Wall clock time and date at job start Wed Apr 1 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47169 * 270.00030 * 3 2 1 5 5 H 1.48498 * 109.47441 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47036 * 150.00038 * 3 2 1 7 7 C 1.38948 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99451 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99816 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99884 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.46630 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99651 * 179.97438 * 13 12 10 15 15 H 1.09007 * 109.49442 * 34.93493 * 14 13 12 16 16 C 1.53043 * 109.49563 * 154.99570 * 14 13 12 17 17 C 1.53045 * 109.53613 * 181.34966 * 16 14 13 18 18 C 1.53193 * 109.31211 * 298.63732 * 17 16 14 19 19 N 1.46927 * 108.77386 * 54.63774 * 18 17 16 20 20 C 1.34777 * 120.63303 * 126.36982 * 19 18 17 21 21 O 1.21283 * 120.00463 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99675 * 359.72079 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.38598 * 120.79454 * 269.72132 * 23 22 20 25 25 N 1.32336 * 119.09961 * 179.71754 * 24 23 22 26 26 C 1.31801 * 120.82107 * 0.56649 * 25 24 23 27 27 N 1.31793 * 121.74879 * 359.70702 * 26 25 24 28 28 C 1.32334 * 120.82109 * 359.97438 * 27 26 25 29 29 C 1.46925 * 118.74028 * 306.63705 * 19 18 17 30 30 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99666 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47535 * 60.00433 * 12 10 9 33 33 H 1.08995 * 109.46814 * 299.99800 * 12 10 9 34 34 H 1.00895 * 110.99946 * 303.94767 * 13 12 10 35 35 H 1.09001 * 109.45653 * 61.33237 * 16 14 13 36 36 H 1.08988 * 109.46264 * 301.37299 * 16 14 13 37 37 H 1.08996 * 109.49670 * 178.68970 * 17 16 14 38 38 H 1.09000 * 109.49698 * 58.59077 * 17 16 14 39 39 H 1.08997 * 109.59146 * 294.85081 * 18 17 16 40 40 H 1.08999 * 109.70364 * 174.49312 * 18 17 16 41 41 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 42 42 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 43 43 H 1.08002 * 120.45290 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.12365 * 179.68340 * 26 25 24 45 45 H 1.08003 * 120.44931 * 179.97438 * 28 27 26 46 46 H 1.09000 * 109.59194 * 173.14578 * 29 19 18 47 47 H 1.09004 * 109.59115 * 293.57214 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4982 -7.2708 0.0039 15 1 0.5840 -7.1894 -0.5843 16 6 2.4038 -8.3435 -0.6054 17 6 1.6627 -9.6823 -0.6355 18 6 1.3137 -10.1004 0.7963 19 7 0.5655 -9.0108 1.4380 20 6 -0.6319 -9.2444 2.0110 21 8 -1.2395 -8.3366 2.5379 22 6 -1.2183 -10.6324 1.9919 23 6 -2.5553 -10.6226 2.6873 24 6 -2.6487 -10.8646 4.0488 25 7 -3.8392 -10.8422 4.6262 26 6 -4.9273 -10.6050 3.9213 27 7 -4.8772 -10.3762 2.6244 28 6 -3.7214 -10.3765 1.9800 29 6 1.1446 -7.6605 1.4380 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0016 32 1 0.6168 -4.9209 -0.8875 33 1 0.6175 -4.9204 0.8924 34 1 2.8332 -5.9128 -0.7787 35 1 3.3066 -8.4417 -0.0026 36 1 2.6751 -8.0558 -1.6211 37 1 2.2997 -10.4405 -1.0908 38 1 0.7471 -9.5782 -1.2176 39 1 2.2299 -10.2927 1.3546 40 1 0.7015 -11.0020 0.7770 41 1 -1.3482 -10.9579 0.9596 42 1 -0.5458 -11.3182 2.5072 43 1 -1.7615 -11.0645 4.6314 44 1 -5.8854 -10.5982 4.4197 45 1 -3.6874 -10.1887 0.9169 46 1 0.4200 -6.9520 1.8395 47 1 2.0468 -7.6497 2.0496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207920497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:32 Heat of formation + Delta-G solvation = -46.755222 kcal Electronic energy + Delta-G solvation = -29642.350425 eV Core-core repulsion = 25437.935843 eV Total energy + Delta-G solvation = -4204.414582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11074 -41.15455 -40.20081 -38.81163 -36.41387 -35.79704 -34.77489 -34.67638 -33.42515 -33.20415 -31.29112 -29.43445 -27.88533 -26.43809 -25.82466 -25.58686 -24.15653 -23.20671 -21.72005 -21.08146 -19.99754 -19.87693 -18.62136 -18.57809 -18.36575 -17.79646 -17.26670 -16.78531 -16.47008 -16.31519 -16.10674 -15.71862 -15.59133 -15.34401 -15.33339 -14.95562 -14.79309 -14.58544 -14.51923 -14.16464 -14.09788 -13.85752 -13.59045 -13.50744 -13.20178 -13.03106 -12.92201 -12.47466 -12.43700 -12.14482 -11.99954 -11.92209 -11.83606 -11.75944 -11.53939 -11.44536 -11.06847 -10.40787 -10.33047 -10.22972 -10.06172 -9.76206 -9.39357 -8.49786 -5.99429 -0.12527 0.11748 1.35885 1.39580 1.53107 1.59058 1.93231 1.99394 2.26728 2.78757 2.88737 3.16879 3.23793 3.29406 3.44114 3.54118 3.63842 3.66749 3.84908 3.88181 3.94306 4.07961 4.16816 4.24395 4.29899 4.37522 4.43951 4.48155 4.55320 4.57688 4.65953 4.71884 4.82129 4.88496 4.91635 5.00040 5.12369 5.16809 5.34514 5.37979 5.42616 5.47645 5.86053 5.96184 6.04760 6.35425 6.42860 6.54872 7.08022 7.08123 7.15467 7.50796 8.05042 8.67778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.616459 B =13146.864199 C =15029.937545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.082 0.918 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.619 6.619 12 C 0.067 3.933 13 N -0.673 5.673 14 C 0.080 3.920 15 H 0.042 0.958 16 C -0.120 4.120 17 C -0.126 4.126 18 C 0.097 3.903 19 N -0.605 5.605 20 C 0.509 3.491 21 O -0.592 6.592 22 C -0.080 4.080 23 C -0.171 4.171 24 C 0.148 3.852 25 N -0.542 5.542 26 C 0.277 3.723 27 N -0.542 5.542 28 C 0.147 3.853 29 C 0.125 3.875 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.352 0.648 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.187 0.813 44 H 0.215 0.785 45 H 0.185 0.815 46 H 0.055 0.945 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -31.040 -0.164 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.505 6.505 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.030 4.030 15 H 0.060 0.940 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.024 4.024 19 N -0.338 5.338 20 C 0.299 3.701 21 O -0.472 6.472 22 C -0.120 4.120 23 C -0.175 4.175 24 C -0.017 4.017 25 N -0.255 5.255 26 C -0.010 4.010 27 N -0.256 5.256 28 C -0.018 4.018 29 C 0.001 3.999 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.204 0.796 44 H 0.231 0.769 45 H 0.202 0.798 46 H 0.074 0.926 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.954 -30.393 1.256 30.675 hybrid contribution 0.149 1.632 -1.090 1.969 sum -3.804 -28.761 0.166 29.012 Atomic orbital electron populations 1.69691 1.06998 1.29387 1.50251 1.26122 0.96564 1.02657 0.96169 0.84882 0.77841 0.76561 0.78779 1.19335 1.19626 1.19629 1.19698 0.92781 0.83896 1.49987 0.90032 1.41966 1.09308 1.04877 1.64926 1.20748 0.88250 0.85975 0.82380 1.90481 1.15523 1.87897 1.56647 1.21532 0.94065 0.88709 1.02281 1.59915 1.18822 1.00203 1.51740 1.21777 0.96468 0.88980 0.95770 0.94038 1.21732 0.98489 0.94467 1.01118 1.21909 1.01375 0.96428 0.96704 1.22216 0.97948 0.89181 0.93042 1.48203 1.19472 1.09786 1.56334 1.21238 0.80202 0.91561 0.77142 1.90763 1.61325 1.48155 1.46999 1.20668 0.92489 0.93461 1.05414 1.21313 0.97517 1.02286 0.96407 1.23580 0.96222 0.89748 0.92146 1.68461 1.00222 1.15481 1.41381 1.25429 0.98307 0.90218 0.87028 1.68455 1.30312 1.15080 1.11744 1.23556 0.87163 0.89231 1.01838 1.21253 0.98077 0.83805 0.96738 0.91265 0.77172 0.91856 0.89288 0.82720 0.90667 0.91148 0.87270 0.91227 0.89618 0.85637 0.83600 0.83464 0.79623 0.76880 0.79842 0.92630 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 13.05 21.66 0.28 -51.13 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.57 -30.64 5.29 -306.99 -1.62 -32.26 16 10 C 0.44 21.60 7.82 87.66 0.69 22.29 16 11 O -0.62 -34.70 15.78 -3.07 -0.05 -34.75 16 12 C 0.07 2.44 5.97 85.56 0.51 2.95 16 13 N -0.67 -21.07 5.94 -495.89 -2.94 -24.02 16 14 C 0.08 1.82 2.63 44.85 0.12 1.93 16 15 H 0.04 0.98 7.80 -2.38 -0.02 0.96 16 16 C -0.12 -1.76 5.17 30.62 0.16 -1.60 16 17 C -0.13 -0.86 6.08 30.67 0.19 -0.68 16 18 C 0.10 0.56 6.35 86.36 0.55 1.10 16 19 N -0.61 -9.53 2.98 -819.73 -2.44 -11.97 16 20 C 0.51 9.24 7.69 87.66 0.67 9.91 16 21 O -0.59 -18.10 15.45 -3.04 -0.05 -18.14 16 22 C -0.08 -0.57 4.23 29.10 0.12 -0.45 16 23 C -0.17 -2.45 4.41 -19.69 -0.09 -2.53 16 24 C 0.15 2.45 11.01 84.70 0.93 3.38 16 25 N -0.54 -11.12 10.44 -200.04 -2.09 -13.20 16 26 C 0.28 5.40 12.29 180.88 2.22 7.62 16 27 N -0.54 -11.30 10.44 -200.05 -2.09 -13.39 16 28 C 0.15 2.49 11.01 84.70 0.93 3.42 16 29 C 0.13 3.00 5.87 86.22 0.51 3.50 16 30 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 31 H 0.39 20.32 7.90 -92.71 -0.73 19.58 16 32 H 0.06 2.07 8.06 -2.39 -0.02 2.06 16 33 H 0.09 3.23 7.55 -2.39 -0.02 3.21 16 34 H 0.35 11.14 8.03 -89.70 -0.72 10.42 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 37 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.13 -0.24 5.93 -2.39 -0.01 -0.25 16 41 H 0.15 0.04 7.65 -2.38 -0.02 0.02 16 42 H 0.15 0.00 7.90 -2.39 -0.02 -0.02 16 43 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.06 1.74 6.47 -2.39 -0.02 1.73 16 47 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -84.85 391.67 -0.61 -85.46 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.43 Total: 35.76 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 8.79 Total: 31.82 kcal Atomic # 7 Polarization: -135.07 SS G_CDS: -10.90 Total: -145.97 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.10 Total: -52.89 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -84.85 -0.61 -85.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207920497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -84.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds