 0.95572 0.87341 1.01153 1.21114 0.96983 0.93630 0.98195 1.21842 0.97358 0.92555 1.03724 1.21826 0.92537 1.00373 0.86673 1.48116 1.46208 1.12110 1.25158 1.17915 0.81966 0.83246 0.81337 1.90757 1.47922 1.32374 1.72949 1.22845 0.97841 0.95502 0.97880 1.22681 0.98102 0.97918 0.91717 1.23011 0.92022 0.98914 0.98447 1.25211 0.98299 0.90066 0.96614 1.73137 1.12746 1.25739 1.00627 1.73076 1.00399 1.17386 1.16430 1.22997 0.94282 0.80539 1.06421 1.22043 0.98095 0.98753 0.97751 0.91285 0.76974 0.91869 0.87747 0.83778 0.94842 0.89927 0.90379 0.91827 0.88436 0.89186 0.89812 0.80999 0.77726 0.76681 0.90948 0.84556 0.92284 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.90 5.29 -306.99 -1.62 -31.52 16 10 C 0.44 21.19 7.82 87.66 0.69 21.88 16 11 O -0.62 -35.13 15.78 -3.05 -0.05 -35.18 16 12 C 0.06 2.24 6.17 85.56 0.53 2.77 16 13 N -0.68 -21.80 6.12 -517.94 -3.17 -24.97 16 14 C 0.07 1.55 5.14 86.30 0.44 2.00 16 15 C -0.08 -1.63 2.36 -10.77 -0.03 -1.65 16 16 C -0.12 -1.92 5.36 30.67 0.16 -1.75 16 17 C 0.11 1.92 6.44 86.36 0.56 2.48 16 18 N -0.59 -12.30 2.97 -821.10 -2.44 -14.73 16 19 C 0.57 13.00 7.66 86.88 0.67 13.66 16 20 O -0.56 -14.92 15.86 -3.76 -0.06 -14.98 16 21 C 0.01 0.10 6.66 41.99 0.28 0.38 16 22 C -0.08 -0.92 9.73 22.77 0.22 -0.69 16 23 C -0.10 -0.51 10.20 22.49 0.23 -0.28 16 24 C 0.06 0.52 11.31 84.72 0.96 1.48 16 25 N -0.28 -5.13 11.51 -57.15 -0.66 -5.79 16 26 N -0.23 -4.76 7.33 -48.49 -0.36 -5.12 16 27 C 0.08 1.69 5.94 86.51 0.51 2.21 16 28 C -0.13 -2.76 5.17 30.81 0.16 -2.60 16 29 H 0.28 14.17 8.31 -92.71 -0.77 13.39 16 30 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.34 11.58 6.65 -89.70 -0.60 10.99 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.69 7.00 -2.39 -0.02 1.68 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.17 1.66 7.75 -2.91 -0.02 1.64 16 42 H 0.21 -0.83 8.06 -2.91 -0.02 -0.85 16 43 H 0.22 0.04 8.06 -2.91 -0.02 0.02 16 44 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.14 3.09 3.99 -108.58 -0.43 2.66 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.74 6.62 -2.39 -0.02 1.73 16 Total: -1.00 -77.13 386.83 -0.11 -77.24 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.73 Total: 38.39 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.66 Total: 21.11 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -7.96 Total: -131.94 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.11 Total: -50.16 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.13 -0.11 -77.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206661949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.026 kcal (2) G-P(sol) polarization free energy of solvation -77.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds