Wall clock time and date at job start Wed Apr 1 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47169 * 270.00030 * 3 2 1 5 5 H 1.48498 * 109.47441 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47036 * 150.00038 * 3 2 1 7 7 C 1.38948 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99451 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99816 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99884 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.46630 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99651 * 179.97438 * 13 12 10 15 15 H 1.09007 * 109.49442 * 34.93493 * 14 13 12 16 16 C 1.53043 * 109.49563 * 154.99570 * 14 13 12 17 17 C 1.53045 * 109.53613 * 181.34966 * 16 14 13 18 18 C 1.53193 * 109.31211 * 298.63732 * 17 16 14 19 19 N 1.46927 * 108.77386 * 54.63774 * 18 17 16 20 20 C 1.34777 * 120.63303 * 126.36982 * 19 18 17 21 21 O 1.21283 * 120.00463 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99675 * 359.72079 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.38598 * 120.79454 * 269.72132 * 23 22 20 25 25 N 1.32336 * 119.09961 * 179.71754 * 24 23 22 26 26 C 1.31801 * 120.82107 * 0.56649 * 25 24 23 27 27 N 1.31793 * 121.74879 * 359.70702 * 26 25 24 28 28 C 1.32334 * 120.82109 * 359.97438 * 27 26 25 29 29 C 1.46925 * 118.74028 * 306.63705 * 19 18 17 30 30 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99666 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47535 * 60.00433 * 12 10 9 33 33 H 1.08995 * 109.46814 * 299.99800 * 12 10 9 34 34 H 1.00895 * 110.99946 * 303.94767 * 13 12 10 35 35 H 1.09001 * 109.45653 * 61.33237 * 16 14 13 36 36 H 1.08988 * 109.46264 * 301.37299 * 16 14 13 37 37 H 1.08996 * 109.49670 * 178.68970 * 17 16 14 38 38 H 1.09000 * 109.49698 * 58.59077 * 17 16 14 39 39 H 1.08997 * 109.59146 * 294.85081 * 18 17 16 40 40 H 1.08999 * 109.70364 * 174.49312 * 18 17 16 41 41 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 42 42 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 43 43 H 1.08002 * 120.45290 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.12365 * 179.68340 * 26 25 24 45 45 H 1.08003 * 120.44931 * 179.97438 * 28 27 26 46 46 H 1.09000 * 109.59194 * 173.14578 * 29 19 18 47 47 H 1.09004 * 109.59115 * 293.57214 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4982 -7.2708 0.0039 15 1 0.5840 -7.1894 -0.5843 16 6 2.4038 -8.3435 -0.6054 17 6 1.6627 -9.6823 -0.6355 18 6 1.3137 -10.1004 0.7963 19 7 0.5655 -9.0108 1.4380 20 6 -0.6319 -9.2444 2.0110 21 8 -1.2395 -8.3366 2.5379 22 6 -1.2183 -10.6324 1.9919 23 6 -2.5553 -10.6226 2.6873 24 6 -2.6487 -10.8646 4.0488 25 7 -3.8392 -10.8422 4.6262 26 6 -4.9273 -10.6050 3.9213 27 7 -4.8772 -10.3762 2.6244 28 6 -3.7214 -10.3765 1.9800 29 6 1.1446 -7.6605 1.4380 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0016 32 1 0.6168 -4.9209 -0.8875 33 1 0.6175 -4.9204 0.8924 34 1 2.8332 -5.9128 -0.7787 35 1 3.3066 -8.4417 -0.0026 36 1 2.6751 -8.0558 -1.6211 37 1 2.2997 -10.4405 -1.0908 38 1 0.7471 -9.5782 -1.2176 39 1 2.2299 -10.2927 1.3546 40 1 0.7015 -11.0020 0.7770 41 1 -1.3482 -10.9579 0.9596 42 1 -0.5458 -11.3182 2.5072 43 1 -1.7615 -11.0645 4.6314 44 1 -5.8854 -10.5982 4.4197 45 1 -3.6874 -10.1887 0.9169 46 1 0.4200 -6.9520 1.8395 47 1 2.0468 -7.6497 2.0496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207920497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:33 Heat of formation + Delta-G solvation = -18.798378 kcal Electronic energy + Delta-G solvation = -29641.138125 eV Core-core repulsion = 25437.935843 eV Total energy + Delta-G solvation = -4203.202282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46030 -40.39001 -38.49698 -37.73115 -35.21437 -34.16599 -34.00310 -33.83437 -32.57690 -31.22874 -30.32668 -28.68901 -26.34301 -25.67752 -24.94086 -24.19454 -23.46392 -22.40796 -20.85787 -19.34537 -19.13928 -17.97371 -17.96047 -17.87046 -17.62494 -16.45842 -16.17162 -15.59990 -15.36539 -15.04637 -14.88809 -14.71431 -14.47352 -14.33964 -14.11998 -13.98141 -13.92091 -13.79947 -13.59374 -13.44078 -12.91408 -12.85573 -12.49601 -12.26708 -11.92463 -11.57941 -11.45791 -11.35263 -11.23526 -11.20321 -11.12445 -11.03212 -10.59929 -10.38594 -10.28899 -10.20704 -9.69175 -9.55095 -9.50325 -8.97736 -8.46489 -8.12986 -7.95601 -6.40541 -3.81641 0.51405 0.76940 2.29905 2.63472 3.18482 3.27201 3.33221 3.45646 3.81049 3.89259 3.90548 4.01718 4.10281 4.19429 4.24165 4.26098 4.31824 4.53454 4.54947 4.63287 4.84706 4.86951 5.02002 5.03344 5.11298 5.14880 5.19683 5.26040 5.32385 5.45892 5.47428 5.56068 5.66955 5.74525 5.79362 5.92718 5.98328 6.03398 6.05869 6.16926 6.29677 6.60775 7.07542 7.16676 7.56081 7.59471 7.74418 7.86867 8.06812 8.61718 9.18450 9.55011 10.06025 10.77143 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.616459 B =13146.864199 C =15029.937545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.662 5.662 14 C 0.076 3.924 15 H 0.045 0.955 16 C -0.123 4.123 17 C -0.132 4.132 18 C 0.104 3.896 19 N -0.610 5.610 20 C 0.514 3.486 21 O -0.530 6.530 22 C -0.092 4.092 23 C -0.172 4.172 24 C 0.162 3.838 25 N -0.519 5.519 26 C 0.291 3.709 27 N -0.518 5.518 28 C 0.163 3.837 29 C 0.121 3.879 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.165 0.835 44 H 0.196 0.804 45 H 0.165 0.835 46 H 0.092 0.908 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -28.625 0.860 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.036 4.036 15 H 0.063 0.937 16 C -0.161 4.161 17 C -0.171 4.171 18 C -0.019 4.019 19 N -0.344 5.344 20 C 0.301 3.699 21 O -0.406 6.406 22 C -0.133 4.133 23 C -0.177 4.177 24 C -0.004 4.004 25 N -0.232 5.232 26 C 0.004 3.996 27 N -0.231 5.231 28 C -0.003 4.003 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.183 0.817 44 H 0.213 0.787 45 H 0.182 0.818 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.548 -27.920 2.305 28.382 hybrid contribution 0.296 0.923 -1.417 1.716 sum -4.252 -26.998 0.888 27.345 Atomic orbital electron populations 1.69619 1.05953 1.28193 1.50454 1.25280 0.95639 0.99763 0.97307 0.85850 0.79252 0.80793 0.78346 1.20429 1.20903 1.19386 1.19699 0.93360 0.82212 1.47655 0.87897 1.41871 1.09247 1.04625 1.64188 1.19763 0.88352 0.84674 0.84580 1.90517 1.13697 1.87064 1.55576 1.21751 0.94288 0.90962 1.01290 1.59937 1.18748 0.99268 1.51569 1.21718 0.96127 0.89956 0.95760 0.93700 1.21720 0.98964 0.93885 1.01536 1.21901 1.01196 0.97823 0.96177 1.21826 0.97040 0.89374 0.93670 1.48114 1.19469 1.10248 1.56577 1.20420 0.80598 0.90406 0.78477 1.90779 1.59656 1.45856 1.44266 1.20558 0.93713 0.96065 1.02985 1.21079 0.96544 1.03398 0.96638 1.23082 0.95949 0.90050 0.91281 1.68439 0.99440 1.14597 1.40719 1.25002 0.97482 0.90239 0.86921 1.68440 1.29218 1.14180 1.11277 1.23085 0.87029 0.89486 1.00712 1.21555 0.99439 0.82254 0.96947 0.91839 0.77431 0.93813 0.89577 0.82547 0.90468 0.91338 0.90189 0.91397 0.90737 0.89706 0.87260 0.87253 0.81748 0.78727 0.81759 0.88926 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 11 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 12 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 13 N -0.66 -10.29 5.94 -108.09 -0.64 -10.93 16 14 C 0.08 0.88 2.63 -67.81 -0.18 0.70 16 15 H 0.05 0.55 7.80 -51.93 -0.41 0.15 16 16 C -0.12 -1.04 5.17 -26.69 -0.14 -1.18 16 17 C -0.13 -0.73 6.08 -26.61 -0.16 -0.90 16 18 C 0.10 0.53 6.35 -3.71 -0.02 0.51 16 19 N -0.61 -5.47 2.98 -173.03 -0.52 -5.99 16 20 C 0.51 5.14 7.69 -10.98 -0.08 5.06 16 21 O -0.53 -8.00 15.45 5.55 0.09 -7.92 16 22 C -0.09 -0.51 4.23 -29.03 -0.12 -0.63 16 23 C -0.17 -1.40 4.41 -104.36 -0.46 -1.86 16 24 C 0.16 1.44 11.01 -17.20 -0.19 1.25 16 25 N -0.52 -5.38 10.44 -14.58 -0.15 -5.54 16 26 C 0.29 2.82 12.29 -92.15 -1.13 1.69 16 27 N -0.52 -5.45 10.44 -14.58 -0.15 -5.60 16 28 C 0.16 1.47 11.01 -17.21 -0.19 1.28 16 29 C 0.12 1.45 5.87 -3.93 -0.02 1.42 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 32 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.09 1.51 7.55 -51.93 -0.39 1.12 16 34 H 0.35 5.57 8.03 -39.29 -0.32 5.26 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.57 8.10 -51.94 -0.42 0.15 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.20 5.93 -51.93 -0.31 -0.11 16 41 H 0.11 0.33 7.65 -51.92 -0.40 -0.07 16 42 H 0.11 0.31 7.90 -51.93 -0.41 -0.10 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.09 1.38 6.47 -51.93 -0.34 1.04 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -36.72 391.67 -9.42 -46.14 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.62 Total: 11.78 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -3.06 Total: 10.52 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.80 Total: -66.94 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.17 Total: -23.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.72 -9.42 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207920497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.338 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds