Wall clock time and date at job start Wed Apr 1 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86796 * 120.00640 * 2 1 4 4 H 1.48499 * 109.47127 * 270.00173 * 3 2 1 5 5 H 1.48507 * 109.46975 * 29.99731 * 3 2 1 6 6 H 1.48501 * 109.47595 * 149.99629 * 3 2 1 7 7 C 1.38955 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99886 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99667 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99903 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99592 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46751 * 180.02562 * 12 10 9 14 14 C 1.49312 * 111.00300 * 55.45435 * 13 12 10 15 15 C 1.55036 * 102.76163 * 161.49019 * 14 13 12 16 16 C 1.55878 * 103.25952 * 323.92616 * 15 14 13 17 17 H 1.09003 * 109.62269 * 258.92217 * 16 15 14 18 18 C 1.51167 * 107.30465 * 139.79571 * 16 15 14 19 19 C 1.51115 * 114.90156 * 207.08047 * 18 16 15 20 20 N 1.45507 * 111.37509 * 46.13220 * 19 18 16 21 21 C 1.34781 * 119.37718 * 132.30719 * 20 19 18 22 22 O 1.21604 * 119.99418 * 176.42497 * 21 20 19 23 23 C 1.47423 * 120.00048 * 356.42009 * 21 20 19 24 24 C 1.41292 * 126.41278 * 42.97156 * 23 21 20 25 25 N 1.30449 * 108.02493 * 179.85168 * 24 23 21 26 26 N 1.39934 * 108.89364 * 0.40739 * 25 24 23 27 27 H 0.97003 * 125.75267 * 179.74125 * 26 25 24 28 28 C 1.34261 * 108.49238 * 359.73358 * 26 25 24 29 29 C 1.45233 * 121.24444 * 312.33418 * 20 19 18 30 30 C 1.47178 * 110.99732 * 170.00074 * 13 12 10 31 31 H 1.08999 * 103.91639 * 318.10446 * 30 13 12 32 32 H 0.97007 * 119.99832 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00097 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.47179 * 299.99917 * 12 10 9 35 35 H 1.08996 * 109.47042 * 60.00370 * 12 10 9 36 36 H 1.09002 * 110.75522 * 279.81038 * 14 13 12 37 37 H 1.09003 * 110.75637 * 43.17434 * 14 13 12 38 38 H 1.08997 * 110.66017 * 205.48162 * 15 14 13 39 39 H 1.08998 * 110.79807 * 82.43604 * 15 14 13 40 40 H 1.09002 * 108.38528 * 85.68475 * 18 16 15 41 41 H 1.08996 * 108.27001 * 328.39238 * 18 16 15 42 42 H 1.08999 * 109.10129 * 285.63895 * 19 18 16 43 43 H 1.09006 * 109.09531 * 166.61618 * 19 18 16 44 44 H 1.08002 * 125.98630 * 359.97438 * 24 23 21 45 45 H 1.08002 * 126.29235 * 179.97438 * 28 26 25 46 46 H 1.09005 * 108.50919 * 275.04944 * 29 20 19 47 47 H 1.08996 * 108.38964 * 157.46028 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2433 -4.8630 0.0011 13 7 2.1979 -5.9796 0.0016 14 6 3.1465 -5.8722 1.1497 15 6 3.7118 -7.3114 1.2626 16 6 2.4860 -8.2060 0.9063 17 1 2.0457 -8.6046 1.8203 18 6 2.9928 -9.3413 0.0463 19 6 1.9722 -9.9247 -0.9033 20 7 1.2444 -8.8797 -1.6071 21 6 1.0903 -8.9664 -2.9433 22 8 0.4291 -8.1343 -3.5342 23 6 1.7234 -10.0698 -3.6883 24 6 1.7647 -11.4280 -3.3012 25 7 2.4090 -12.0907 -4.2218 26 7 2.8129 -11.1998 -5.2225 27 1 3.3126 -11.4326 -6.0206 28 6 2.3918 -9.9686 -4.8918 29 6 0.6814 -7.7448 -0.8971 30 6 1.5121 -7.2597 0.2408 31 1 0.7941 -7.0293 1.0279 32 1 -0.4850 0.8401 -0.0004 33 1 0.3532 -2.3906 0.0005 34 1 0.6170 -4.9205 0.8914 35 1 0.6164 -4.9209 -0.8886 36 1 3.9422 -5.1610 0.9281 37 1 2.6192 -5.5918 2.0616 38 1 4.0522 -7.5123 2.2784 39 1 4.5213 -7.4663 0.5493 40 1 3.3475 -10.1370 0.7014 41 1 3.8374 -8.9766 -0.5381 42 1 1.2658 -10.5328 -0.3381 43 1 2.4822 -10.5562 -1.6309 44 1 1.3361 -11.8449 -2.4018 45 1 2.5479 -9.0649 -5.4623 46 1 -0.2991 -8.0280 -0.5140 47 1 0.5520 -6.9261 -1.6050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222309422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:56 Heat of formation + Delta-G solvation = 36.272567 kcal Electronic energy + Delta-G solvation = -30962.358862 eV Core-core repulsion = 26761.544635 eV Total energy + Delta-G solvation = -4200.814227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78676 -40.50946 -38.95685 -37.82275 -35.90243 -33.96180 -33.36225 -32.34138 -31.24887 -31.08553 -30.02261 -29.72814 -26.62978 -25.20744 -24.38007 -23.14820 -22.70526 -22.05431 -21.19538 -20.04764 -19.21394 -18.79596 -18.12485 -17.79000 -16.65530 -16.19155 -16.15768 -15.60261 -15.40594 -15.02996 -14.92520 -14.72915 -14.53245 -14.27612 -14.02925 -13.86016 -13.74927 -13.54780 -13.09662 -12.92320 -12.71678 -12.35700 -12.17539 -11.92033 -11.60093 -11.47151 -11.45299 -11.14624 -11.11752 -10.85302 -10.73607 -10.48441 -10.45544 -10.34680 -10.19952 -10.11736 -9.90364 -9.46437 -9.08889 -8.64491 -8.35920 -7.99884 -7.88405 -6.39930 -3.80659 1.32634 1.92176 2.36191 2.80341 3.19054 3.19779 3.27598 3.33063 3.89896 3.96246 4.22006 4.27060 4.47900 4.51562 4.56242 4.67426 4.78857 4.94509 5.00965 5.08776 5.20414 5.20595 5.24920 5.28388 5.35040 5.44049 5.53452 5.60712 5.68405 5.75802 5.78882 5.86090 5.96114 5.98352 6.01592 6.12645 6.18361 6.30747 6.34521 6.55773 6.67508 6.72727 7.11763 7.22140 7.29778 7.36716 7.56895 8.07774 8.18220 8.63441 9.19591 9.55878 10.07527 10.77838 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.002462 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.066031 B =11367.898384 C =12256.533333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.445 3.555 11 O -0.580 6.580 12 C 0.033 3.967 13 N -0.482 5.482 14 C 0.034 3.966 15 C -0.121 4.121 16 C -0.079 4.079 17 H 0.076 0.924 18 C -0.123 4.123 19 C 0.102 3.898 20 N -0.590 5.590 21 C 0.592 3.408 22 O -0.537 6.537 23 C -0.284 4.284 24 C 0.080 3.920 25 N -0.296 5.296 26 N -0.464 5.464 27 H 0.445 0.555 28 C 0.126 3.874 29 C 0.133 3.867 30 C 0.062 3.938 31 H 0.031 0.969 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.192 0.808 45 H 0.190 0.810 46 H 0.062 0.938 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 -24.643 -2.614 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.231 3.769 11 O -0.465 6.465 12 C -0.098 4.098 13 N -0.207 5.207 14 C -0.093 4.093 15 C -0.159 4.159 16 C -0.098 4.098 17 H 0.094 0.906 18 C -0.161 4.161 19 C -0.021 4.021 20 N -0.322 5.322 21 C 0.380 3.620 22 O -0.414 6.414 23 C -0.299 4.299 24 C -0.108 4.108 25 N -0.118 5.118 26 N -0.170 5.170 27 H 0.289 0.711 28 C -0.026 4.026 29 C 0.010 3.990 30 C -0.048 4.048 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.209 0.791 45 H 0.207 0.793 46 H 0.081 0.919 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.687 -25.133 -3.760 25.679 hybrid contribution -0.829 1.631 0.753 1.978 sum 2.858 -23.502 -3.007 23.865 Atomic orbital electron populations 1.69616 1.05941 1.28154 1.50514 1.25266 0.95630 0.99722 0.97341 0.85860 0.79185 0.80835 0.78408 1.20384 1.20954 1.19452 1.19690 0.93327 0.82177 1.47588 0.87917 1.41847 1.09223 1.04555 1.64210 1.19629 0.88306 0.84548 0.84444 1.90440 1.13703 1.86784 1.55580 1.22149 0.94624 0.91425 1.01624 1.64750 1.14450 0.99076 1.42445 1.23576 0.97777 0.96977 0.90986 1.23041 0.96900 0.94868 1.01120 1.20995 0.96191 0.94902 0.97745 0.90600 1.21165 0.98955 0.98076 0.97941 1.21272 0.94813 0.90043 0.96001 1.46942 1.55143 1.23605 1.06555 1.17330 0.79742 0.83798 0.81138 1.90809 1.40132 1.42135 1.68278 1.20253 1.14980 0.94911 0.99757 1.24132 0.97023 0.91288 0.98327 1.77147 1.19221 1.16146 0.99237 1.46187 1.44756 1.05207 1.20871 0.71074 1.23003 0.94328 0.90164 0.95149 1.20224 0.94384 0.89531 0.94884 1.20963 0.95789 0.92299 0.95742 0.95111 0.91863 0.77434 0.93341 0.89116 0.86481 0.94490 0.91560 0.90676 0.90853 0.91230 0.91948 0.88886 0.79101 0.79282 0.91943 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C 0.45 10.62 7.50 -10.98 -0.08 10.53 16 11 O -0.58 -15.47 13.28 5.55 0.07 -15.40 16 12 C 0.03 0.62 5.25 -4.98 -0.03 0.59 16 13 N -0.48 -8.24 5.13 -227.90 -1.17 -9.41 16 14 C 0.03 0.56 5.43 -1.40 -0.01 0.55 16 15 C -0.12 -1.49 6.54 -24.12 -0.16 -1.65 16 16 C -0.08 -0.85 3.25 -90.90 -0.30 -1.14 16 17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.12 -1.08 5.40 -28.60 -0.15 -1.23 16 19 C 0.10 0.85 5.41 -5.52 -0.03 0.82 16 20 N -0.59 -6.93 3.07 -180.25 -0.55 -7.48 16 21 C 0.59 7.89 7.53 -12.52 -0.09 7.79 16 22 O -0.54 -9.29 16.49 5.27 0.09 -9.20 16 23 C -0.28 -2.93 5.24 -105.07 -0.55 -3.48 16 24 C 0.08 0.68 9.53 -16.98 -0.16 0.52 16 25 N -0.30 -2.66 12.63 30.86 0.39 -2.27 16 26 N -0.46 -3.20 7.29 30.85 0.22 -2.97 16 27 H 0.44 1.52 8.96 -182.72 -1.64 -0.12 16 28 C 0.13 1.04 12.01 -16.56 -0.20 0.84 16 29 C 0.13 1.74 5.89 -6.68 -0.04 1.70 16 30 C 0.06 0.82 2.12 -70.41 -0.15 0.67 16 31 H 0.03 0.40 7.28 -51.93 -0.38 0.02 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 34 H 0.05 0.82 7.68 -51.93 -0.40 0.42 16 35 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 36 H 0.12 2.34 6.01 -51.93 -0.31 2.03 16 37 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.94 7.18 -51.93 -0.37 0.57 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.69 4.26 -51.93 -0.22 0.47 16 44 H 0.19 1.09 7.13 -52.49 -0.37 0.72 16 45 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 47 H 0.10 1.57 5.97 -51.93 -0.31 1.26 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -35.56 372.48 -9.42 -44.98 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.54 Total: 9.99 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.19 Total: 8.50 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.44 Total: -60.69 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.16 Total: -24.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.56 -9.42 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222309422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.256 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds